LOCUS       NC_019101               2699 bp    DNA     circular CON 03-MAY-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Infantis plasmid pPAB19,
            complete sequence.
ACCESSION   NC_019101
VERSION     NC_019101.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14225388
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Infantis
  ORGANISM  Salmonella enterica subsp. enterica serovar Infantis
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2699)
  AUTHORS   Tran,T., Andres,P., Petroni,A., Soler-Bistue,A., Albornoz,E.,
            Zorreguieta,A., Reyes-Lamothe,R., Sherratt,D.J., Corso,A. and
            Tolmasky,M.E.
  TITLE     Small plasmids harboring qnrB19: a model for plasmid evolution
            mediated by site-specific recombination at oriT and Xer sites
  JOURNAL   Antimicrob Agents Chemother 56 (4), 1821-1827 (2012)
   PUBMED   22290975
REFERENCE   2  (bases 1 to 2699)
  AUTHORS   Andres,P., Soler Bistue,A., Zorreguieta,A., Tolmasky,M., Corso,A.
            and Petroni,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JUL-2009) Servicio Antimicrobianos, Instituto Nacional
            de Enfermedades Infecciosas - ANLIS 'Dr. Carlos G. Malbran', Av.
            Velez Sarsfield 563, Buenos Aires C1282AFF, Argentina
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009953925.2-RS_2024_05_03
            Annotation Date                   :: 05/03/2024 03:44:56
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3
            CDSs (total)                      :: 3
            Genes (coding)                    :: 2
            CDSs (with protein)               :: 2
            Genes (RNA)                       :: 0
            tRNAs                             :: 0
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 1
            CDSs (without protein)            :: 1
            Pseudo Genes (ambiguous residues) :: 0 of 1
            Pseudo Genes (frameshifted)       :: 0 of 1
            Pseudo Genes (incomplete)         :: 1 of 1
            Pseudo Genes (internal stop)      :: 0 of 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            GQ412195.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2699
                     /organism="Salmonella enterica subsp. enterica serovar
                     Infantis"
                     /mol_type="genomic DNA"
                     /strain="M7849"
                     /serovar="Infantis"
                     /sub_species="enterica"
                     /db_xref="taxon:595"
                     /plasmid="pPAB19"
     gene            join(2614..2699,1..151)
                     /locus_tag="HS604_RS00005"
     CDS             join(2614..2699,1..151)
                     /locus_tag="HS604_RS00005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001676031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_012772745.1"
                     /translation="MARLTNLTPAEKKFLDDAVAAAERASGKKLNQPNRHIVLNRARAQ
                     IELQRYADRQRALREDERQQSDFAWSRPRAPRR"
                     /name="hypothetical protein"
     gene            complement(653..1297)
                     /locus_tag="HS604_RS00010"
                     /old_locus_tag="D645_p3001"
     CDS             complement(653..1297)
                     /locus_tag="HS604_RS00010"
                     /old_locus_tag="D645_p3001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017900990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolone resistance pentapeptide repeat protein
                     QnrB19"
                     /protein_id="WP_012954666.1"
                     /translation="MTLALVGEKIDRNRFTGEKVENSTFFNCDFSGADLSGTEFIGCQF
                     YDRESQKGCNFSRAMLKDAIFKSCDLSMADFRNVSALGIEIRHCRAQGADFRGASFMNM
                     ITTRTWFCSAYITNTNLSYANFSKVVLEKCELWENRWMGTQVLGATFSGSDLSGGEFST
                     FDWRAANFTHCDLTNSELGDLDIRGVDLQGVKLDSYQASLLMERLGIAVIG"
                     /name="quinolone resistance pentapeptide repeat protein
                     QnrB19"
