LOCUS       NZ_AP025862             2511 bp    DNA     circular CON 22-APR-2024
DEFINITION  Enterobacter hormaechei strain FUJ80145 plasmid pFJMB80145_3,
            complete sequence.
ACCESSION   NZ_AP025862
VERSION     NZ_AP025862.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00490874
            Assembly: GCF_023735535.1
KEYWORDS    RefSeq.
SOURCE      Enterobacter hormaechei
  ORGANISM  Enterobacter hormaechei
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.
REFERENCE   1
  AUTHORS   Hayashi,K., Doi,Y. and Suzuki,M.
  TITLE     Rapid phylogenetic analysis of Enterobacter hormaechei using open
            reading frame content patterns acquired by Oxford Nanopore
            sequencing
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2511)
  AUTHORS   Hayashi,K., Doi,Y. and Suzuki,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-MAY-2022) Contact:Masahiro Suzuki Fujita Health
            University, School of Medicine, Microbiology; Dengakugakubo 1-98,
            Kutsukake-cho, Toyoake, Aichi 470-1192, Japan URL
            :http://www.fujita-hu.ac.jp/~microb/index.html
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.9b
            Genome Coverage                   :: 158x
            Sequencing Technology             :: MiSeq; MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_023735535.1-RS_2024_04_22
            Annotation Date                   :: 04/22/2024 05:18:23
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,305
            CDSs (total)                      :: 5,190
            Genes (coding)                    :: 5,091
            CDSs (with protein)               :: 5,091
            Genes (RNA)                       :: 115
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 99
            CDSs (without protein)            :: 99
            Pseudo Genes (ambiguous residues) :: 0 of 99
            Pseudo Genes (frameshifted)       :: 28 of 99
            Pseudo Genes (incomplete)         :: 75 of 99
            Pseudo Genes (internal stop)      :: 12 of 99
            Pseudo Genes (multiple problems)  :: 14 of 99
            Pseudo Genes (short protein)      :: 1 of 99
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            AP025862.1.
            Annotated by DFAST v.1.2.17 (https://dfast.nig.ac.jp).
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2511
                     /organism="Enterobacter hormaechei"
                     /mol_type="genomic DNA"
                     /strain="FUJ80145"
                     /host="Homo sapiens"
                     /db_xref="taxon:158836"
                     /plasmid="pFJMB80145_3"
                     /geo_loc_name="Japan:Aichi"
                     /lat_lon="35.07 N 137.00 E"
                     /collection_date="2019-06-24"
     gene            35..220
                     /locus_tag="NGJ45_RS26475"
     CDS             35..220
                     /locus_tag="NGJ45_RS26475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_032105038.1"
                     /translation="MTRQESAALNMAKFIRSQTLLLLERLEQMDLDEAAGCCEHLHDQA
                     EALYTMLNAQTGEEDA"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            1381..1524
                     /locus_tag="NGJ45_RS26480"
                     /old_locus_tag="FJMB80145_52030"
     CDS             1381..1524
                     /locus_tag="NGJ45_RS26480"
                     /old_locus_tag="FJMB80145_52030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001487656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_032610644.1"
                     /translation="MHEPPVQSDCCALSGNYRLESNPERHVKTPLAAATGKGYTRLLVQ
                     SS"
                     /name="hypothetical protein"
     gene            1952..2179
                     /locus_tag="NGJ45_RS26485"
                     /old_locus_tag="FJMB80145_52040"
     CDS             1952..2179
                     /locus_tag="NGJ45_RS26485"
