LOCUS       NZ_AP024954             2855 bp    DNA     circular CON 30-JAN-2024
DEFINITION  Aeromonas caviae strain KAM345 plasmid pKAM345_6, complete sequence.
ACCESSION   NZ_AP024954
VERSION     NZ_AP024954.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00294561
            Assembly: GCF_019972775.1
KEYWORDS    RefSeq.
SOURCE      Aeromonas caviae
  ORGANISM  Aeromonas caviae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Aeromonadales;
            Aeromonadaceae; Aeromonas.
REFERENCE   1
  AUTHORS   Maehana,S., Suzuki,M. and Kitasato,H.
  TITLE     Draft genome sequence of carbapenem-resistant Aeromonas spp. in
            Japan
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2855)
  AUTHORS   Maehana,S., Suzuki,M. and Kitasato,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUL-2021) Contact:Shotaro Maehana Kitasato university,
            Allied Health Sciences; 1-15-1, Kitasato, Minami-ku, Sagamihara,
            Kanagawa 252-0373, Japan URL
            :https://www.kitasato-u.ac.jp/ahs/english/index.htmltmRNA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8.0
            Genome Coverage                   :: 193x
            Sequencing Technology             :: Illumina HiSeq X; ONT MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/30/2024 10:21:22
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,616
            CDSs (total)                      :: 4,457
            Genes (coding)                    :: 4,339
            CDSs (with protein)               :: 4,339
            Genes (RNA)                       :: 159
            rRNAs                             :: 11, 10, 10 (5S, 16S, 23S)
            complete rRNAs                    :: 11, 10, 10 (5S, 16S, 23S)
            tRNAs                             :: 122
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 30 of 118
            Pseudo Genes (incomplete)         :: 89 of 118
            Pseudo Genes (internal stop)      :: 12 of 118
            Pseudo Genes (multiple problems)  :: 10 of 118
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            AP024954.1.
            Annotated at DFAST https://dfast.nig.ac.jp/
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2855
                     /organism="Aeromonas caviae"
                     /mol_type="genomic DNA"
                     /strain="KAM345"
                     /db_xref="taxon:648"
                     /plasmid="pKAM345_6"
                     /geo_loc_name="Japan:Kanagawa"
                     /collection_date="2018"
     gene            complement(join(2040..2855,1..261))
                     /locus_tag="LDN68_RS23080"
     CDS             complement(join(2040..2855,1..261))
                     /locus_tag="LDN68_RS23080"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="phage/plasmid replication protein, II/X family"
                     /protein_id="WP_223918473.1"
                     /translation="MADWISARIACNHSEEIAGGAMVNYKDHSNLDIHNAEWFFTKPLP
                     VVGSHDANVRIKTSAFSGQDESGRELHIDGNLVKFFQGHNLFGSHDIVGLVSAFMDHLC
                     GIPQLGLCPTDFQRQSWRNGNFQLGRVDVTTMYQLRNRNDVLSWLATAEHTTTMTHRGR
                     GQLTKGSTLYYGKHSRRWSLKFYSKGEELSAKGHQLPLTIPNRDHLIEYAQPALRCELT
                     LRSMQLKQTELQLAANWPRTAEGISQILQHYMKGLNMSDVRTLPAEALDSLPSGCRLAY
                     QTWIEGHDLKTMLVRRTFYHYRRLLLQHGVDIANVQPRENANVVKLYRVLEAVPMAIPD
                     WARGTPLYFDPTANKRTA"
                     /name="phage/plasmid replication protein, II/X family"
     gene            complement(442..738)
                     /locus_tag="LDN68_RS23085"
                     /old_locus_tag="KAM345_044790"
     CDS             complement(442..738)
                     /locus_tag="LDN68_RS23085"
                     /old_locus_tag="KAM345_044790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008054160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_116678057.1"
                     /translation="MTGQLLNVFKSPVGVNGEGKEFGGQHKIQILGAVSLQNGETQNKL
                     VDLTCHDVAAFEPHQGKSVTFPVGVMAQGKGQVIYYIPKGAKPELAGGLGAKF"
                     /name="hypothetical protein"
     gene            complement(765..1070)
