LOCUS       NC_022227               3332 bp    DNA     circular CON 30-APR-2024
DEFINITION  Staphylococcus aureus subsp. aureus CN1 plasmid unnamed, complete
            sequence.
ACCESSION   NC_022227
VERSION     NC_022227.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02603420
            Assembly: GCF_000463055.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus subsp. aureus CN1
  ORGANISM  Staphylococcus aureus subsp. aureus CN1
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 3332)
  AUTHORS   Chen,Y., Chatterjee,S.S., Porcella,S.F., Yu,Y.S. and Otto,M.
  TITLE     Complete genome sequence of a Panton-Valentine leukocidin-negative
            community-associated methicillin-resistant Staphylococcus aureus
            strain of sequence type 72 from Korea
  JOURNAL   PLoS One 8 (8), e72803 (2013)
   PUBMED   23977354
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3332)
  AUTHORS   Otto,M. and Porcella,S.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-DEC-2012) Laboratory of Human Bacterial Pathogenesis,
            NIAID/NIH, 9000 Rockville Pike, Bethesda, MD 20892, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000463055.1-RS_2024_04_30
            Annotation Date                   :: 04/30/2024 00:41:30
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,729
            CDSs (total)                      :: 2,654
            Genes (coding)                    :: 2,570
            CDSs (with protein)               :: 2,570
            Genes (RNA)                       :: 75
            rRNAs                             :: 6, 5, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 5, 4 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 84
            CDSs (without protein)            :: 84
            Pseudo Genes (ambiguous residues) :: 0 of 84
            Pseudo Genes (frameshifted)       :: 52 of 84
            Pseudo Genes (incomplete)         :: 32 of 84
            Pseudo Genes (internal stop)      :: 14 of 84
            Pseudo Genes (multiple problems)  :: 13 of 84
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP003980.1.
            Source DNA/bacteria is available from Michael Otto PhD, Senior
            Investigator, Laboratory of Human Bacaterial Pathogenesis
            NIAID/NIH.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3332
                     /organism="Staphylococcus aureus subsp. aureus CN1"
                     /mol_type="genomic DNA"
                     /strain="CN1"
                     /sub_species="aureus"
                     /db_xref="taxon:1193576"
                     /plasmid="unnamed"
     gene            874..1491
                     /gene="cadD"
                     /locus_tag="SAKOR_RS13900"
                     /old_locus_tag="SAKOR_02717"
     ARG             875..1488
                     /name="cadD"
                     /gene="cadD"
                     /gene_name="cadmium resistance transporter CadD"
                     /tool="amrfinderplus"
                     /drug_class="CADMIUM"
                     /identity="100.0"
                     /coverage="100.0"
     gene            1510..1857
                     /locus_tag="SAKOR_RS13905"
                     /old_locus_tag="SAKOR_02718"
     CDS             1510..1857
                     /locus_tag="SAKOR_RS13905"
                     /old_locus_tag="SAKOR_02718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020366422.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA];
                     GO:0003700 - DNA-binding transcription factor activity
                     [Evidence IEA]"
                     /GO_process="GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="WP_000119690.1"
                     /translation="MSYENTCDVICVHEDKVNNALSFLEDDKSKKLLNILEKICDEKKL
                     KIILSLIKEDELCVCDISLILKMSVASTSHHLRLLYKNEVLDFYKDGKMAYYFIKDDEI
                     REFFSKNHEGF"
                     /name="metalloregulator ArsR/SmtB family transcription
                     factor"
     gene            2048..3043
                     /locus_tag="SAKOR_RS13910"
                     /old_locus_tag="SAKOR_02719"
     CDS             2048..3043
                     /locus_tag="SAKOR_RS13910"
                     /old_locus_tag="SAKOR_02719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001199895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_001199887.1"
                     /translation="MQYNTTRSITENQDNKTLKDMTKSGKQRPWREKKIDNVSYADILE
                     ILKIKKAFNVKQCGNILEFKPTDEGYLKLHKTWFCKSKLCPVCNWRRAMKNSYQAQKVI
                     EEVIKEKPKARWLFLTLSTKNAIDGDTLEQSLKHLTKAFDRLSRYKKVKQNLVGFMRST
