LOCUS       NC_023320               2656 bp    DNA     circular CON 15-MAY-2024
DEFINITION  Proteus mirabilis plasmid pRS12-189, complete sequence.
ACCESSION   NC_023320
VERSION     NC_023320.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14225975
KEYWORDS    RefSeq.
SOURCE      Proteus mirabilis
  ORGANISM  Proteus mirabilis
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Morganellaceae; Proteus.
REFERENCE   1  (bases 1 to 2656)
  AUTHORS   Guillard,T., Grillon,A., de Champs,C., Cartier,C., Madoux,J.,
            Bercot,B., Lebreil,A.L., Lozniewski,A., Riahi,J., Vernet-Garnier,V.
            and Cambau,E.
  TITLE     Mobile insertion cassette elements found in small non-transmissible
            plasmids in Proteeae may explain qnrD mobilization
  JOURNAL   PLoS One 9 (2), e87801 (2014)
   PUBMED   24504382
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2656)
  AUTHORS   Guillard,T., Grillon,A., de Champs,C., Cartier,C., Madoux,J.,
            Bercot,B., Riahi,J., Vernet-Garnier,V., Lozniewski,A. and Cambau,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-JUL-2013) Laboratoire de
            Bacteriologie-Virologie-Hygiene, CHU REIMS, Avenue du General
            Koenig, Reims 51092, France
COMMENT     ##Assembly-Data-START##
            Sequencing Technology        :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Name              :: GCF_009961575.1-RS_2024_05_15
            Annotation Date              :: 05/15/2024 01:29:17
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.7
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 2
            CDSs (total)                 :: 2
            Genes (coding)               :: 2
            CDSs (with protein)          :: 2
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            KF364956.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2656
                     /organism="Proteus mirabilis"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:584"
                     /plasmid="pRS12-189"
                     /geo_loc_name="France"
                     /collection_date="2011-02-18"
     gene            join(2336..2656,1..93)
                     /locus_tag="HUF40_RS00005"
                     /old_locus_tag="D735_p8001"
     CDS             join(2336..2656,1..93)
                     /locus_tag="HUF40_RS00005"
                     /old_locus_tag="D735_p8001"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_024128020.1"
                     /translation="MSQLFRLASPEDYEYIEKLNLWELSFDKRPVQGVRCEDPVIGAEK
                     YNQGREKFKALASRHKKHWKPNGLTFSELIRWAIECGTPEQCQLVLALYHCTNDDDYQA
                     MGINVSPIIFFTGKNQRLLGDISMLKQLEEKVR"
                     /name="hypothetical protein"
     gene            1054..1698
                     /locus_tag="HUF40_RS00010"
                     /old_locus_tag="D735_p8003"
     CDS             1054..1698
                     /locus_tag="HUF40_RS00010"
                     /old_locus_tag="D735_p8003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032495680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolone resistance pentapeptide repeat protein
                     QnrD1"
                     /protein_id="WP_012634451.1"
                     /translation="MEKHFINEKFSRDQFTGNRVKNIAFSNCDFSGVDLTDTEFVDCSF
                     YDRNSLEGCDFNRAKLKNASFKSCDLSMSNFKNISALGLEISECLAQGADFRGANFMNM
                     ITTRSWFCSAYITKTNLSYANFSRVILEKCELWENRWNGTVITGAVFRGSDLSCGEFSS
                     FDWSLADFTGCDLTGGALGELDARRINLDGVKLDGEQALQLVESLGVIVHR"
                     /name="quinolone resistance pentapeptide repeat protein
                     QnrD1"
     ARG             1055..1695
                     /name="qnrD1"
                     /gene="qnrD1"
                     /gene_name="quinolone resistance pentapeptide repeat