                     /locus_tag="LDN68_RS23090"
                     /old_locus_tag="KAM345_044800"
     CDS             complement(765..1070)
                     /locus_tag="LDN68_RS23090"
                     /old_locus_tag="KAM345_044800"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_223918472.1"
                     /translation="MNNNEPAKIDIFVSEITRLGESQYVGAVFPVQARLQAPLYGFVEA
                     FTAKAGTSRNKVLNQLIEIGIEEAMKALPPDVAADIRGHAGQVIMDDLKNAKKDEM"
                     /name="hypothetical protein"
ORIGIN
        1 aaacaggtta tgaccctgaa agaacttcac caaattgcca tctatgtgca gctcgcgccc
       61 gctttcatcc tgcccactaa acgccgaggt cttgatccta acgttagcat catgggatcc
      121 aacaactggc agcggcttag taaaaaacca ctctgcattg tgaatgtcta aattggagtg
      181 atccttgtag ttaaccatag cgccgcctgc aatctcctca gagtgattgc aggctatgcg
      241 ggcggaaatc cagtcggcca ttatcatcga tagtgcattc caagacggat gttcaaaatt
      301 ggatttgtac caatttggta caaaagtgca ggtggcctat cggtagtttt gtctcagttt
      361 gagacaaaag tgcactgtca attcgtaagc atgagtgcaa gccttgcaca aaagtgcggt
      421 attacaatac cgcactcccc atcaaaactt agccccgagg ccaccagcca attcgggctt
      481 tgcccccttc gggatgtagt aaataacctg ccccttaccc tgtgccatga caccaacagg
      541 gaacgttaca gatttaccct ggtgcggctc gaaggctgcc acatcgtgac aggttaggtc
      601 gacaagtttg ttttgggtct caccattctg gaggcttaca gcccccaaga tttggatctt
      661 gtgttggccc ccaaactctt tgccttcccc gttcacgcca accggagatt tgaagacgtt
      721 aagcagttgt ccggtcatca gtaacattcc ctgcatatgc ggcctcacat ctcgtctttt
      781 ttggcgtttt tgaggtcatc catgatgacc tgtccggcat gaccacgaat atcggcagca
      841 acatcaggtg gaagggcctt catagcctct tcgatgccta tctcgatgag ctggttaaga
      901 accttgttac ggctggtgcc agccttggct gtaaaggctt caacaaagcc atagagcggc
      961 gcctgcaagc gggcctgaac tggaaatact gcgccgacat actgggattc accgaggcgg
     1021 gtaatctcgc tgacgaaaat atcaatcttt gctggttcgt tattgttcat atcaaatcac
     1081 cttgagttat tgtgaatcat cgaatgaatc atgatgcctc attaatgaat tgtcaacatc
     1141 acagggcgct gtagcgtttg cctccctcag tagcggagac ccttaaaatc cggttttgca
     1201 gggaaggggg ggttccagtc tctggggtag atgggcgtgt tccgccgccc gccttccgat
     1261 ggatccatcg acagcagggg gcggcttgta ggggctaacg cccctgttcg ttggggcggt
     1321 gactgtgcgg tatttcggta actgttacca ataacctcgg ggggccgact cgtcggcgct
     1381 atcgctcggc tcgctcccgc ttcgactcga cgggccccca gagcttgatg gtgtcattcc
     1441 tcacggcggt gaactcacct tcaaggcggt cagcgattat tcgtaacagt gacgaataat
     1501 tgtcttcttg tgggatcagt tcagcgagct ctacaagggc gcatacggca ttgcctagag
     1561 cattcaggga gtaatagcta ttggtggtaa gatcggtgct agccatgatg acctctgtgt
     1621 aaggttgatt ggtgagaggc gcaatggggg ttccagccct attgcgtctc gtccatttga
     1681 tcacctgtca gagttatttt caacctgccc gcctatcggc ctttctcgtc attgtcgctg
     1741 cgcgctctcg ctccgcttcc tcgtggcggc cttggcgtca aattgccatt ttgattagtc
     1801 aggatcgggg tttgatttac ggtcacagtg acgataatta agggcctcgc tgggagcgtg
     1861 gcccgaaggg gtagcgagca gggaggggcg gggttcgggg tgcaaccccg tagcgtgttg
     1921 ccgtccgtcc tgcccctgtg cgtcctacgt ccatcccagt aacaggccgt ccagcagcac
     1981 gcgccgcaat gcccgccgaa cgatgacacc cccagtgggg gccccgtcat ggttcgcggt
     2041 caagcggtgc gcttatttgc ggtcgggtcg aagtaaaggg gggttccacg tgcccaatca
     2101 gggatggcca tggggacggc ttcgagcact cggtagagct taaccacgtt ggcattttcg
     2161 cgtggctgga cgttcgcaat atcaacgcca tgctgtagca gcaagcggcg gtaatgatag
     2221 aaagttcgac gcacaagcat ggtctttaag tcgtgcccct cgatccatgt ctggtatgcc
     2281 aagcgacagc ctgaaggcag tgaatcgagc gcctcagcgg gcaatgtgcg aacgtctgac
     2341 atgttaagcc ctttcatgta gtgctgaagt atctgggata taccctccgc agttcgcggc
     2401 cagtttgcag ctaactggag ttcggtttgc ttaagctgca ttgagcgtaa agtcagttca
     2461 catcttagcg caggttgcgc gtattcaata aggtgatccc gattcgggat tgtaagggga
     2521 agctgatgcc ccttagctga aagctcttcc cccttggagt aaaacttaag tgaccagcgg
     2581 cgcgaatgct tgccgtagta gagggttgag cccttggtaa gctgcccgcg tccacggtgc
     2641 gtcatggtgg tggtgtgctc ggcagtggcg agccatgaaa gtacgtcgtt acgatttcga
     2701 agctggtaca tcgtagttac gtctacacgg ccaagctgga aattaccatt acgccaagat
     2761 tgacgctgaa aatcggtagg gcagagacca agctgaggga tgccacacag gtgatccatg
     2821 aaggcgctga caagacccac aatgtcatgg ctacc
//
