LOCUS       NC_022228               2472 bp    DNA     circular CON 30-APR-2024
DEFINITION  Staphylococcus aureus subsp. aureus CN1 plasmid unnamed2, complete
            sequence.
ACCESSION   NC_022228
VERSION     NC_022228.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02603420
            Assembly: GCF_000463055.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus subsp. aureus CN1
  ORGANISM  Staphylococcus aureus subsp. aureus CN1
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 2472)
  AUTHORS   Chen,Y., Chatterjee,S.S., Porcella,S.F., Yu,Y.S. and Otto,M.
  TITLE     Complete genome sequence of a Panton-Valentine leukocidin-negative
            community-associated methicillin-resistant Staphylococcus aureus
            strain of sequence type 72 from Korea
  JOURNAL   PLoS One 8 (8), e72803 (2013)
   PUBMED   23977354
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2472)
  AUTHORS   Otto,M. and Porcella,S.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-DEC-2012) Laboratory of Human Bacterial Pathogenesis,
            NIAID/NIH, 9000 Rockville Pike, Bethesda, MD 20892, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000463055.1-RS_2024_04_30
            Annotation Date                   :: 04/30/2024 00:41:30
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,729
            CDSs (total)                      :: 2,654
            Genes (coding)                    :: 2,570
            CDSs (with protein)               :: 2,570
            Genes (RNA)                       :: 75
            rRNAs                             :: 6, 5, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 5, 4 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 84
            CDSs (without protein)            :: 84
            Pseudo Genes (ambiguous residues) :: 0 of 84
            Pseudo Genes (frameshifted)       :: 52 of 84
            Pseudo Genes (incomplete)         :: 32 of 84
            Pseudo Genes (internal stop)      :: 14 of 84
            Pseudo Genes (multiple problems)  :: 13 of 84
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP003981.1.
            Source DNA/bacteria is available from Michael Otto PhD, Senior
            Investigator, Laboratory of Human Bacaterial Pathogenesis
            NIAID/NIH.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2472
                     /organism="Staphylococcus aureus subsp. aureus CN1"
                     /mol_type="genomic DNA"
                     /strain="CN1"
                     /sub_species="aureus"
                     /db_xref="taxon:1193576"
                     /plasmid="unnamed2"
     gene            84..818
                     /gene="erm(C)"
                     /locus_tag="SAKOR_RS13915"
                     /old_locus_tag="SAKOR_02720"
     ARG             85..815
                     /name="erm(C)"
                     /gene="erm(C)"
                     /gene_name="23S rRNA (adenine(2058)-N(6))-methyltransferase
                     Erm(C)"
                     /tool="amrfinderplus"
                     /drug_class="LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN"
                     /identity="100.0"
                     /coverage="100.0"
     gene            1265..1741
                     /locus_tag="SAKOR_RS13920"
                     /old_locus_tag="SAKOR_02722"
     CDS             1265..1741
                     /locus_tag="SAKOR_RS13920"
                     /old_locus_tag="SAKOR_02722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000664727.1"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA];
                     GO:0006276 - plasmid maintenance [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="WP_000664727.1"
                     /translation="MKERYGTVYKGSQRLIDEESGEVIEVDKLYRKQTSGNFVKAYIVQ
                     LISMLDMIGGKKLKIVNYILDNVHLSNNTMIATTREIAKATGTSLQTVITTLKILEEGN
