LOCUS       NC_019140               2908 bp    DNA     circular CON 08-FEB-2024
DEFINITION  Staphylococcus aureus plasmid pDLK2, complete sequence.
ACCESSION   NC_019140
VERSION     NC_019140.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14225545
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 2908)
  AUTHORS   Kuntova,L., Pantucek,R., Rajova,J., Ruzickova,V., Petras,P.,
            Maslanova,I. and Doskar,J.
  TITLE     Characteristics and distribution of plasmids in a clonally diverse
            set of methicillin-resistant Staphylococcus aureus strains
  JOURNAL   Arch Microbiol 194 (7), 607-614 (2012)
   PUBMED   22331232
REFERENCE   2  (bases 1 to 2908)
  AUTHORS   Kuntova,L., Kahankova,J., Pantucek,R., Ruzickova,V., Petras,P.,
            Nepejchalova,I. and Doskar,J.
  TITLE     Characteristics and diversity of resistance plasmids in hospital-
            and community-acquired methicillin-resistant Staphylococcus aureus
            strains in the Czech Republic
  JOURNAL   Unpublished
REFERENCE   3  (bases 1 to 2908)
  AUTHORS   Kuntova,L. and Doskar,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-JAN-2010) Department of Experimental Biology, Masaryk
            University, Kotlarska 2, Brno 61137, Czech Republic
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/08/2024 02:24:44
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2
            CDSs (total)                      :: 2
            Genes (coding)                    :: 1
            CDSs (with protein)               :: 1
            Genes (RNA)                       :: 0
            tRNAs                             :: 0
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 1
            CDSs (without protein)            :: 1
            Pseudo Genes (ambiguous residues) :: 0 of 1
            Pseudo Genes (frameshifted)       :: 1 of 1
            Pseudo Genes (incomplete)         :: 0 of 1
            Pseudo Genes (internal stop)      :: 0 of 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            GU562625.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2908
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="EP5"
                     /isolation_source="clinical isolate"
                     /db_xref="taxon:1280"
                     /plasmid="pDLK2"
                     /note="methicillin-resistant strain"
     gene            complement(399..1322)
                     /locus_tag="HS632_RS00005"
                     /old_locus_tag="D646_p1001"
     CDS             complement(399..1322)
                     /locus_tag="HS632_RS00005"
                     /old_locus_tag="D646_p1001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002499696.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_000417606.1"
                     /translation="MEKYTEKKQRNQVFQKFIKRHIGENQMDLVEDCNTFLSFVADKTL
                     EKQKLYKANSCKNRFCPVCAWRKARKDALGLSLMMQYIKQQEKKEFIFLTLTTPNVMSD
                     ELENEIKRYNNSFRKLIKRKKVGSVIKGYVRKLEITYNKKRDDYNPHFHVLIAVNKSYF
                     TDKRYYISQQEWLDLWRDVTGISEITQVQVQKIRQNNNKELYEMAKYSGKDSDYLINQK
                     VFDAFYKSLKGKQVLVYSGLFKEAKKKLKNGDLDYLKEIDPTEYIYQIFYIWKQKEYLA
                     SELYDLTEQEKREINHKMIDEIEEEQ"
                     /name="protein rep"
     gene            1792..2511
                     /gene="catA"
                     /locus_tag="HS632_RS00010"
                     /old_locus_tag="D646_p1002"
                     /pseudo=""
     ARG             1793..2439
                     /name="catA"
                     /gene="catA"
                     /gene_name="type A-9 chloramphenicol O-acetyltransferase"
                     /tool="amrfinderplus"
                     /drug_class="PHENICOL"
                     /identity="100.0"
                     /coverage="100.0"
     ARG             1793..2442
                     /name="Streptococcus suis chloramphenicol
                     acetyltransferase"
                     /gene="Streptococcus suis chloramphenicol
                     acetyltransferase"
