LOCUS       NC_019134               4060 bp    DNA     circular CON 14-MAR-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Derby plasmid pSD4.0,
            complete sequence.
ACCESSION   NC_019134
VERSION     NC_019134.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14225867
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Derby
  ORGANISM  Salmonella enterica subsp. enterica serovar Derby
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4060)
  AUTHORS   Bleicher,A., Schofl,G., Rodicio Mdel,R. and Saluz,H.P.
  TITLE     The plasmidome of a Salmonella enterica serovar Derby isolated from
            pork meat
  JOURNAL   Plasmid 69 (3), 202-210 (2013)
   PUBMED   23333216
REFERENCE   2  (bases 1 to 4060)
  AUTHORS   Bleicher,A. and Schofl,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-AUG-2012) Cell and Molecular Biology, Leibniz
            Institute for Natural Product Research and Infection Biology,
            Beutenbergstrasse 11a, Jena, Thuringia D-07745, Germany
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Name              :: GCF_009960245.1-RS_2024_03_14
            Annotation Date              :: 03/14/2024 02:57:23
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.7
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 3
            CDSs (total)                 :: 3
            Genes (coding)               :: 3
            CDSs (with protein)          :: 3
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            JX566767.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4060
                     /organism="Salmonella enterica subsp. enterica serovar
                     Derby"
                     /mol_type="genomic DNA"
                     /serovar="Derby"
                     /sub_species="enterica"
                     /db_xref="taxon:28144"
                     /plasmid="pSD4.0"
     gene            1..702
                     /locus_tag="HTA43_RS00005"
                     /old_locus_tag="pSD40_001"
     CDS             1..702
                     /locus_tag="HTA43_RS00005"
                     /old_locus_tag="pSD40_001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001281399.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_015059933.1"
                     /translation="MSDLIAYKSNALVEASYKLTLQEQRFLLLCIGRLKSGADAESPKL
                     QKTMTITAAEYFDSFPDMGRKNAEVQLQEAIDRLWDRSIILKDDEKREEFRWIQYRAQY
                     AKGEARAQITFSDAVMPYLTQLQGQFTRVVIKNISRLSRSYSIRIYELLQQFRSTGERI
                     IALDDFRSMLDIEHKYQTYKSLNQQLLRPCIDELNKKSDLVVTVETIKKGRTVVALHFR
                     FKEDKQIKMTI"
                     /name="replication initiation protein"
     gene            complement(948..3095)
                     /gene="mobQ"
                     /locus_tag="HTA43_RS00010"
                     /old_locus_tag="pSD40_002"
     CDS             complement(948..3095)
                     /gene="mobQ"
                     /locus_tag="HTA43_RS00010"
                     /old_locus_tag="pSD40_002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016240513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobQ family relaxase"
                     /protein_id="WP_015059934.1"
                     /translation="MAIYHLSMKIISRNSGYSAVASAAYRSGSLMLDERTGLTHDYTRK
                     SGVAEAVILTPATAPAWCTNRAELWNAVEKAERRKNSQLAREIELAIPHELPQDAARET
                     VLAFVRENFVSQGMIADVAFHHMDKTNPHAHIMLTTRAVGPAGFGGKVRDWNDRTHAET
                     WRASWADHANRALANAGYQEEIDHRSYERQGLEKTPGIHLGKSACAMETRGIETERGEQ
                     NRLINRLNLEIQISRTELRNGGLTEPARRVADLLNIGLPDNATSYTLRDIIEALPKDSN