                     protein QnrD1"
                     /tool="amrfinderplus"
                     /drug_class="QUINOLONE"
                     /identity="100.0"
                     /coverage="100.0"
     Typing          805..960
                     /name="Col3M"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.089"
                     /coverage="100.0"
                     /evalue="2.29e-71"
ORIGIN
        1 aatgtcagtc cgatcatctt tttcacaggt aaaaatcaac ggttattagg tgatatttcg
       61 atgctaaaac agctcgaaga aaaggtgcgc tgacgttagg tttacctatt attttatgta
      121 ttatcctatc tattattcta tctcttattt tatctatttc gtctgtaata ggtagaataa
      181 tacatagaat aagatacaga ataatagata gacacaagat gacgttgtgt tatttcttac
      241 ccattaatcc acctgttatt ctacctatta ctttacccgt tattgcaccc aatttaggta
      301 taacgggcag aataacgggt gaaataatgg gtagaatcat agttttacta acttgcaccc
      361 catgatactt tcagtatcaa tgccactcat tttctggacg aaaatgaatg acataaggct
      421 ccgccctctg gctattttct tcggctggac gcctgcgaaa aaaaccattc acccaagccc
      481 gtcaaactca ctgcgttcgt ctgaccaccc ccttttttcg cccctgtatt tggtcgctca
      541 aaaatgtggt ggtcagacgc ttcgcttgac ggggggcttt gcccccaaaa cgaaacacgt
      601 tcactggggt tcacttgcca tcgctggggc gtgtcatttc gtttcggctc cccctgtttt
      661 tccctttctt cgctggacgc tcatcaggat aaaaacaaaa agcctaccgc cctcgtttta
      721 ctcggttggt caaatcgctt cttgccacaa aacaagtttg tgactttcag cgatttcgca
      781 tcgttttact tgtcagtttg cacgatgtta aaaacgcact cagaagcccg caaaaccgtt
      841 ctaaactttc agcgtagatt tgggtgtttt atagggtgat cgtgtcttaa aatcgtttcg
      901 aggggcttta atggggatga acgggaggtt tttgctaact aactcgcccg tttaacataa
      961 aagggattgt atgaatcaat tttagctaga gtttaaggtt gttcaaatta atgtacaatg
     1021 attgcactgt ataaataacc aggtgtagca tgtatggaaa agcactttat caatgaaaag
     1081 ttttcacgag atcaatttac ggggaataga gttaaaaata ttgccttttc aaattgtgat
     1141 ttttcagggg ttgatttaac tgatactgaa tttgttgatt gtagttttta cgacaggaat
     1201 agcttggaag ggtgtgattt taatagagcc aaactaaaaa acgctagctt taaaagctgc
     1261 gatttatcaa tgagtaattt taaaaacatt agcgccttag gtcttgaaat tagtgagtgt
     1321 ttagctcaag gagctgattt tcgaggggct aattttatga atatgataac tacaaggtca
     1381 tggttttgta gtgcttatat aaccaagaca aatcttagtt acgctaattt ttctagagtc
     1441 atattagaaa agtgcgaact gtgggaaaat cgctggaatg gcactgtgat aactggcgcc
     1501 gtgtttcgtg gctccgatct ttcttgtggg gagttttcat cgtttgattg gtctttggct
     1561 gattttactg gttgtgattt aacgggtggg gcgcttggcg agcttgatgc aaggcgaatt
     1621 aatttagatg gagtgaagtt ggatggagag caggcgcttc agcttgttga gagtttaggt
     1681 gttattgttc accgataaaa tctaggtaaa aaacgcctaa tgccccaatg tggtactaat
     1741 caaaacggag cgaagcgaca tcttcatctt gtctttgctt ttctccatga tcagttattg
     1801 ggtcatggtc tcttagctcg ttaatctggc taagtttggt taggttgggc ttctttcgac
     1861 acttcgcaat ccaagaaatc cctagtccgt tgattggtgc tcttatcagg tacgcactgt
     1921 aatctttcga taccgcagcg tgattcggag gtagagccgg aatttcgttt tccggtacgt
     1981 tttactacca caatttgcct gtttatcctt tcggagaccg ggctaagtcc gagtcaatca
     2041 agtggtgcat ttgggttaat gtcgttggct ggtatttaat gagaacgtga caagcgcctc
     2101 tcacgttgct aagattggat tgcgacgtct aatctgagca acgaatgcac aagatttaga
     2161 gtaccagagc cctgtgatgc tgtcacgggg ctttgttaca tctggagctt ggtaaacctc
     2221 ataaattcaa ttcgcaacgc tcgccgcaag gcgtgaactt gtttcacgtc gaggaagcgg
     2281 aatttctcga aagccttata ctgtctccgt tcacacatga tcggagggtg tctctatgtc
     2341 tcaattattt cgtttggcat cgccagaaga ttacgaatac atcgaaaaat taaatttatg
     2401 ggaattgtca tttgataagc gaccggttca aggggttcgt tgtgaagatc cggtgatcgg
     2461 ggcagaaaaa tataatcaag ggcgtgaaaa atttaaggcg ttagcgtcac ggcataaaaa
     2521 acactggaaa ccgaacggat tgaccttttc ggagttgatc cgctgggcaa tagaatgcgg
     2581 aactccagaa caatgtcagc ttgttttagc gttataccat tgcacaaacg atgatgatta
     2641 tcaggcgatg ggaatt
//
