LOCUS       NC_024963               2458 bp    DNA     circular CON 03-MAY-2024
DEFINITION  Staphylococcus aureus plasmid pSWS371, complete sequence.
ACCESSION   NC_024963
VERSION     NC_024963.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14229236
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1
  AUTHORS   Wendlandt,S., Kadlec,K., Fessler,A.T., van Duijkeren,E. and
            Schwarz,S.
  TITLE     Two different erm(C)-carrying plasmids in the same
            methicillin-resistant Staphylococcus aureus CC398 isolate from a
            broiler farm
  JOURNAL   Vet Microbiol 171 (3-4), 382-387 (2014)
   PUBMED   24553412
REFERENCE   2  (bases 1 to 2458)
  AUTHORS   Schwarz,S.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-JUL-2013) Schwarz S.P., Hoeltystr. 10, Institute of
            Farm Animal Genetics (FLI), 31535 Neustadt-Mariensee, N/A, GERMANY
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Name              :: GCF_009955945.2-RS_2024_05_03
            Annotation Date              :: 05/03/2024 03:48:41
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.7
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 3
            CDSs (total)                 :: 3
            Genes (coding)               :: 3
            CDSs (with protein)          :: 3
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            HG380317.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2458
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /isolate="MRSA37"
                     /isolation_source="dust from broiler house"
                     /db_xref="taxon:1280"
                     /plasmid="pSWS371"
                     /geo_loc_name="Netherlands"
     gene            32..91
                     /gene="ermCL"
                     /locus_tag="HXG44_RS00005"
                     /old_locus_tag="D646_p17001"
     CDS             32..91
                     /gene="ermCL"
                     /locus_tag="HXG44_RS00005"
                     /old_locus_tag="D646_p17001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002497446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA methylase leader peptide ErmCL"
                     /protein_id="WP_002497446.1"
                     /translation="MGIFSIFVISTVHYQPNKK"
                     /name="ermCL"
     gene            136..870
                     /gene="erm(C)"
                     /locus_tag="HXG44_RS00010"
                     /old_locus_tag="D646_p17002"
     ARG             137..867
                     /name="erm(C)"
                     /gene="erm(C)"
                     /gene_name="23S rRNA (adenine(2058)-N(6))-methyltransferase
                     Erm(C)"
                     /tool="amrfinderplus"
                     /drug_class="LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN"
                     /identity="100.0"
                     /coverage="100.0"
     gene            1319..1795
                     /locus_tag="HXG44_RS00015"
                     /old_locus_tag="D646_p17004"
     CDS             1319..1795
                     /locus_tag="HXG44_RS00015"
                     /old_locus_tag="D646_p17004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000664727.1"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA];
                     GO:0006276 - plasmid maintenance [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="WP_000664727.1"
                     /translation="MKERYGTVYKGSQRLIDEESGEVIEVDKLYRKQTSGNFVKAYIVQ
                     LISMLDMIGGKKLKIVNYILDNVHLSNNTMIATTREIAKATGTSLQTVITTLKILEEGN
                     IIKRKTGVLMLNPELLMRGDDQKQKYLLLEFGNFEQEANEKQENALSDYYSFKD"
                     /name="replication/maintenance protein RepL"
     ARG             137..870