                     IIKRKTGVLMLNPELLMRGDDQKQKYLLLEFGNFEQEANEKQENALSDYYSFKD"
                     /name="replication/maintenance protein RepL"
     ARG             85..818
                     /name="ErmC"
                     /gene="ErmC"
                     /gene_name="Erm 23S ribosomal RNA methyltransferase"
                     /tool="rgi"
                     /drug_class="macrolide antibiotic; lincosamide antibiotic;
                     streptogramin antibiotic; streptogramin A antibiotic;
                     streptogramin B antibiotic"
                     /identity="99.59"
                     /coverage="100.0"
     Typing          1266..1751
                     /name="rep_cluster_1947"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.591"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 attatcaacc aaacaaaaaa taagtggtta taatgaatcg ttaataagca aaattcatta
       61 taaccaaatt aaagagggtt ataatgaacg agaaaaatat aaaacacagt caaaacttta
      121 ttacttcaaa acataatata gataaaataa tgacaaatat aagattaaat gaacatgata
      181 atatctttga aatcggctca ggaaaagggc attttaccct tgaattagta cagaggtgta
      241 atttcgtaac tgccattgaa atagaccata aattatgcaa aactacagaa aataaacttg
      301 ttgatcacga taatttccaa gttttaaaca aggatatatt gcagtttaaa tttcctaaaa
      361 accaatccta taaaatattt ggtaatatac cttataacat aagtacggat ataatacgca
      421 aaattgtttt tgatagtata gctgatgaga tttatttaat cgtggaatac gggtttgcta
      481 aaagattatt aaatacaaaa cgctcattgg cattattttt aatggcagaa gttgatattt
      541 ctatattaag tatggttcca agagaatatt ttcatcctaa acctaaagtg aatagctcac
      601 ttatcagatt aaatagaaaa aaatcaagaa tatcacacaa agataaacag aagtataatt
      661 atttcgttat gaaatgggtt aacaaagaat acaagaaaat atttacaaaa aatcaattta
      721 acaattcctt aaaacatgca ggaattgacg atttaaacaa tattagcttt gaacaattct
      781 tatctctttt caatagctat aaattattta ataagtaagt taagggatgc ataaactgca
      841 tcccttaact tgtttttcgt gtacctattt tttgtgaatc gattatgtct tttgcgcatt
      901 cacttctttt ctatataaat atgagcgaag cgaataagcg tcggaaaagc agcaaaaagt
      961 ttcctttttg ctgttggagc atgggggttc agggggtgca gtatctgacg tcaatgccga
     1021 gcgaaagcga gccgaagggt agcatttacg ttagataacc ccctgatatg ctccgacgct
     1081 ttatatagaa aagaagattc aactaggtaa aatcttaata taggttgaga tgataaggtt
     1141 tataaggaat ttgtttgttc taatttttca ctcattttgt tctaatttct tttaacaaat
     1201 gttctttttt tttagaacag ttatgatata gttagaatag tttaaaataa ggagtgagaa
     1261 aaagatgaaa gaaagatatg gaacagtcta taaaggctct cagaggctca tagacgaaga
     1321 aagtggagaa gtcatagagg tagacaagtt ataccgtaaa caaacgtctg gtaacttcgt
     1381 aaaggcatat atagtgcaat taataagtat gttagatatg attggcggaa aaaaacttaa
     1441 aatcgttaac tatatcctag ataatgtcca cttaagtaac aatacaatga tagctacaac
     1501 aagagaaata gcaaaagcta caggaacaag tctacaaaca gtaataacaa cacttaaaat
     1561 cttagaagaa ggaaatatta taaaaagaaa aactggagta ttaatgttaa accctgaact
     1621 actaatgaga ggcgacgacc aaaaacaaaa atacctctta ctcgaatttg ggaactttga
     1681 gcaagaggca aatgaaaaac aagaaaatgc attatctgat tattattctt tcaaggacta
     1741 gtataacata aaatcgtcta caaatagaca aaaaacctgc acgcttaatg tagatcaaaa
     1801 gcttaacgca aatgaaatag attgacctcc caataacacc acgtagttat tgggaggtca
     1861 atctatgaaa tgcgattaag ctttttctaa ttcacataag cgtgcaggtt taaagtacat
     1921 aaaaaatata atgaaaaaaa gcatcattat actaacgtta taccaacatt atactctcat
     1981 tatactaatt gcttattcca atttcctatt ggttggaacc aacaggcgtt agtgtgttgt
     2041 tgagttggta ctttcatggg attaatccca tgaaaccccc aaccaactcg ccaaagcttt
     2101 ggctaacaca cacgccattc caaccaatag ttttctcggc ataaagccat gctctgacgc
     2161 ttaaatgcac taatgcctta aaaaaacatt aaagtctaac acactagact tatttacttc
     2221 gtaattaagt cgttaaaccg tgtgctctac gaccaaaagt ataaaacctt taagaacttt
     2281 cttttttctt gtaaaaaaag aaactagata aatctctcat atcttttatt caataatcgc
     2341 atcagattgc agtataaatt taacgatcac tcatcatgtt catatttatc agagctcgtg
     2401 ctataattat actaatttta taaggaggaa aaaatatggg catttttagt atttttgtaa
     2461 tcagcacagt tc
//