                     /old_locus_tag="FJMB80145_52040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010615788.1"
                     /GO_component="GO:0005886 - plasma membrane [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="WP_021243043.1"
                     /translation="MKKIFVSVFAAAVALSALTGCTRTSYAIHTNDGRTIVSDGKPKES
                     DSGLLGYTDANGVKQQINKTDVKEVSEIPH"
                     /name="YgdI/YgdR family lipoprotein"
     Typing          complement(268..347)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="1.67e-34"
     Typing          986..1546
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.339"
                     /coverage="91.0"
                     /evalue="0.0"
ORIGIN
        1 cgcaaaaatc atcaccagac ggggaaaatc accagtgacc agacaggaat ccgccgccct
       61 caacatggcc aaatttatcc gctcacagac actcctcctc ctcgagcggc tcgaacagat
      121 ggatctggat gaggctgccg gctgctgtga gcacctgcac gatcaggccg aagcacttta
      181 caccatgctg aacgcacaga caggcgagga agatgcgtga aaatcggtga acgggtgcgc
      241 aattcagtgc gcggccgtga ggcgatggcg gggtgtcggg gcgcagccct gacctgggta
      301 tttgtgatgc cggcgcgtgc gcggtattac aaatacacat cctgtcctga gtggttcccc
      361 gggaacaggc aaaaaaaaac cggggagctg cccggaaggt aagtcaagtt agattagatt
      421 actttcactc atccataaca gcatcatgca acgacgacca tcgtccgtga cggccgcctc
      481 gtttaagtat ggacagaaat acagaaaatg ctcaggacga aatgtaatga atgcgaacgg
      541 attcaagaaa ttcgagcatg accgtcctta cggccggttc agtttcagac aaaatctgcc
      601 ggtatgcatc cagcatcatg gctccggcat ccccccggca cgccggagcc agcccgaaac
      661 aacagacaca aacaggtgtc gctcatcatc aagagtcatc aggtctccgg aagaaaaacc
      721 aaacatggct tacctcctgt taacggcaac gcagaagaaa ggtttacagg gtagcgggca
      781 ggaaaataaa aaaattgcag tcagcccgga acggctgctg aaccggtaca ggcgggttcc
      841 gggcgcagcg ccggaccagt cactcagcgc tagcggagtg tatactggct aaaatgtaac
      901 accgcagtaa cgcatagcat aactgctaca taagacaggc gcagaaaatg aaagaaaacg
      961 cgtcaggaga aaatgtaata caggatatat tccgcttcct cgctcactca ctcgctgcgc
     1021 tcggtcgttc ggctgcggcg agcggtacgg gcttacgggt ggagcagaaa tttcctaggg
     1081 gatgccagct aggggatgcc aggaagatac ttagcgaaga aggcataagg ccgcgccgaa
     1141 gccgtttttc cataggctcc gcccccctga cgagcatcac gaaatctgac gctcaaatca
     1201 gtggtggcga aacccgatgc ggcttaaaga taccaggcgt ttccccctga tggctccctc
     1261 gtgctccccc gcattcctgc ctttcggttt accggtgtca ctccgctgtt atggccgcgg
     1321 tttctcattc cacgcctgac actcggttcc gggaaggcag ttcgctccag gatggactgt
     1381 atgcacgaac cccccgttca gtccgactgc tgcgccttat ccggtaacta tcgtcttgag
     1441 tccaacccgg aaagacacgt aaaaacgcca ctggcagcgg ccactggtaa ggggtataca
     1501 agattactgg tgcagagttc ttgaagttga cgcctgactg cggctacact agaaggacaa
     1561 atttggtggc agcggtcttg tacaccctgt taccacggtt cagaaacttg ccggtttgct
     1621 gaaccttcga aaaaccacct tgccgggtgg ttttttcgtt tacagggcaa gagattacgc
     1681 gcgaaaaaaa aggatctcaa gaagatcctt ttataaatta gacatccaac ctcacaaaga
     1741 ggaatactta aatcatcttg gtatatgtat cggtcggatt acatcagata taagcccgca
     1801 ctgccccctc cccgccagac accacacttt aaccataaca cctcgcacct aactcgatat
     1861 gcagcccacc atcaagcctc ttttcacata aaaaatgacc tatagttaga tggttagtga
     1921 ccaaaactga tatggataaa aggagctggc tttgaaaaag atttttgttt ccgtgttcgc
     1981 agcggcagtt gcgctttcag ccctcaccgg ctgcacgcgc acaagctatg ccatacacac
     2041 caatgacggg cgcactattg tcagcgacgg caaacctaaa gaatcagact caggcctgct
     2101 tggctataca gacgcgaatg gtgtcaaaca gcagatcaat aaaaccgacg ttaaagaagt
     2161 ctccgaaatt ccgcactgag catcttctcc gaaaaaggcc gctaatgtgg cctttttctt
     2221 tacctggggt tctccgccaa aatcccagca aattgcacca ccaaagctaa aagcttccag
     2281 ggttgtctaa aaagcacaag acattagagg aagtgcggtt tttataatca agccccccaa
     2341 gaatttacca taacatccgt tgcccgcacc gcctcagacg cactcagcgc ttttctgacg
     2401 gaaccatgac caaaaaccac aacaaaccac cccggaaccc gccagaaacg ctcctgttaa
     2461 attttaacgg catgcatgac tatgcaccag aatgacggca tgctcttttc a
//