                     /name="ErmC"
                     /gene="ErmC"
                     /gene_name="Erm 23S ribosomal RNA methyltransferase"
                     /tool="rgi"
                     /drug_class="macrolide antibiotic; lincosamide antibiotic;
                     streptogramin antibiotic; streptogramin A antibiotic;
                     streptogramin B antibiotic"
                     /identity="99.59"
                     /coverage="100.0"
     Typing          1320..1805
                     /name="rep_cluster_1947"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.591"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 aattatacta attttataag gaggaaaaaa tatgggcatt tttagtattt ttgtaatcag
       61 cacagttcat tatcaaccaa acaaaaaata agtggttata atgaatcgtt aataagcaaa
      121 ttaaagaggg ttataatgaa cgagaaaaat ataaaacaca gtcaaaactt tattacttca
      181 aaacataata tagataaaat aatgacaaat ataagattaa atgaacatga taatatcttt
      241 gaaatcggct caggaaaagg gcattttacc cttgaattag tacagaggtg taatttcgta
      301 actgccattg aaatagacca taaattatgc aaaactacag aaaataaact tgttgatcac
      361 gataatttcc aagttttaaa caaggatata ttgcagttta aatttcctaa aaaccaatcc
      421 tataaaatat ttggtaatat accttataac ataagtacgg atataatacg caaaattgtt
      481 tttgatagta tagctgatga gatttattta atcgtggaat acgggtttgc taaaagatta
      541 ttaaatacaa aacgctcatt ggcattattt ttaatggcag aagttgatat ttctatatta
      601 agtatggttc caagagaata ttttcatcct aaacctaaag tgaatagctc acttatcaga
      661 ttaaatagaa aaaaatcaag aatatcacac aaagataaac agaagtataa ttatttcgtt
      721 atgaaatggg ttaacaaaga atacaagaaa atatttacaa aaaatcaatt taacaattcc
      781 ttaaaacatg caggaattga cgatttaaac aatattagct ttgaacaatt cttatctctt
      841 ttcaatagct ataaattatt taataagtaa gttaagggat gcataaactg catcccttaa
      901 cttgtttttc gtgtacctat tttttgtgaa tcgattatgt cttttgcgca ttcacttctt
      961 ttctatataa atatgagcga agcgaataag cgtcggaaaa gcagcaaaaa gtttcctttt
     1021 tgctgttgga gcatgggggt tcagggggtg cagtatctga cgtcaatgcc gagcgaaagc
     1081 gagccgaaag ggtagcattt acgttagata accccctgat atgctccgac gctttatata
     1141 gaaaagaaga ttcaactagg taaaatctta atataggttg agatgataag gtttataagg
     1201 aatttgtttg ttctaatttt tcactcattt tgttctaatt tcttttaaca aatgttcttt
     1261 tttttttaga acagttatga tatagttaga atagtttaaa ataaggagtg agaaaaagat
     1321 gaaagaaaga tatggaacag tctataaagg ctctcagagg ctcatagacg aagaaagtgg
     1381 agaagtcata gaggtagaca agttataccg taaacaaacg tctggtaact tcgtaaaggc
     1441 atatatagtg caattaataa gtatgttaga tatgattggc ggaaaaaaac ttaaaatcgt
     1501 taactatatc ctagataatg tccacttaag taacaataca atgatagcta caacaagaga
     1561 aatagcaaaa gctacaggaa caagtctaca aacagtaata acaacactta aaatcttaga
     1621 agaaggaaat attataaaaa gaaaaactgg agtattaatg ttaaaccctg aactactaat
     1681 gagaggcgac gaccaaaaac aaaaatacct cttactcgaa tttgggaact ttgagcaaga
     1741 ggcaaatgaa aaacaagaaa atgcattatc tgattattat tctttcaagg actagtataa
     1801 cataaaatcg tctacaaata gacaaaaaac ctgcacgctt aatgtagatc aaaagcttaa
     1861 cgcaaatgaa atagattgac ctcccaataa caccacgtag ttattgggag gtcaatctat
     1921 gaaatgcgat taagcttttt ctaattcaca taagcgtgca ggtttaaagt acataaaaaa
     1981 tataatgaaa aaaagcatca ttatactaac gttataccaa cattatactc tcattatact
     2041 aattgcttat tccaatttcc tattggttgg aaccaacagg cgttagtgtg ttgttgagtt
     2101 ggtactttca tgggattaat cccatgaaac ccccaaccaa ctcgccaaag ctttggctaa
     2161 cacacacgcc attccaacca atagttttct cggcataaag ccatgctctg acgcttaaat
     2221 gcactaatgc cttaaaaaaa cattaaagtc taacacacta gacttattta cttcgtaatt
     2281 aagtcgttaa accgtgtgct ctacgaccaa aagtataaaa cctttaagaa ctttcttttt
     2341 tcttgtaaaa aaagaaacta gataaatctc tcatatcttt tattcaataa tcgcatcaga
     2401 ttgcagtata aatttaacga tcactcatca tgttcatatt tatcagagct cgtgctat
//