                     /gene_name="chloramphenicol acetyltransferase (CAT)"
                     /tool="rgi"
                     /drug_class="phenicol antibiotic"
                     /identity="94.91"
                     /coverage="100.0"
     Typing          complement(400..1334)
                     /name="rep_cluster_1230"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 aggggcattt taaagattta ggggtaaatc atatagtttt atgcctaaaa acctacagaa
       61 gcttttaaaa agcaaatatg agccaaataa atatattcta attctacaaa caaaaatttg
      121 agcaaattca gtgtcgattt tttaagacac tgcccagtta catgcaaatt aaaattttca
      181 tgatttttta tagttcctaa cagggttaaa atttgtataa cgaaagtata atgtttatat
      241 aacgttagta taataaagca ttttaacatt atacttttga taatcgttta tcgtcgtcat
      301 cacaataact tttaaaatac tcgtgcataa ttcaacagct gacctcccaa taactacatg
      361 gtgttatcgg gaggtcagct gttagcactt atattttgtt attgttcttc ctcgatttcg
      421 tctatcattt tgtgattaat ttctcttttt tcttgttctg ttaagtcata aagttcacta
      481 gctaaatact ctttttgttt ccaaatataa aaaatttgat agatatattc ggttggatca
      541 atttctttta agtaatctaa atccccattt tttaatttct ttttagcctc tttaaataat
      601 cctgaataaa ctaatacctg tttaccttta agtgatttat aaaatgcatc aaagactttt
      661 tgatttatta aataatcact atctttacca gaatacttag ccatttcata taattcttta
      721 ttattatttt gtcttatttt ttgaacttga acttgtgtta tttctgaaat gcccgttaca
      781 tcacgccata aatctaacca ttcttgttgg ctaatataat atcttttatc tgtgaaatac
      841 gatttattta ctgcaattaa cacatgaaaa tgaggattat aatcatctct ttttttatta
      901 tatgtaatct ctaacttacg aacatatccc tttataacac tacctacttt ttttctcttt
      961 ataagttttc taaaagaatt attataacgt tttatttcat tttctaattc atcactcatt
     1021 acattaggtg tagtcaaagt taaaaagata aactcctttt tctcttgctg cttaatatat
     1081 tgcatcatca aagataaacc caatgcatct tttctagctt ttctccaagc acagacagga
     1141 caaaatcgat ttttacaaga attagcttta tataatttct gtttttctaa agttttatca
     1201 gctacaaaag acagaaatgt attgcaatct tcaactaaat ccatttgatt ctctccaata
     1261 tgacgtttaa taaatttctg aaatacttga tttctttgtt ttttctcagt atacttttcc
     1321 atgttataac acataaaaac aacttagttt tcacaaacta tgacaataaa aaaagttgct
     1381 ttttcccctt tctatgtatg ttttttacta gtcatttaaa acgatacatt aataggtacg
     1441 aaaaagcaac tttttttgcg cttaaaacca gtcataccaa taacttaagg gtaactagcc
     1501 tcgccggcaa tagttaccct tattatcaag ataagaaaga aaaggatttt tcgctacgct
     1561 caaatccttt aaaaaaacac aaaagaccac attttttaat gtggtctttt attcttcaac
     1621 taaagcaccc attagttcaa caaacgaaaa ttggataaag tgggatattt ttaaaatata
     1681 tatttatgtt acagtaatat tgacttttaa aaaaggattg attctaatga agaaagcaga
     1741 caagtaagcc tcctaaattc actttagata aaaatttagg aggcatatca aatgaacttt
     1801 aataaaattg atttagacaa ttggaagaga aaagagatat ttaatcatta tttgaaccaa
     1861 caaacgactt ttagtataac cacagaaatt gatattagtg ttttataccg aaacataaaa
     1921 caagaaggat ataaatttta ccctgcattt attttcttag tgacaagggt gataaactca
     1981 aatacagctt ttagaactgg ttacaatagc gacggagagt taggttattg ggataagtta
     2041 gagccacttt atacaatttt tgatggtgta tctaaaacat tctctggtat ttggactcct
     2101 gtaaagaatg acttcaaaga gttttatgat ttataccttt ctgatgtaga gaaatataat
     2161 ggttcgggga aattgtttcc caaaacacct atacctgaaa atgctttttc tctttctatt
     2221 attccatgga cttcatttac tgggtttaac ttaaatatca ataataatag taattacctt
     2281 ctacccatta ttacagcagg aaaattcatt aataaaggta attcaatata tttaccgcta
     2341 tctttacagg tacatcattc tgtttgtgat ggttatcatg caggattgtt tatgaactct
     2401 attcaggaat tgtcagatag gcctaatgac tggcttttat aatatgagat aatgccgact
     2461 gtacttttta cagtcggttt tctaatgtca ctaacctgcc ccgttagttg aagaaggttt
     2521 ttatattaca gctccagatc catatccttc tttttctgaa ccgacttctc ctttttcgct
     2581 tctttattcc aattgcttta ttgacgttga gcctcggaac ccttaacaat cccaaaactt
     2641 gtcgaatggt cggcttaata gctcacgcta tgccgacatt cgtctgcaag tttagttaag
     2701 ggttcttctc aacgcacaat aaattttctc ggcataaatg cgtggtctaa tttttatttt
     2761 taataacctt gatagcaaaa aatgccattc caatacaaaa ccacatacct ataatcgata
     2821 accacataac agtcataaaa ccactccttt ttaacaaact ttatcacaag aaatatttaa
     2881 attttaaatg cctttatttt gaatttta
//
