LOCUS       NC_022605               3011 bp    DNA     circular CON 07-DEC-2023
DEFINITION  Staphylococcus aureus subsp. aureus Z172 plasmid pZ172_2, complete
            sequence.
ACCESSION   NC_022605
VERSION     NC_022605.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02370325
            Assembly: GCF_000485885.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus subsp. aureus Z172
  ORGANISM  Staphylococcus aureus subsp. aureus Z172
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 3011)
  AUTHORS   Chen,F.J., Lauderdale,T.L., Wang,L.S. and Huang,I.W.
  TITLE     Complete Genome Sequence of Staphylococcus aureus Z172, a
            Vancomycin-Intermediate and Daptomycin-Nonsusceptible
            Methicillin-Resistant Strain Isolated in Taiwan
  JOURNAL   Genome Announc 1 (6), e01011-13 (2013)
   PUBMED   24309740
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3011)
  AUTHORS   Chen,F.-J. and Lauderdale,T.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-OCT-2013) National Institute of Infectious Diseases
            and Vaccinology, National Health Research Institutes, 35 Keyan Road,
            Zhunan 35053, Taiwan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Celera Assembler v. 7.0
            Reference-guided Assembly         :: NC_017332.1
            Genome Coverage                   :: 899x; 77x
            Sequencing Technology             :: Illumina; PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/07/2023 08:13:17
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,067
            CDSs (total)                      :: 2,987
            Genes (coding)                    :: 2,883
            CDSs (with protein)               :: 2,883
            Genes (RNA)                       :: 80
            rRNAs                             :: 6, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 60
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 104
            CDSs (without protein)            :: 104
            Pseudo Genes (ambiguous residues) :: 0 of 104
            Pseudo Genes (frameshifted)       :: 59 of 104
            Pseudo Genes (incomplete)         :: 40 of 104
            Pseudo Genes (internal stop)      :: 21 of 104
            Pseudo Genes (multiple problems)  :: 15 of 104
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP006840.1.
            Bacteria and source DNA available from Tsai-Ling Lauderdale
            (Lauderdale@nhri.org.tw), National Institute of Infectious Diseases
            and Vaccinology, National Health Research Institutes, Taiwan.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3011
                     /organism="Staphylococcus aureus subsp. aureus Z172"
                     /mol_type="genomic DNA"
                     /strain="Z172"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /sub_species="aureus"
                     /db_xref="taxon:1406863"
                     /plasmid="pZ172_2"
                     /geo_loc_name="Taiwan"
                     /lat_lon="23.99574716 N 121.5922526 E"
                     /collection_date="2010"
                     /collected_by="Tsai-Ling Lauderdale"
     gene            complement(646..1641)
                     /locus_tag="SAZ172_RS15615"
                     /old_locus_tag="SAZ172_p201"
     CDS             complement(646..1641)
                     /locus_tag="SAZ172_RS15615"
                     /old_locus_tag="SAZ172_p201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001199895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_001199895.1"
                     /translation="MQYNTTRSITENQDNKTLKDMTKSGKQRPWREKKIDNVSYADILE
                     ILKIKKAYNVKQCGNVLEFKPTDEGYLKLHKTWFCKSKLCPVCNWRRAMKNSYQAQKVI
                     EEVIKEKPKARWLFLTLSTKNAIDGDTLEQSLKHLTKAFDRLSRYKKVKQNLVGFMRST
                     EVTVNKNDGSYNQHMHVLLCVENAYFRKKENYITQEEWVNLWQKALQVDYRPVANIKAI
                     KPNQKGDKDIESAIKETSKYSVKSSDFLTDNDEKNQEIVSDLEKGLYRKRMLSYGGLLK
                     QKHKILNLDDAEDGNLINTSDEDKITDEEAKAHSITAIWNFEKQNYYLRH"
                     /name="protein rep"
     gene            2093..2674
                     /locus_tag="SAZ172_RS15625"
                     /old_locus_tag="SAZ172_p203"
     CDS             2093..2674
                     /locus_tag="SAZ172_RS15625"
                     /old_locus_tag="SAZ172_p203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000991701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000991701.1"
                     /translation="MNAIQKSVSLRKVLVISLSFLTILSMVLNFNFKEAQAQNKNNIAD