                     SAWKLTSNAMSMMADMQATRRRWEELNTERKVAMSHAASLKKSSPFSSGFSRIPLMQWA
                     APEYRSEQGKIQSLSQQMEKLRQHYRKVEKQDIPASQMAFEKQWQKWGESGLAALRAQL
                     LKREEELRRKEQEDTERSRAEQLRKNDNAVMDSGVLSAVVTGYGEAPMPGNGEMTCYLL
                     LHNRNGEYTLWGNELEKYRARIFERVDLMRDRSGYICDRSEIGQRPPLQRVYSSATFEQ
                     LLTQVCQTWPQHTRNLRQPKTWPESFCLGEDRQPAMPSLAARKVDFTQGRLPPTLMPVM
                     SSVDRETRQLQLLLVMGVDDSLGGVVRLNGTLYPAFAVPSADNSQLVISALTDKGLRYA
                     GYGVAVNHDADSHISPAPELMQFHLKTREAPLFAAVNTPEKQPDHLFRSLGFNRTWDEW
                     RREEDARTHATVRRHDRGWSQ"
                     /name="mobQ"
     gene            3274..3528
                     /gene="mobC"
                     /locus_tag="HTA43_RS00015"
                     /old_locus_tag="pSD40_003"
     CDS             3274..3528
                     /gene="mobC"
                     /locus_tag="HTA43_RS00015"
                     /old_locus_tag="pSD40_003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000091747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase accessory protein MobC"
                     /protein_id="WP_000091744.1"
                     /translation="MSRTLEQKIADAEARLQRLKAKSRSLDTAQKVIVGAALLAKVRKP
                     EEVQLRAWLLQFLKAEVTRQADVTRILPLINELEALPEQ"
                     /name="mobC"
     Typing          complement(2738..3096)
                     /name="MOBQ"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="99.444"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          3097..3273
                     /name="MOBQ"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="5.61e-88"
     Typing          2..701
                     /name="rep_cluster_1778"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.429"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          complement(952..3182)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="97.326"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 atgtcggatc taattgccta taaatctaat gcgctggttg aagccagtta taaattgacc
       61 ctacaggaac agcgattttt gttactttgc atcggtcgat tgaagtctgg ggctgatgca
      121 gaatctccaa aattgcaaaa gacaatgacc attacagctg cggaatattt cgattcattc
      181 cctgacatgg ggcggaaaaa tgccgaggtt cagttacagg aagcaattga tcgtttgtgg
      241 gacaggtcaa tcattctcaa ggatgacgag aaacgtgagg agttccgctg gatccagtat
      301 cgggcacagt acgctaaagg cgaggccaga gcacaaataa cattttctga cgcagtaatg
      361 ccttatttga cacaactaca agggcaattt actagagttg taatcaagaa tatatctaga
      421 ttatcaagaa gttacagtat aaggatatac gaactcctcc agcagttccg cagtactggc
      481 gaacgtatta tcgctctcga tgattttcgc tcaatgcttg atatagagca taaatatcaa
      541 acatataaat cacttaacca gcaattatta agaccctgca ttgacgaact gaacaaaaaa
      601 agcgatctgg ttgtaacggt tgagacgatc aaaaaggggc gcacggttgt agccctgcat
      661 tttcgcttca aggaagacaa acagatcaag atgacgatct agaatcgatt ttaaggcctc
      721 taaaacgttc tctggtgcgt ttttttggtg tcaggtatgc gatggtactg ctttggcaat
      781 aaattgcgtc agaattgatt tgagaggcca aaaaggaacc cccaattttg ggggcggaaa
      841 aacaaaacta tgtttgcgtt atgtgagtgt gcttcttgca ttcatccctg tcgatgaaca
      901 tcggcgaaca taacacgatg ttacacaaaa caaaatattg ttcacattca ctgtgaccaa
      961 ccgcgatcat gtctcctcac ggtggcgtgt gttcgtgcat cttcctcgcg ccgccattcg
     1021 tcccaggtac gattaaaacc cagcgagcgg aacagatgat ccggctgttt ttctggtgtg
     1081 ttgacggcag caaaaagcgg tgcctcacgg gttttcagat gaaactgcat cagttctggt
     1141 gcaggtgata tgtggctgtc tgcatcgtga tttacggcaa caccataccc tgcataccgt
     1201 aaccccttat cggtcagtgc actgatgacc agctggctgt tatcggctga gggaacggca
