LOCUS       NZ_AP026402             1581 bp    DNA     circular CON 17-APR-2024
DEFINITION  Klebsiella quasipneumoniae subsp. quasipneumoniae strain KAM622
            plasmid pKAM622_10, complete sequence.
ACCESSION   NZ_AP026402
VERSION     NZ_AP026402.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00446295
            Assembly: GCF_024347755.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella quasipneumoniae subsp. quasipneumoniae
  ORGANISM  Klebsiella quasipneumoniae subsp. quasipneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Maehana,S., Suzuki,M. and Kitasato,H.
  TITLE     Complete genome sequence of carbapenem-resistant Klebsiella spp. in
            Japan
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1581)
  AUTHORS   Maehana,S., Suzuki,M. and Kitasato,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-JUL-2022) Contact:Shotaro Maehana Kitasato university,
            Allied Health Sciences; 1-15-1, Kitasato, Minami-ku, Sagamihara,
            Kanagawa 252-0373, Japan URL
            :https://www.kitasato-u.ac.jp/ahs/english/index.html
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Canu v. 2.1.1
            Genome Coverage                   :: 200x
            Sequencing Technology             :: Illumina HiSeq; ONT MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024347755.1-RS_2024_04_17
            Annotation Date                   :: 04/17/2024 10:36:28
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,129
            CDSs (total)                      :: 6,017
            Genes (coding)                    :: 5,593
            CDSs (with protein)               :: 5,593
            Genes (RNA)                       :: 112
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 81
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 424
            CDSs (without protein)            :: 424
            Pseudo Genes (ambiguous residues) :: 0 of 424
            Pseudo Genes (frameshifted)       :: 118 of 424
            Pseudo Genes (incomplete)         :: 273 of 424
            Pseudo Genes (internal stop)      :: 123 of 424
            Pseudo Genes (multiple problems)  :: 78 of 424
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            AP026402.1.
            Annotated by DFAST https://dfast.ddbj.nig.ac.jp/
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1581
                     /organism="Klebsiella quasipneumoniae subsp.
                     quasipneumoniae"
                     /mol_type="genomic DNA"
                     /strain="KAM622"
                     /sub_species="quasipneumoniae"
                     /db_xref="taxon:1667327"
                     /plasmid="pKAM622_10"
                     /geo_loc_name="Japan"
                     /collection_date="2019"
     gene            complement(join(1451..1581,1..448))
                     /locus_tag="P4I30_RS30615"
     CDS             complement(join(1451..1581,1..448))
                     /locus_tag="P4I30_RS30615"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_276086065.1"
                     /translation="MIVASEHQAKLRQKEIQEIDRKASKEHEEAKKNSNFTQTYPKGWQ
                     RIRELLRDKQGAAAIGLYSFFAEHIDPTCGAVVCDQQFLANQMGVSTRTIRRWLDYLEE
                     KGALVRIPVAGKVCAYALDPHEVWKGYNTSKDYSAFVTKTLVNKDVFRRGERSRAVTKR
                     LLTDRNDHHPRKGGWFATANYPHDNPPFK"
                     /name="helix-turn-helix domain-containing protein"
ORIGIN
        1 catccttgtt cactaatgtc ttggtaacaa aggctgagta gtcttttgat gtgttatatc
       61 ccttccagac ttcgtgagga tctaaagcgt aagcacaaac ctttccagca actggtattc
      121 ttaccaaagc acctttctcc tccaaataat ctaaccaacg acgaattgtc cgagtagaaa
      181 cacccatctg attagctaaa aactgctggt cgcagaccac ggcaccgcat gtaggatcta
      241 tatgttcagc gaaaaatgag taaagaccta tagcggcagc accctgtttg tccctcaaaa
      301 gctctctaat gcgttgccag ccctttgggt atgtctgagt gaagttactg ttcttcttcg
      361 cctcctcgtg ctctttagat gccttcctgt cgatttcctg tatttctttc tgcctgagct
      421 ttgcttggtg ttctgaagct acgatcatct ttatccctcg gtgtcttttt tataggacat
      481 ttttgtccca tcataggact tgtggtgtcc tatgtccagc cacgtgcgga cacagctggt
      541 gtccgcacgt gcggacacag ctggtgtcct atcagaaaaa atcaaaacta taaaaatcaa
      601 taacttatta tttatctcta ttctcttcta tgaaaaccaa caaacaacac caaagttcaa
      661 ggtagctccc tccctccggt cgggcatttt gagggtcatg gttcgccata ggcgaccgcg
      721 ttagcggctt gaccttgacg atcaaaatgc ccatttaacc ttgtatctgg tgatggctcg
      781 catagtgagc catcaccatg actgacggtt ttcaggggtt tcggggcgaa gccctgaacc
      841 agtcactccg ctagcggagt gtatactggc tatgttgtat ttagcctcag agcgtaagaa
      901 gaacctgcaa gttctgatga tctggtgcct cctcgctcac tcggtcgcta cgctcctgcc
      961 gtgaggctgc ggcgggcact actgattcac tgatgctggc ttgataccgt caatgacgag
     1021 cttgcgagtt tatttatcat tgacggcgca ctgttgggta aactacctct ggtgcaatgt
     1081 ggcgcgtggc gccgccttgc acttggtaag cggtttttgt ttttttatta tattaaccgg
     1141 cgccagatag tgcgtctgtg gtttttcatt attactatca ccgcgtaaca aagctacaca
     1201 tattaatatt tttattttta tattcatttt attctcctat ttttattatt attttattgt
     1261 tgtaatggaa tgtatatatt taaaaaatag gaaaatcaaa tatatttaat gaaaatatat
     1321 aaatatattt tatcgtagct tgttttttat tttaagtgtt tgtttttgat tgttttgttt
     1381 attttataaa ttaagatacc tttgccgggt ggtggtatat aatcgctccc tactatttaa
     1441 atggtcccta ctatttaaat ggcggattat catggggata gttcgctgtg gcgaaccatc
     1501 cccctttccg agggtggtgg tcgttccgat ccgtcaagag tcgcttcgtt actgctcttg
     1561 accgctctcc tctacggaaa a
//
