LOCUS       NC_019103               2750 bp    DNA     circular CON 03-JAN-2024
DEFINITION  Salmonella enterica subsp. enterica serovar 6,7:d:- plasmid pMK101,
            complete sequence.
ACCESSION   NC_019103
VERSION     NC_019103.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14225580
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar 6,7:d:-
  ORGANISM  Salmonella enterica subsp. enterica serovar 6,7:d:-
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2750)
  AUTHORS   Karczmarczyk,M., Martins,M., McCusker,M., Mattar,S., Amaral,L.,
            Leonard,N., Aarestrup,F.M. and Fanning,S.
  TITLE     Characterization of antimicrobial resistance in Salmonella enterica
            food and animal isolates from Colombia: identification of a
            qnrB19-mediated quinolone resistance marker in two novel serovars
  JOURNAL   FEMS Microbiol Lett 313 (1), 10-19 (2010)
   PUBMED   20883500
REFERENCE   2  (bases 1 to 2750)
  AUTHORS   Karczmarczyk,M., Martins,M.S., McCusker,M.M., Mattar,S., Amaral,L.,
            Leonard,N., Aarestrup,F.M. and Fanning,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-APR-2010) Centres for Food Safety & Food-borne
            Zoonomics, University College Dublin, Belfield, Dublin, Dublin 4,
            Ireland
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/03/2024 06:19:15
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3
            CDSs (total)                      :: 3
            Genes (coding)                    :: 2
            CDSs (with protein)               :: 2
            Genes (RNA)                       :: 0
            tRNAs                             :: 0
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 1
            CDSs (without protein)            :: 1
            Pseudo Genes (ambiguous residues) :: 0 of 1
            Pseudo Genes (frameshifted)       :: 0 of 1
            Pseudo Genes (incomplete)         :: 1 of 1
            Pseudo Genes (internal stop)      :: 0 of 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            HM070380.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2750
                     /organism="Salmonella enterica subsp. enterica serovar
                     6,7:d:-"
                     /mol_type="genomic DNA"
                     /strain="S75"
                     /serovar="6,7:d:-"
                     /isolation_source="ground meat"
                     /sub_species="enterica"
                     /db_xref="taxon:794865"
                     /plasmid="pMK101"
                     /geo_loc_name="Colombia"
     gene            37..681
                     /locus_tag="HS673_RS00005"
                     /old_locus_tag="D645_p5001"
     CDS             37..681
                     /locus_tag="HS673_RS00005"
                     /old_locus_tag="D645_p5001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017900990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolone resistance pentapeptide repeat protein
                     QnrB19"
                     /protein_id="WP_012954666.1"
                     /translation="MTLALVGEKIDRNRFTGEKVENSTFFNCDFSGADLSGTEFIGCQF
                     YDRESQKGCNFSRAMLKDAIFKSCDLSMADFRNVSALGIEIRHCRAQGADFRGASFMNM
                     ITTRTWFCSAYITNTNLSYANFSKVVLEKCELWENRWMGTQVLGATFSGSDLSGGEFST
                     FDWRAANFTHCDLTNSELGDLDIRGVDLQGVKLDSYQASLLMERLGIAVIG"
                     /name="quinolone resistance pentapeptide repeat protein
                     QnrB19"
     gene            complement(1234..1470)
                     /locus_tag="HS673_RS00010"
                     /old_locus_tag="D645_p5002"
     CDS             complement(1234..1470)
                     /locus_tag="HS673_RS00010"
                     /old_locus_tag="D645_p5002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001676031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_012772745.1"
                     /translation="MARLTNLTPAEKKFLDDAVAAAERASGKKLNQPNRHIVLNRARAQ
                     IELQRYADRQRALREDERQQSDFAWSRPRAPRR"
                     /name="hypothetical protein"
     gene            <2538..2693
                     /locus_tag="HS673_RS00015"
                     /old_locus_tag="D645_p5004"
                     /pseudo=""
     CDS             <2538..2693
                     /locus_tag="HS673_RS00015"