                     EVTVNKNDGSYNQHMHVLLCVENAYFRKKENYITQEEWVNLWQRALQVDYRPVANIKAI
                     KPNKKGDKDIESAIKETSKYSVKSSDFLTDDDEKNQEIVSDLEKGLYRKRMLSYGGLLK
                     QKHKILNLDDAEDGNLINTSDEDKTTDEEEKAHSITAIWNFEKQNYYLRH"
                     /name="protein rep"
     Typing          2049..3043
                     /name="rep_cluster_1017"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gaatttagaa aaacatgggg aagttttaaa gaattttatg ctcattttta atttgcatgt
       61 aaatgggcag tgtctaaaaa actcgacact ggttttactc gaattttagt ttgtgaaatt
      121 aagatatatt tatttggctc atatttgcgt tttaaaagtt tatgtaggtt tttaggtata
      181 aaactatatg atttacccat aaatctttaa aatgacctct taaaattcaa aataaaggca
      241 tttaaaaatt aacaaaataa aaaagctact agcaaaaaac tagtagcttt tgtcttgatg
      301 tagtattaat ttttatatct gcgccacaac gccgatttct taaaacgaat ataaaaaatc
      361 gacgaaggtc gattatggtt tttgcacgcg ttcttttaga acgcataagt gcgcccttac
      421 gggatttaac tagattataa cgacgaaaaa cagacctgta aagcaataac aattaggtct
      481 accaggtaga taaagtgtac aaagtagaac cgaaaaagtt atttattttg aagatttttc
      541 gtagatataa tttgctaata aacttcctaa aactgaataa agaaaaatag ttaaactcat
      601 gtaatcactc cataattctg aagtgtctcc atgtctacgc atagacacgc atttatgccg
      661 agaaaattta ttgtgcgttg agaagaaccc ttaactaaac ttgcagacga atgtcggcat
      721 agcgtgagct attaagccga ccattcgaca agttttggga ttgttaaggg ttccgaggct
      781 caacgtcaat aaagcaattg gaataaagca cctatgatta tttaaaaata taagttataa
      841 tacattcaaa aatatttttg aatgaggtgt attatgattc aaacggttgt tgctgctgct
      901 gttctttata ttgctacagc agttgattta ttagtaattt tattaatatt ttttgctaga
      961 gcaaagacta gaaaagaata tagagatatt tatgttggtc aatatttagg gtctattatt
     1021 ttaatattag ttagtttgtt tttagctttt gtattaaatt atgttccaga aaagtggata
     1081 ttaggtttat tgggtttaat accaatttat cttggaatta aagtggctat ttatgatgat
     1141 tgtgaaggag aaaagagagc taaaaaagaa ttgaatgaaa aaggattgtc taaattagtt
     1201 ggtacggttg caattgttac gatagcaagt tgtggcgccg ataatattgg tttatttgtt
     1261 ccgtattttg tgacattaag tgttactaat ttattactta ctctgtttgt ctttttaatt
     1321 ttaattttct tcttggtgtt tactgcacaa aaattagcta atatcccagg aattggagaa
     1381 attgttgaga aatttagtcg ttggattatg gctatcattt atatagcttt aggtttattt
     1441 attattattg aaaatgacac tattcaaaca attttaggat ttatatttta atttagggtg
     1501 tgattttata tgagttatga aaatacttgt gatgtgatct gtgtacatga ggataaagtt
     1561 aacaatgctt taagtttttt agaagatgat aaatctaaga aattacttaa cattttagaa
     1621 aaaatttgtg atgagaagaa attgaaaatc atattatctt tgattaaaga agatgagttg
     1681 tgtgtttgtg atatttcttt gatattgaaa atgagtgttg cttcaacttc acatcattta
     1741 aggcttttat ataaaaatga ggtacttgat ttttataaag atggaaagat ggcatattat
     1801 tttattaaag acgatgaaat aagagagttt ttctctaaaa atcatgaggg tttttgaaac
     1861 gagtgaaacg agtttcttct tgtcttgata ctatatagaa ataactcgat tttatatata
     1921 cagctgtaac tgttgatatt acagcgttta aacgtgtttt tgtgcgtgaa aggaaaattt
     1981 gacaataaaa aaccccagtt atattattaa ggtgtcgaat cttaaataat actgggggtc
     2041 tttttatatg caatataata ctactagaag tataaccgaa aatcaagata ataaaacgtt
     2101 aaaagatatg acgaaaagtg ggaaacaacg cccatggaga gaaaagaaaa tagataatgt
     2161 aagctatgca gatatactag aaattttaaa aatcaaaaag gcttttaatg taaaacaatg
     2221 tggtaatatt ttagaattta agccaactga tgaaggttat ttgaagttac ataagacatg
     2281 gttttgtaaa tcaaaattat gtccggtttg taattggaga cgtgctatga aaaatagtta
     2341 tcaagctcaa aaagtgattg aagaagtaat taaggaaaag ccaaaagcac gttggttgtt
     2401 tttaacactt tcaacaaaaa atgcgataga tggagatact ttagaacaaa gtttgaagca
     2461 tctaactaaa gcatttgata ggttgagtag atataaaaag gttaaacaaa atcttgttgg
     2521 atttatgcgt tcaacagaag ttaccgttaa taaaaatgac ggtagttata atcagcatat
     2581 gcacgttttg ttatgtgttg aaaatgcata ttttagaaaa aaagagaatt atataactca
     2641 agaagaatgg gttaatttat ggcaaagagc attgcaagtt gattatcgac ctgttgctaa
     2701 tattaaagcg atcaaaccaa ataaaaaagg cgataaagat attgaatctg caatcaaaga
     2761 gacctcaaaa tattcggtta aatcatctga ttttttaact gatgatgatg aaaaaaatca
     2821 agaaattgta agtgatttag aaaaaggttt gtatcgaaag cgtatgttaa gttatggtgg
     2881 attgctgaaa caaaagcata aaattttaaa cttagacgat gctgaagatg gaaatttgat
     2941 taatacaagt gatgaagata aaacaacaga tgaagaagaa aaggcacatt cgattacggc
     3001 aatttggaat tttgaaaagc aaaattatta tttaaggcat tagtgataac tgatgtcttt
     3061 ttttattact tttttgtaaa aaagtgctgt cttatttttg tgacaaattc tgtatgtagt
     3121 gtcacaaaac tgtgacaaac gcaatatatt gtgtcacaaa agtgtgacat ttcgtctttt
     3181 tatgccccca tgcaaaaaga tcgacgaagt cttgaaatat ctggctttgc cagatacctc
     3241 atctatagat ggggtcatat tttccttatg ctcttacgga gttcttagag aaaaattgaa
     3301 atttctcgat ttttgataaa aacgccctgc ag
//
