LOCUS       NC_019139               2402 bp    DNA     circular CON 03-JAN-2024
DEFINITION  Staphylococcus aureus plasmid pDLK1, complete sequence.
ACCESSION   NC_019139
VERSION     NC_019139.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14225546
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 2402)
  AUTHORS   Kuntova,L., Pantucek,R., Rajova,J., Ruzickova,V., Petras,P.,
            Maslanova,I. and Doskar,J.
  TITLE     Characteristics and distribution of plasmids in a clonally diverse
            set of methicillin-resistant Staphylococcus aureus strains
  JOURNAL   Arch Microbiol 194 (7), 607-614 (2012)
   PUBMED   22331232
REFERENCE   2  (bases 1 to 2402)
  AUTHORS   Kuntova,L., Kahankova,J., Pantucek,R., Ruzickova,V., Petras,P.,
            Nepejchalova,I. and Doskar,J.
  TITLE     Characteristics and diversity of resistance plasmids in hospital-
            and community-acquired methicillin-resistant Staphylococcus aureus
            strains in the Czech Republic
  JOURNAL   Unpublished
REFERENCE   3  (bases 1 to 2402)
  AUTHORS   Kuntova,L. and Doskar,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-JAN-2010) Department of Experimental Biology, Masaryk
            University, Kotlarska 2, Brno 61137, Czech Republic
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Date              :: 01/03/2024 06:26:15
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.6
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 2
            CDSs (total)                 :: 2
            Genes (coding)               :: 2
            CDSs (with protein)          :: 2
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            GU562624.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2402
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="E14"
                     /isolation_source="clinical isolate"
                     /db_xref="taxon:1280"
                     /plasmid="pDLK1"
                     /note="methicillin-resistant strain"
     gene            complement(28..504)
                     /locus_tag="HS633_RS00005"
                     /old_locus_tag="D646_p1"
     CDS             complement(28..504)
                     /locus_tag="HS633_RS00005"
                     /old_locus_tag="D646_p1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000664727.1"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA];
                     GO:0006276 - plasmid maintenance [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="WP_000664727.1"
                     /translation="MKERYGTVYKGSQRLIDEESGEVIEVDKLYRKQTSGNFVKAYIVQ
                     LISMLDMIGGKKLKIVNYILDNVHLSNNTMIATTREIAKATGTSLQTVITTLKILEEGN
                     IIKRKTGVLMLNPELLMRGDDQKQKYLLLEFGNFEQEANEKQENALSDYYSFKD"
                     /name="replication/maintenance protein RepL"
     gene            complement(952..1686)
                     /gene="erm(C)"
                     /locus_tag="HS633_RS00010"
                     /old_locus_tag="D646_p2"
     ARG             complement(956..1686)
                     /name="erm(C)"
                     /gene="erm(C)"
                     /gene_name="23S rRNA (adenine(2058)-N(6))-methyltransferase
                     Erm(C)"
                     /tool="amrfinderplus"
                     /drug_class="LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN"
                     /identity="100.0"
                     /coverage="100.0"
     ARG             complement(953..1686)
                     /name="ErmC"
                     /gene="ErmC"
                     /gene_name="Erm 23S ribosomal RNA methyltransferase"
