LOCUS       NC_019143               2367 bp    DNA     circular CON 11-SEP-2023
DEFINITION  Staphylococcus aureus plasmid p9b, complete sequence.
ACCESSION   NC_019143
VERSION     NC_019143.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14226101
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 2367)
  AUTHORS   de Vries,L.E., Christensen,H. and Agersoe,Y.
  TITLE     Structural alterations conferring constitutive expression of diverse
            erm(C) depend on the gene sequence that is linked to replicon types
            in staphylococci plasmids
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2367)
  AUTHORS   de Vries,L.E., Christensen,H. and Agersoe,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2011) National Food Institute, Trchnical
            University of Copenhagen, DTU, Kemitorvet, Building 204 st, Kgs.
            Lyngby 2800, Denmark
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Date              :: 09/11/2023 03:07:20
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.6
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 2
            CDSs (total)                 :: 2
            Genes (coding)               :: 2
            CDSs (with protein)          :: 2
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            JF968542.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2367
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="9b"
                     /host="pig"
                     /db_xref="taxon:1280"
                     /plasmid="p9b"
                     /geo_loc_name="Denmark"
     gene            43..777
                     /gene="erm(C)"
                     /locus_tag="HS835_RS00005"
                     /old_locus_tag="D646_p4001"
     ARG             44..774
                     /name="erm(C)"
                     /gene="erm(C)"
                     /gene_name="23S rRNA (adenine(2058)-N(6))-methyltransferase
                     Erm(C)"
                     /tool="amrfinderplus"
                     /drug_class="LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN"
                     /identity="100.0"
                     /coverage="100.0"
     gene            1226..1702
                     /locus_tag="HS835_RS00010"
                     /old_locus_tag="D646_p4002"
     CDS             1226..1702
                     /locus_tag="HS835_RS00010"
                     /old_locus_tag="D646_p4002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000664727.1"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA];
                     GO:0006276 - plasmid maintenance [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="WP_000664727.1"
                     /translation="MKERYGTVYKGSQRLIDEESGEVIEVDKLYRKQTSGNFVKAYIVQ
                     LISMLDMIGGKKLKIVNYILDNVHLSNNTMIATTREIAKATGTSLQTVITTLKILEEGN
                     IIKRKTGVLMLNPELLMRGDDQKQKYLLLEFGNFEQEANEKQENALSDYYSFKD"
                     /name="replication/maintenance protein RepL"
     ARG             44..777
                     /name="ErmC"
                     /gene="ErmC"
                     /gene_name="Erm 23S ribosomal RNA methyltransferase"
                     /tool="rgi"
                     /drug_class="macrolide antibiotic; lincosamide antibiotic;
                     streptogramin antibiotic; streptogramin A antibiotic;
                     streptogramin B antibiotic"
                     /identity="99.59"
                     /coverage="100.0"
     Typing          1227..1712
                     /name="rep_cluster_1947"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.591"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ttatactaat tttataagga ggaaaaaata aagagggtta taatgaacga gaaaaatata
       61 aaacacagtc aaaactttat tacttcaaaa cataatatag ataaaataat gacaaatata
      121 agattaaatg aacatgataa tatctttgaa atcggctcag gaaaagggca ttttaccctt
      181 gaattagtac agaggtgtaa tttcgtaact gccattgaaa tagaccataa attatgcaaa
      241 actacagaaa ataaacttgt tgatcacgat aatttccaag ttttaaacaa ggatatattg
      301 cagtttaaat ttcctaaaaa ccaatcctat aaaatatttg gtaatatacc ttataacata
      361 agtacggata taatacgcaa aattgttttt gatagtatag ctgatgagat ttatttaatc
      421 gtggaatacg ggtttgctaa aagattatta aatacaaaac gctcattggc attattttta
      481 atggcagaag ttgatatttc tatattaagt atggttccaa gagaatattt tcatcctaaa
      541 cctaaagtga atagctcact tatcagatta aatagaaaaa aatcaagaat atcacacaaa
      601 gataaacaga agtataatta tttcgttatg aaatgggtta acaaagaata caagaaaata
      661 tttacaaaaa atcaatttaa caattcctta aaacatgcag gaattgacga tttaaacaat
      721 attagctttg aacaattctt atctcttttc aatagctata aattatttaa taagtaagtt
      781 aagggatgca taaactgcat cccttaactt gtttttcgtg tacctatttt ttgtgaatcg
      841 attatgtctt ttgcgcattc acttcttttc tatataaata tgagcgaagc gaataagcgt
      901 cggaaaagca gcaaaaagtt tcctttttgc tgttggagca tgggggttca gggggtgcag
      961 tatctgacgt caatgccgag cgaaagcgag ccgaagggta gcatttacgt tagataaccc
     1021 ccctgatatg ctccgacgct ttatatagaa aagaagattc aactaggtaa aatcttaata
     1081 taggttgaga tgataaggtt tataaggaat ttgtttgttc taatttttca ctcattttgt
     1141 tctaatttct tttaacaaat gttctttttt ttttagaaca gttatgatat agttagaata
     1201 gtttaaaata aggagtgaga aaaagatgaa agaaagatat ggaacagtct ataaaggctc
     1261 tcagaggctc atagacgaag aaagtggaga agtcatagag gtagacaagt tataccgtaa
     1321 acaaacgtct ggtaacttcg taaaggcata tatagtgcaa ttaataagta tgttagatat
     1381 gattggcgga aaaaaactta aaatcgttaa ctatatccta gataatgtcc acttaagtaa
     1441 caatacaatg atagctacaa caagagaaat agcaaaagct acaggaacaa gtctacaaac
     1501 agtaataaca acacttaaaa tcttagaaga aggaaatatt ataaaaagaa aaactggagt
     1561 attaatgtta aaccctgaac tactaatgag aggcgacgac caaaaacaaa aatacctctt
     1621 actcgaattt gggaactttg agcaagaggc aaatgaaaaa caagaaaatg cattatctga
     1681 ttattattct ttcaaggact agtataacat aaaatcgtct acaaatagac aaaaaacctg
     1741 cacgcttaat gtagatcaaa agcttaacgc aaatgaaata gattgacctc ccaataacac
     1801 cacgtagtta ttgggaggtc aatctatgaa atgcgattaa gctttttcta attcacataa
     1861 gcgtgcaggt ttaaagtaca taaaaaatat aatgaaaaaa agcatcatta tactaacgtt
     1921 ataccaacat tatactctca ttatactaat tgcttattcc aatttcctat tggttggaac
     1981 caacaggcgt tagtgtgttg ttgagttggt actttcatgg gattaatccc atgaaacccc
     2041 caaccaactc gccaaagctt tggctaacac acacgccatt ccaaccaata gttttctcgg
     2101 cataaagcca tgctctgacg cttaaatgca ctaatgcctt aaaaaaacat taaagtctaa
     2161 cacactagac ttatttactt cgtaattaag tcgttaaacc gtgtgctcta cgaccaaaag
     2221 tataaaacct ttaagaactt tcttttttct tgtaaaaaaa gaaactagat aaatctctca
     2281 tatcttttat tcaataatcg catcagattg cagtataaat ttaacgatca ctcatcatgt
     2341 tcatatttat cagagctcgt gctataa
//