                     /old_locus_tag="D645_p5004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707212.3"
                     /GO_function="GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /name="helix-turn-helix domain-containing protein"
     ARG             38..678
                     /name="qnrB19"
                     /gene="qnrB19"
                     /gene_name="quinolone resistance pentapeptide repeat
                     protein QnrB19"
                     /tool="amrfinderplus"
                     /drug_class="QUINOLONE"
                     /identity="100.0"
                     /coverage="100.0"
     Typing          complement(1636..1809)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.5600000000000002e-86"
     Typing          1788..2279
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.51"
                     /coverage="81.0"
                     /evalue="0.0"
ORIGIN
        1 atggcgtcat tactgtataa aaacacaggc atagatatga ctctggcatt agttggcgaa
       61 aaaattgaca gaaatcgctt caccggtgag aaagttgaaa atagtacatt ttttaactgc
      121 gatttttcag gtgccgacct gagcggcact gaatttatcg gctgccagtt ctatgatcgc
      181 gaaagtcaga aagggtgcaa ttttagtcgc gcaatgctga aagatgccat tttcaaaagc
      241 tgtgatttat caatggcaga tttccgcaac gtcagtgcct tgggcattga aattcgccac
      301 tgccgcgcac aaggcgcaga tttccgcggt gcaagcttta tgaatatgat caccacgcgc
      361 acctggtttt gcagcgcata tatcactaat actaatctaa gctacgccaa tttttcgaaa
      421 gtcgtgttgg aaaagtgtga gctgtgggaa aaccgctgga tggggactca ggtactgggt
      481 gcgacgttca gtggttcaga tctctccggc ggcgagtttt cgactttcga ctggcgagca
      541 gcaaacttca cacattgcga tctgaccaat tcggagttag gtgacttaga tattcggggt
      601 gttgatttac aaggcgttaa gttagacagc taccaggcat cgttgctcat ggagcggctt
      661 ggcatcgctg tgattggtta gttcagcgtt tacaccggga gatgcgtttg acgatttact
      721 tttaaccagt acgactcctg gcaagcattg tgaaacgttt tctccagtgg acgaatatcc
      781 tgacctaccg catcaacgac atgccatcta atgctgcatt ctggacagga atttgatgaa
      841 tatctaacca attcattttc gcgagaacaa cgaataacca ctcccgaatc atgaacccgc
      901 gatcatcgcg tttattgagt ttattattta tctatgcgat tccgatgaaa aattcgcacg
      961 aaaatatggc taactcatag caaaaaaaaa gccccctaag ggcttttttt tgtacctgac
     1021 ggtcagaccg attaaacata acatcccttg cccgcacccc cgcaggcgcc ctcagcgcaa
     1081 tcctgctgca tcagggccgt ttccagcacc tttcctcacc agtatcccgg aaaaacgccc
     1141 ctgatgattt ctgcgcgact gcatggctat gcacgcaggt gaatggcagg tgatttcgca
     1201 gcgtcagcac cactaaaccg ccaaaagcca aaatcagcgg cgcggcgcgc gcggacgtga
     1261 ccaggcaaaa tcggactgct gccgctcatc ctcacgtaat gcacgctggc ggtcggcgta
     1321 acgctgcaac tcaatttgcg cacgcgctct gttcaggacg atgtgccggt taggctgatt
     1381 tagcttttta cctgacgctc tttcagctgc ggcaacagca tcatcaagaa attttttctc
     1441 tgcaggcgtc aagtttgtca gtctggccat aacgttctcc agtcagaata aatcagcaca
     1501 gtctgccaga cacagtagaa acgatgaagc gccagcgacg gtgaaaggca gtcagaaacg
     1561 gtgaacggga gcggatttta atccggtgcc gtgaggcgtt ggacaagccg caggcgcgtc
     1621 attagctttt agccggtttc ggggcgcagc cctgaaccag tcacgtagcg ctagcggagt
     1681 gtatactggc tgactatgtt ggcacggatg tggaaatcag tgaagtgctt catgtagcag
     1741 gagaaaaaag gcggcaccag cgcgtcagca ggatatgtag tacaggatat attccgcttc
     1801 ctcgctcact gactcgctgc gctcggtcgt tcggctgcgg cgagcggtgc cggcttacag
     1861 gcggggcgga aatttcctgg gagataccag gaaggagctt aacagggaag agataaggcc
     1921 gcggcgaagc cgtttttcca taggctccgc ccccctgaca aacatcatga aatctgacgc
     1981 tcaaatcagt ggtggcgaaa cccgatgcgg cttaaagata ccaggcgttt ccccctggtg
     2041 gctccctcgt gctcccccgc attcctgcct ttcggtttac cggtgtcatt ccgctgttat
     2101 ggccgcgttt atctcattcc acgcctgaca ctcagttccg cgaaggcagt tcgctcctgg
     2161 atggactgta tgcacgaacc ccccgttcag tccgactgct gcgccttatc cggtaactat
     2221 catcttgagt ccaacccgga aagacacgac ttatcgccac tggcagcagc cactggtaac
     2281 tgatttagag gagttagtct tgaagttatg cgcctgttaa ggctaaactg aaagaacaga
     2341 tttggttact gcgctcctcg taagccagtt accacggttc aaagagttgc tgctctgaga
     2401 accttcgaaa aaccgccttg cagggcggtt ttttcgttta cagagcaaga gattacgacg
     2461 ccacagaaag gatctcaaga agatccttca ccgtaatgga aatctatcca atccgagcac
     2521 ataggataca catcgttata acgctggatc tgcgtgaatt ccagcagcag caagagaaag
     2581 actttctaca aaccagctta cagcaggcta aatttaacca gaaaaaagcc gctgaattac
     2641 tgggtctgac ttatcatcag ctacgtgcct tgctgaagaa acaccagatc taatacgcat
     2701 ttgcaggtgt catactggcg ggtttgacgc ataacgtcat aaggtttacc
//