                     KNIETLNEKEIEKELDYIYGKIIVLDKDGTAKDVNLENAKSRYGYVPEGFQKLKNDIEN
                     KKKNSSISPRAVGGNYKNSNDCFYSEVLNSYGELLTGNIIAAVFDDVKAKNIKSAAKKL
                     ARIGIKGNLAGIAATMVSKDVQCTLKYGWF"
                     /name="hypothetical protein"
     Typing          complement(412..576)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="99.398"
                     /coverage="100.0"
                     /evalue="1.13e-79"
     Typing          complement(647..1641)
                     /name="rep_cluster_1017"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="96.687"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ctgtttaatt aagatttttt atttttcgtt atccaagagg cgcatttaca tacttaaaaa
       61 tgcgtcgagc taaaaccaaa atttacgtgt aataatcgaa tatacttatt ttgcatttta
      121 agggggtatt tagaacgaac tttaaaaata tatagtttta tacctgtatt atcttatttg
      181 tttcttaaaa cgcaaatatg agccaaataa atatattctg attttataat caaaaatttt
      241 ttataatcaa aaattcgatc aaacccagtg tcgatttttc ggacactgcc catttacatg
      301 caaattaaaa attagcataa aatcctttaa aacttccccc atgtttttct aaattcctgc
      361 agggcgcttt ttatcaaaaa tcgagaattt ttaatttttc tctaagaact ccgtaagagc
      421 ataaggagaa tttgctatca ttcaaaaatg ataggtctgg caaagccaga cattccaagg
      481 gttttaagta attttaaagt gatatcataa aaagctgtag tgtcacactt ttgtgacaca
      541 atatattgcg tttgtcacag ttttgtgaca ctacatacag catttgtcac aaaaataaga
      601 cagtactttt ttacaaaaaa tcaataaaaa agacatcagt catcactaat gtcttaaata
      661 ataattttgt ttttcaaaat tccaaattgc cgtaattgaa tgtgcttttg cttcttcatc
      721 tgttatttta tcttcatcac ttgtattaat taaattacca tcttcagcat cgtctaagtt
      781 taaaatttta tgcttttgtt taagcaatcc accataactt aacatacgtt ttcgatataa
      841 acctttttct aaatcactta caatttcttg atttttttcg tcattgtcag ttaaaaaatc
      901 agatgactta accgaatatt ttgatgtctc tttgattgcc gattcaatat ctttatcgcc
      961 tttttgatta ggtttaattg ctttaatatt tgcaacaggt cgataatcaa cttgtaatgc
     1021 tttttgccat aaattaaccc attcttcttg agttatataa ttctcttttt ttctaaaata
     1081 tgcattttca acacataaca aaacgtgcat atgctgatta taactaccat catttttatt
     1141 aacggtaact tctgttgaac gcataaatcc aacaagattt tgtttaacct ttttatatct
     1201 actcaaccta tcaaatgctt tagttagatg cttcaaactt tgttctaaag tatctccatc
     1261 tatcgcattt ttggttgaaa gtgttaaaaa caaccaacgt gcttttggct tttccttaat
     1321 tacttcttca atcacttttt gagcttgata actatttttc atagcacgcc tccaattaca
     1381 aactggacat agctttgatt tacaaaacca cgtcttatgt aatttcaaat aaccttcatc
     1441 ggtcggcttg aattctaaga cgttaccaca ttgttttacg ttataagcct tttttatttt
     1501 taaaatttca agtatatctg catagcttac attatctatt ttcttttctc tccatgggcg
     1561 ttgtttccca cttttcgtca tatcttttaa cgttttatta tcttgatttt cggttatact
     1621 tctagtagta ttatattgca tataaaaaga cccccagtat tatttaagat tcgacacctt
     1681 aataatataa ctggggtttt ttattgtcaa attttccttt cacgcacaaa aacacgttta
     1741 aacgctgtaa tatcaacagt tacagctata tatataaaat cgagttattt ctatatagta
     1801 tcaagacaag aagaaactcg ttttcaactc gtttcaaaaa caatctattt ctttttctct
     1861 ttatagccct ctaaacctaa ataaatcaat gtgaaaacca acgaataaat aaagctttct
     1921 aaaaagtcaa aaggattatt aaataaaatc gaattaacaa aattaaatat taaaaatacg
     1981 gacaataaaa caattaaaaa ataaataaac ttattcatat taaactcctt tgtttttata
     2041 tgttaatatt atattggatt catttaaata acaaaacaag ggggcattta taatgaatgc
     2101 aattcaaaaa agtgtatcac taagaaaagt tttagtaata tctttaagtt ttttaactat
     2161 actttcaatg gtcttgaatt ttaattttaa agaagctcaa gcccaaaaca aaaacaacat
     2221 cgcagataaa aacattgaaa ctttaaacga aaaagaaatc gaaaaagaac tagactacat
     2281 atatggcaaa attattgttt tagataaaga cggaaccgct aaagatgtta atctagaaaa
     2341 tgccaaatct agatatggat atgttcctga aggtttccaa aaactaaaga acgacataga
     2401 gaataaaaag aaaaatagct caatatcacc tagagcagtt ggtggaaact acaaaaatag
     2461 taatgactgt ttctattctg aagttttaaa ctcatatgga gaacttttaa ccggtaatat
     2521 aatcgcagca gtttttgatg atgtaaaagc caaaaacata aagagtgcag caaaaaaatt
     2581 agccagaatt ggcataaaag gaaatttagc tggaattgca gctactatgg tttcaaagga
     2641 tgtacaatgt actctgaaat acggatggtt ctaaatatat aatttattcc aattgcttta
     2701 ttgacgttga gcctcggaac ccttaacaat ccctaaactt gtcgaatcgt cggcttaata
     2761 gctcacgcta tgccgacatt cgtcttcaag tttagttaag ggttcttctc aacatcaata
     2821 aattttctcg gcataaatgc atgtttgatt atgcgtgtaa ctatccctta aataaaacat
     2881 taattgtgca ctgatttact aattattatc ccttgctttc attcacacta taatcaacac
     2941 cttaattcta aacatctgaa gtaatcataa tttttaaacc taataaaatt cgtgactatc
     3001 ttagttaaac t
//
