LOCUS       NZ_AB983195             2908 bp    DNA     circular CON 20-MAY-2024
DEFINITION  Staphylococcus aureus strain OC3 plasmid pOC3, complete sequence.
ACCESSION   NZ_AB983195
VERSION     NZ_AB983195.1
DBLINK      BioProject: PRJNA224116
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1
  AUTHORS   Khokhlova,O.E., Hung,W.C., Wan,T.W., Iwao,Y., Takano,T., Higuchi,W.,
            Yachenko,S.V., Teplyakova,O.V., Kamshilova,V.V., Kotlovsky,Y.V.,
            Nishiyama,A., Reva,I.V., Sidorenko,S.V., Peryanova,O.V., Reva,G.V.,
            Teng,L.J., Salmina,A.B. and Yamamoto,T.
  TITLE     Healthcare- and Community-Associated Methicillin-Resistant
            Staphylococcus aureus (MRSA) and Fatal Pneumonia with Pediatric
            Deaths in Krasnoyarsk, Siberian Russia: Unique MRSA's Multiple
            Virulence Factors, Genome, and Stepwise Evolution
  JOURNAL   PLoS One 10 (6), e0128017 (2015)
   PUBMED   26047024
  REMARK    DOI:10.1371/journal.pone.0128017 Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2908)
  AUTHORS   Yamamoto,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-AUG-2014) Contact:Tatsuo Yamamoto International
            Medical Education and Research Center; Fukusumi Building II, 1-86-12
            Higashinakadori, Chuo-ku, Niigata 951-8116, Japan
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009941465.1-RS_2024_05_20
            Annotation Date                   :: 05/20/2024 01:46:38
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2
            CDSs (total)                      :: 2
            Genes (coding)                    :: 1
            CDSs (with protein)               :: 1
            Genes (RNA)                       :: 0
            tRNAs                             :: 0
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 1
            CDSs (without protein)            :: 1
            Pseudo Genes (ambiguous residues) :: 0 of 1
            Pseudo Genes (frameshifted)       :: 1 of 1
            Pseudo Genes (incomplete)         :: 0 of 1
            Pseudo Genes (internal stop)      :: 0 of 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            AB983195.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2908
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="OC3"
                     /db_xref="taxon:1280"
                     /plasmid="pOC3"
     gene            complement(341..1264)
                     /locus_tag="HXC81_RS00005"
     CDS             complement(341..1264)
                     /locus_tag="HXC81_RS00005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002499696.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_046377120.1"
                     /translation="MEKYTEKKQRNQVFQKFIKRHIGENQMDLVEDCNTFLSFVADKTL
                     EKQKLYKANSCKNRFCPVCAWRKARKDALGLSLMMQYIKQQEKKEFIFLTLTTPNVMSD
                     ELENEIKRYNNSFRKLIKRKKVGSVIKGYVRKLEITYNKKRDDYNPHFHVLIAVNKSYF
                     TDKRYYISQQEWLDLWRDVTGISEITQVQVQKIRQNNNKELYEMAKYSGKDSDYLINQK
                     VFDAFYKSLKGKQVLVYSGLFKEVKKKLKNGDLDYLKEIDPTEYIYQIFYIWKQKEYLA
                     SELYDLTEQEKREINHKMIDEIEEEQ"
                     /name="protein rep"
     gene            1734..2453
                     /gene="catA"
                     /locus_tag="HXC81_RS00010"
                     /pseudo=""
     ARG             1735..2381
                     /name="catA"
                     /gene="catA"
                     /gene_name="type A-9 chloramphenicol O-acetyltransferase"
                     /tool="amrfinderplus"
                     /drug_class="PHENICOL"
                     /identity="100.0"
                     /coverage="100.0"
     ARG             1735..2384
                     /name="Streptococcus suis chloramphenicol
                     acetyltransferase"
                     /gene="Streptococcus suis chloramphenicol
                     acetyltransferase"
                     /gene_name="chloramphenicol acetyltransferase (CAT)"
                     /tool="rgi"
