LOCUS       NC_021927               2096 bp    DNA     circular CON 30-JAN-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Enteritidis plasmid pJ,
            complete sequence.
ACCESSION   NC_021927
VERSION     NC_021927.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14225946
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Enteritidis (Salmonella
            enteritidis)
  ORGANISM  Salmonella enterica subsp. enterica serovar Enteritidis
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2096)
  AUTHORS   Shubin,F.N., Rakov,A.V. and Kuznetsova,N.A.
  TITLE     Transcontinental prevalence in Eurasia plasmid pJ of Salmonella
            enteritidis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2096)
  AUTHORS   Shubin,F.N., Rakov,A.V. and Kuznetsova,N.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-APR-2013) Molecular Epidemiology, Federal State Budget
            Establishment 'Scientific Research Institute of Epidemiology and
            Microbiology' Siberian Branch of Russian Academy of Medical
            Sciences, 1 Selskaya Street, Vladivostok, Primorye 690087, Russian
            Federation
COMMENT     ##Assembly-Data-START##
            Assembly Method              :: Vector NTI v. 11.5.0
            Sequencing Technology        :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Date              :: 01/30/2024 05:06:25
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.6
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 1
            CDSs (total)                 :: 1
            Genes (coding)               :: 1
            CDSs (with protein)          :: 1
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            KC886366.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2096
                     /organism="Salmonella enterica subsp. enterica serovar
                     Enteritidis"
                     /mol_type="genomic DNA"
                     /strain="S1744"
                     /serovar="Enteritidis"
                     /sub_species="enterica"
                     /db_xref="taxon:149539"
                     /plasmid="pJ"
                     /geo_loc_name="Russia"
                     /serogroup="D1"
     gene            88..1077
                     /locus_tag="HTA74_RS00005"
                     /old_locus_tag="D645_p15001"
     CDS             88..1077
                     /locus_tag="HTA74_RS00005"
                     /old_locus_tag="D645_p15001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001362017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_024136759.1"
                     /translation="MKNPDLQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MALCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDARWMFLTLTVRNCAIGELGEMLNRMNAAFQRMKVRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVRHERWVELWRECLRVDYDPNVDVRAVKPRKPKGG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPEWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVRKYRRSPTKDKTESG"
                     /name="protein rep"
     Typing          1080..1161
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="93.976"
                     /coverage="90.0"
                     /evalue="3.4000000000000004e-27"
     Typing          complement(804..995)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.964"
                     /coverage="100.0"
                     /evalue="6.14e-93"
ORIGIN
        1 ttcgaattgg tgatacgact aacacaacag gtgatatggc aatgataaca cgtcagatga
       61 gccatcgccc actatcgggt ggtgcgcatg aaaaaccctg atctccagaa cctcacggac
      121 tattccccct cagatgcgcc ctgggacgct cacagaagcg tttctgatga cgtgggaggg
      181 atttacctgc ttgcagccga atatgagcgc tacggggcgc gtatggccct ctgtggtggt
      241 ttactgcgtt tcgggtggtc taccctcaag gaaaccggag aaacgcgtct gaggctgcgt
      301 gaggcgcatt tctgccgtgt ccggcattgt cctgtctgcc agtggaggcg ctccctgatg
      361 tggcaagccc gtttctacca gtccctgccg cgtatcgtgg cggattatcc cgatgcccgc
      421 tggatgttcc tgactctgac cgtgcgcaac tgtgcgatcg gggagctggg cgagatgctg
      481 aaccggatga atgcagcttt tcagcgcatg aaggttcgca aggagttccg gcctgtgcag
      541 ggctggatac gtaccacgga agtcacccgc gggagcgacg gcagcgcaca cccgcacttc
      601 cacaccctga tgatggtgcc gcctggcatg ctaaatggga aaagttacgt caggcatgaa
      661 cgctgggttg aactctggcg ggagtgtctg cgggtcgatt atgacccgaa tgttgatgtc
      721 cgggcagtga aacctcgtaa gccgaagggc ggcgaatcgc tggcctgcgc gaccgccgaa
      781 ctggtgcgcg gtgcggtggc cgaaaccctg aaatattcca cgaagccggc tgacatggtg
      841 gccgatcctg aatggttcct cgaactgacc cgccagacgc acaagcgccg ctttgtggcg
      901 accggcggcg cactcaaaga cgtgctgaaa ctcgatcagg aaactgacgc cgacatggtg
      961 atcggtgatg atatttccga gggcgacgat gacggttcac gaatcgcgtt cgagtggaaa
     1021 accgaggtca gaaagtaccg tcgctcaccg acgaaagata aaactgaatc aggctagcgg
     1081 ggtgtcgggg tgcacccctg accagatggc aattgtgata gcgtcgcgtg tgacggtatt
     1141 acaattacac atcctgtccc gaaaattccc gccgtttctc ggttttttga gcgtcgcaga
     1201 ccgcacgaca aacgaaccta aggtgagttt gtataagtgc gcacttcgtg agattccctg
     1261 actgccagtt tgtcgattgc gcggaacggc tgcggcacga aaacggcaaa atgatttact
     1321 cgccgtttgt gtgggttgtt ttgtggggtg tcaatggggt tgtggtcttt tttgtgggtt
     1381 aaagtgtggg tgattgtgtg ggctgtgtgt tttgagttgt gggtgattat gtgggtcatt
     1441 gtgtgggctg tatgcacggc atttttttgt tctcctaaaa cacaggcacg ataagcggcg
     1501 tacacaaaac ggggcgtttc gctccgtcgc ttgtgccaaa ggggacaccc ctttgcaacc
     1561 ctgtgcggtt ctacgaacct ggtcaggact gcgccccgac accccgccaa cgcctcacgg
     1621 aacgcgaaaa aattccgcgt accgttcacc gttccctgat tcgtcaaaca gaaaatcgcg
     1681 ggggcccgcg cctccggcgt gggttccgat tttgtgattg acgacggcac gggaaaaaca
     1741 ctggggatgg tggttggtgt cacgcagtga ggccaaccac ctgcaagacg gttttttttg
     1801 ttgttcacaa aatcggggtg aaagtctgtg gatgagatgg gtgtaagtgg gtggggttgg
     1861 gtgttttggg ttactgaaaa tcccgctcaa aattcaagcg aatctcgcgc gcgatccttg
     1921 tatttatact taagggataa ctctaggatt caaattcgcc tccagccctt gtgccgcaag
     1981 gcctgaaggg ggatttgtcg gaaaatggtt ttggagttat tctgtcggga gtggtcgcat
     2041 taaaagcgac ccccgcaacg agggcaatcg ttcgggggtg tgaccacctg taggaa
//