     1261 aacgcgggat acagcgtacc attaagccgg acaacaccgc ccagagagtc atccacgccc
     1321 atgaccagca aaagctgaag ttgtcgggtt tcccggtcta cagaactcat taccggcatc
     1381 agcgtcggtg gcagacgtcc ctgcgtaaaa tccaccttcc ttgctgccag tgatggcatg
     1441 gctggctggc ggtcttctcc aagacagaaa gactccggcc atgtcttcgg ctggcggaga
     1501 ttgcgggtat gttgcggcca tgtctggcaa acctgcgtca gcagttgctc aaaggtcgca
     1561 gaggaataaa cacgttgcag tggcggacgt tggccgattt cgcttcggtc acagatataa
     1621 ccactcctgt cacgcattaa atcaacacgc tcaaagattc tggcgcggta tttctccagt
     1681 tcgttccccc agagcgtata ttctccgttc cggttgtgaa gcagaaggta acaggtcatt
     1741 tccccgttac caggcatggg ggcctcgcca taccccgtaa cgactgcgct cagtacccct
     1801 gaatccataa cggcattgtc atttttcctg agctgctccg cgcgactacg ttcagtatct
     1861 tcctgttcct tccggcgcaa ttcctcttca cgtttaagca actgggctct gagagctgca
     1921 aggccggatt ccccccactt ctgccactgt ttttcaaatg ccatctgact cgcgggaatg
     1981 tcctgtttct ccaccttccg gtaatgctgt cgcaattttt ccatttgctg gctcagagac
     2041 tggatttttc cctgctcact acggtattcc ggtgccgccc attgcatcag gggaatacgg
     2101 gaaaaaccgg acgaaaacgg cgatgatttt ttcaggctgg cagcatggct catcgctacc
     2161 tttcgttcgg tgttcagctc ttcccagcgt ctgcgcgtcg cctgcatatc tgccatcatc
     2221 gacatggcat tactggtgag tttccatgcc gagttactgt ccttcggcaa cgcttcgatg
     2281 atgtcacgta gtgtgtacga agttgcgttg tcaggaagcc cgatattcag aaggtcagcc
     2341 acacggcggg caggctctgt cagccctccg ttcctgagtt cggtgcggga aatctgtatt
     2401 tccaggttaa gcctgttaat cagacgattc tgttcgccgc gttctgtttc gataccgcgt
     2461 gtttccatcg cacaggcaga ctttccgagg tgaataccag gcgttttctc aagcccctgt
     2521 cgctcgtatg aacgatggtc tatctcttcc tgataaccgg cgttcgccag tgccctgttt
     2581 gcatggtcag cccatgatgc ccgccacgtc tcggcatgtg tccggtcgtt ccagtccctg
     2641 acctttccac cgaatccagc aggtccgaca gctctcgtgg tcagcatgat gtgcgcatgg
     2701 ggatttgttt tatccatgtg atggaacgcc acatcagcaa tcatgccctg actgacaaag
     2761 ttttctctga caaaggcgag aacggtttcc cgtgcggcat cctgcggcag ttcgtggggg
     2821 atggcgagtt caatttcccg cgcaagttgt gagttcttcc ggcgttcggc cttctcaacg
     2881 gcattccaga gttcggcacg gttcgtacac caggcagggg ctgtcgcggg agtcagaatc
     2941 acagcttcag ccacaccgct tttgcgggtg tagtcgtgag tcagtccggt acgctcatca
     3001 agcatcagtg aaccggaacg ataggcagca gaagcaacgg cgctgtagcc gctgtttctg
     3061 gagatgattt tcatgctgag atgataaatc gccatttctg ccgtaatgcc tttttgtggt
     3121 tttctttcag ccccgcaggg cgcacacaat cgaaacggag tggagattgt ataagtgcgc
     3181 acttcgtgat ttgccgtgca ttatgccagc tcagttttta aactaccagt gacgcgctaa
     3241 aatgcgattt ttcatcgcgc acggagttac atcatgagca gaacactcga acagaagatt
     3301 gctgatgctg aggccagatt acagcgcctg aaggcgaaga gcaggagtct ggacacagcg
     3361 cagaaggtca ttgtgggtgc agcattgctg gcaaaggtca gaaagccgga ggaggtgcag
     3421 ttgcgtgcct ggttactcca gttcctgaag gcagaggtga cacgacaggc tgatgtgacg
     3481 cgcatactgc cgctgattaa cgagctggaa gcgctgccag aacagtgatt gtatcgtccg
     3541 ctcgccgcag tcccagcgac cgagcgttag cgagcgagtg ggcgaggaag cggaagtgaa
     3601 tccgtcgcct gattgagcac atacgcacgg tttttcggga ggtgatatgc gctgaacccg
     3661 catgaatact ggatttccac agggttggag ggggtgtatt cggaacttgc aattctgctt
     3721 ttttgcaacg cattgttttt attggttttt tgttttcagc actccaagtt atccacaggc
     3781 tcgtcgttaa gtttttagat cttgttttta agatcttgtt tttaatactt gttttagtgc
     3841 caaaattcct tatagaaaac aaaatgttac aacgctatag gtaatatgat ttaaggtaaa
     3901 ggtaatatga tttaaggtgt ttaggtaata tgatttaagg taaaggtaat atgatttaag
     3961 gtaatattca cagaaaaagg gatattaaaa taaaaaggca ttgcctttcg ctgggggtat
     4021 gtttatcttt tattcattac cttttgggga gggatgctct
//