                     /tool="rgi"
                     /drug_class="macrolide antibiotic; lincosamide antibiotic;
                     streptogramin antibiotic; streptogramin A antibiotic;
                     streptogramin B antibiotic"
                     /identity="99.59"
                     /coverage="100.0"
     Typing          complement(19..504)
                     /name="rep_cluster_1947"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.591"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 tctatttgta gacgatttta tgttatacta gtccttgaaa gaataataat cagataatgc
       61 attttcttgt ttttcatttg cctcttgctc aaagttccca aattcgagta agaggtattt
      121 ttgtttttgg tcgtcgcctc tcattagtag ttcagggttt aacattaata ctccagtttt
      181 tctttttata atatttcctt cttctaagat tttaagtgtt gttattactg tttgtagact
      241 tgttcctgta gcttttgcta tttctcttgt tgtagctatc attgtattgt tacttaagtg
      301 gacattatct aggatatagt taacgatttt aagttttttt ccgccaatca tatctaacat
      361 acttattaat tgcactatat atgcctttac gaagttacca gacgtttgtt tacggtataa
      421 cttgtctacc tctatgactt ctccactttc ttcgtctatg agcctctgag agcctttata
      481 gactgttcca tatctttctt tcatcttttt ctcactcctt attttaaact attctaacta
      541 tatcataact gttctaaaaa aaaaagaaca tttgttaaaa gaaattagaa caaaatgagt
      601 gaaaaattag aacaaacaaa ttccttataa accttatcat ctcaacctat attaagattt
      661 tacctagttg aatcttcttt tctatataaa gcgtcggagc atatcagggg gttatctaac
      721 gtaaatgcta cccttcggct cgctttcgct cggcattgac gtcagatact gcaccccctg
      781 aacccccatg ctccaacagc aaaaaggaaa ctttttgctg cttttccgac gcttattcgc
      841 ttcgctcata tttatataga aaagaagtga atgcgcaaaa gacataatcg attcacaaaa
      901 aataggtaca cgaaaaacaa gttaagggat gcataaactg catcccttaa cttacttatt
      961 aaataattta tagctattga aaagagataa gaattgttca aagctaatat tgtttaaatc
     1021 gtcaattcct gcatgtttta aggaattgtt aaattgattt tttgtaaata ttttcttgta
     1081 ttctttgtta acccatttca taacgaaata attatacttc tgtttatctt tgtgtgatat
     1141 tcttgatttt tttctattta atctgataag tgagctattc actttaggtt taggatgaaa
     1201 atattctctt ggaaccatac ttaatataga aatatcaact tctgccatta aaaataatgc
     1261 caatgagcgt tttgtattta ataatctttt agcaaacccg tattccacga ttaaataaat
     1321 ctcatcagct atactatcaa aaacaatttt gcgtattata tccgtactta tgttataagg
     1381 tatattacca aatattttat aggattggtt tttaggaaat ttaaactgca atatatcctt
     1441 gtttaaaact tggaaattat cgtgatcaac aagtttattt tctgtagttt tgcataattt
     1501 atggtctatt tcaatggcag ttacgaaatt acacctctgt actaattcaa gggtaaaatg
     1561 cccttttcct gagccgattt caaagatatt atcatgttca tttaatctta tatttgtcat
     1621 tattttatct atattatgtt ttgaagtaat aaagttttga ctgtgtttta tatttttctc
     1681 gttcattata accctcttta atttggttat aatgaatttt gcttattaac gattcattat
     1741 aaccacttaa taaaattagt ataattatag cacgagctct gataaatatg aacatgatga
     1801 gtgatcgtta aatttatact gcaatctgat gcgattattg aataaaagat atgagagatt
     1861 tatctagttt ctttttttac aagaaaaaag aaagttctta aaggttttat acttttggtc
     1921 gtagagcaca cggtttaacg acttaattac gaagtaaata agtctagtgt gttagacttt
     1981 aatgtttttt taaggcatta gtgcatttaa gcgtcagagc atggctttat gccgagaaaa
     2041 ctattggttg gaatggcgtg tgtgttagcc aaagctttgg cgagttggtt gggggtttca
     2101 tgggattaat cccatgaaag taccaactca acaacacact aacgcctgtt ggttccaacc
     2161 aataggaaat tggaataagc aattagtata atgagagtat aatgttggta taacgttagt
     2221 ataatgatgc tttttttcat tatatttttt atgtacttta aacctgcacg cttatgtgaa
     2281 ttagaaaaag cttaatcgca tttcatagat tgacctccca ataactacgt ggtgttattg
     2341 ggaggtcaat ctatttcatt tgcgttaagc ttttgatcta cattaagcgt gcaggttttt
     2401 tg
//