                     /drug_class="phenicol antibiotic"
                     /identity="94.91"
                     /coverage="100.0"
     Typing          complement(342..1276)
                     /name="rep_cluster_1230"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.786"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 aagcttttaa aaagcaaata tgagccaaat aaatatattc taattctaca aacaaaaatt
       61 tgagcaaatt cagtgtcgat tttttaagac actgcccagt tacatgcaaa ttaaaatttt
      121 catgattttt tatagttcct aacagggtta aaatttgtat aacgaaagta taatgtttat
      181 ataacgttag tataataaag cattttaaca ttatactttt gataatcgtt tatcgtcgtc
      241 atcacaataa cttttaaaat actcgtgcat aattcaacag ctgacctccc aataactaca
      301 tggtgttatc gggaggtcag ctgttagcac ttatattttg ttattgttct tcctcaattt
      361 cgtctatcat tttgtgatta atttctcttt tttcttgttc tgttaagtca taaagttcac
      421 tagctaaata ctctttttgt ttccaaatat aaaaaatttg atagatatat tcggttggat
      481 caatttcttt taagtaatct aaatccccat tttttaattt ctttttaacc tctttaaata
      541 atcctgaata aactaatacc tgtttacctt taagtgattt ataaaatgca tcaaagactt
      601 tttgatttat taaataatca ctatctttac cagaatactt agccatttca tataattctt
      661 tattattatt ttgtcttatt ttttgaactt gaacttgtgt tatttctgaa atgcccgtta
      721 catcacgcca taaatctaac cattcttgtt ggctaatata atatctttta tctgtgaaat
      781 acgatttatt tactgcaatt aacacatgaa aatgaggatt ataatcatct ctttttttat
      841 tatatgtaat ctctaactta cgaacatatc cctttataac actacctact ttttttctct
      901 ttataagttt tctaaaagaa ttattataac gttttatttc attttctaat tcatcactca
      961 ttacattagg tgtagtcaaa gttaaaaaga taaactcctt tttctcttgc tgcttaatat
     1021 attgcatcat caaagataaa cccaatgcat cttttctagc ttttctccaa gcacagacag
     1081 gacaaaatcg atttttacaa gaattagctt tatataattt ctgtttttct aaagttttat
     1141 cagctacaaa agacagaaat gtattgcaat cttcaactaa atccatttga ttctctccaa
     1201 tatgacgttt aataaatttc tgaaatactt gatttctttg ttttttctca gtatactttt
     1261 ccatgttata acacataaaa acaacttagt tttcacaaac tatgacaata aaaaaagttg
     1321 ttttttcccc tttctatgta tgttttttac tagtcattta aaacgataca ttaataggta
     1381 cgaaaaagca actttttttg cgcttaaaac cagtcatacc aataacttaa gggtaactag
     1441 cctcgccggc aatagttacc cttattatca agataagaaa gaaaaggatt tttcgctacg
     1501 ctcaaatcct ttaaaaaaac acaaaagacc acatttttta atgtggtctt ttattcttca
     1561 actaaagcac ccattagttc aacaaacgaa aattggataa agtgggatat ttttaaaata
     1621 tatatttatg ttacagtaat attgactttt aaaaaaggat tgattctaat gaagaaagca
     1681 gacaagtaag cctcctaaat tcactttaga taaaaattta ggaggcatat caaatgaact
     1741 ttaataaaat tgatttagac aattggaaga gaaaagagat atttaatcat tatttgaacc
     1801 aacaaacgac ttttagtata accacagaaa ttgatattag tgttttatac cgaaacataa
     1861 aacaagaagg atataaattt taccctgcat ttattttctt agtgacaagg gtgataaact
     1921 caaatacagc ttttagaact ggttacaata gcgacggaga gttaggttat tgggataagt
     1981 tagagccact ttatacaatt tttgatggtg tatctaaaac attctctggt atttggactc
     2041 ctgtaaagaa tgacttcaaa gagttttatg atttatacct ttctgatgta gagaaatata
     2101 atggttcggg gaaattgttt cccaaaacac ctatacctga aaatgctttt tctctttcta
     2161 ttattccatg gacttcattt actgggttta acttaaatat caataataat agtaattacc
     2221 ttctacccat tattacagca ggaaaattca ttaataaagg taattcaata tatttaccgc
     2281 tatctttaca ggtacatcat tctgtttgtg atggttatca tgcaggattg tttatgaact
     2341 ctattcagga attgtcagat aggcctaatg actggctttt ataatatgag ataatgccga
     2401 ctgtactttt tacagtcggt tttctaatgt cactaacctg ccccgttagt tgaagaaggt
     2461 ttttatatta cagctccaga tccatatcct tctttttctg aaccgacttc tcctttttcg
     2521 cttctttatt ccaattgctt tattgacgtt gagcctcgga acccttaaca atcccaaaac
     2581 ttgtcgaatg gtcggcttaa tagctcacgc tatgccgaca ttcgtctgca agtttagtta
     2641 agggttcttc tcaacgcaca ataaattttc tcggcataaa tgcgtggtct aatttttatt
     2701 tttaataacc ttgatagcaa aaaatgccat tccaatacaa aaccacatac ctataatcga
     2761 taaccacata acagtcataa aaccactcct ttttaacaaa ctttatcaca agaaatattt
     2821 aaattttaaa tgcctttatt ttgaatttta aggggcattt taaagattta ggggtaaatc
     2881 atatagtttt atgcctaaaa acctacag
//