     gene            complement(1391..>1546)
                     /locus_tag="HS604_RS00015"
                     /pseudo=""
     CDS             complement(1391..>1546)
                     /locus_tag="HS604_RS00015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309907.2"
                     /GO_function="GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /name="helix-turn-helix domain-containing protein"
     ARG             complement(657..1297)
                     /name="qnrB19"
                     /gene="qnrB19"
                     /gene_name="quinolone resistance pentapeptide repeat
                     protein QnrB19"
                     /tool="amrfinderplus"
                     /drug_class="QUINOLONE"
                     /identity="100.0"
                     /coverage="100.0"
     Typing          2276..2449
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.5600000000000002e-86"
     Typing          complement(1806..2297)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.51"
                     /coverage="81.0"
                     /evalue="0.0"
ORIGIN
        1 gctaaatcag cctaaccggc acatcgtcct gaacagagcg cgtgcgcaaa ttgagttgca
       61 gcgttacgcc gaccgccagc gtgcattacg tgaggatgag cggcagcagt ccgattttgc
      121 ctggtcacgt ccgcgcgcgc cgcgccgctg attttggctt ttggcggttt agtggtgctg
      181 acgctgcgaa atcacctgcc attcacctgc gtgcatagcc atgcagtcgc gcagaaatca
      241 tcaggggcgt ttttccggga tactggtgag gaaaggtgct ggaaacggcc ctgatgcagc
      301 aggattgcgc tgagggcgcc tgcgggggtg cgggcaaggg atgttatgtt taatcggtct
      361 gaccgtcagg tacaaaaaaa agcccttagg gggctttttt tttgctatga gttagccata
      421 ttttcgttaa gacatggctt catgattcgg gagtggttat tcgttgttct cgcgaaaatg
      481 aattggttag atattcatca aattcctgtc cagaatgcag cattagatgg catgtcgttg
      541 atgcggtagg tcaggatatt cgtccactgg agaaaacgtt tcacaatgct tgccaggagt
      601 cgtactggtt aaaagtaaat cgtcaaacgc atctcccggt gtaaacgctg aactaaccaa
      661 tcacagcgat gccaagccgc tccatgagca acgatgcctg gtagctgtct aacttaacgc
      721 cttgtaaatc aacaccccga atatctaagt cacctaactc cgaattggtc agatcgcaat
      781 gtgtgaagtt tgctgctcgc cagtcgaaag tcgaaaactc gccgccggag agatctgaac
      841 cactgaacgt cgcacccagt acctgagtcc ccatccagcg gttttcccac agctcacact
      901 tttccaacac gactttcgaa aaattggcgt agcttagatt agtattagtg atatatgcgc
      961 tgcaaaacca ggtgcgcgtg gtgatcatat tcataaagct tgcaccgcgg aaatctgcgc
     1021 cttgtgcgcg gcagtggcga atttcaatgc ccaaggcact gacgttgcgg aaatctgcca
     1081 ttgataaatc acagcttttg aaaatggcat ctttcagcat tgcgcgacta aaattgcacc
     1141 ctttctgact ttcgcgatca tagaactggc agccgataaa ttcagtgccg ctcaggtcgg
     1201 cacctgaaaa atcgcagtta aaaaatgtac tattttcaac tttctcaccg gtgaagcgat
     1261 ttctgtcaat tttttcgcca actaatgcca gagtcatatc tatgcctgtg tttttataca
     1321 gtaatgacgc catggtaaac cttatgacgt tatgcgtcaa acccgccagt atgacacctg
     1381 caaatgcgta ttagatctgg tgtttcttca gcaaggcacg tagctgatga taagtcagac
     1441 ccagtaattc agcggctttt ttctggttaa atttagcctg ctgtaagctg gtttgtagaa
     1501 agtctttctc ttgctgctgc tggaattcac gcagatccag cgttataacg atgtgtatcc
     1561 tatgtgctcg gattggatag atttccatta cggtgaagga tcttcttgag atcctttctg
     1621 tggcgtcgta atctcttgct ctgtaaacga aaaaaccgcc ctgcaaggcg gtttttcgaa
     1681 ggttctcaga gcagcaactc tttgaaccgt ggtaactggc ttacgaggag cgcagtaacc
     1741 aaatctgttc tttcagttta gccttaacag gcgcataact tcaagactaa ctcctctaaa
     1801 tcagttacca gtggctgctg ccagtggcga taagtcgtgt ctttccgggt tggactcaag
     1861 atgatagtta ccggataagg cgcagcagtc ggactgaacg gggggttcgt gcatacagtc
     1921 catccaggag cgaactgcct tcgcggaact gagtgtcagg cgtggaatga gataaacgcg
     1981 gccataacag cggaatgaca ccggtaaacc gaaaggcagg aatgcggggg agcacgaggg
     2041 agccaccagg gggaaacgcc tggtatcttt aagccgcatc gggtttcgcc accactgatt
     2101 tgagcgtcag atttcatgat gtttgtcagg ggggcggagc ctatggaaaa acggcttcgc
     2161 cgcggcctta tctcttccct gttaagctcc ttcctggtat ctcccaggaa atttccgccc
     2221 cgcctgtaag ccggcaccgc tcgccgcagc cgaacgaccg agcgcagcga gtcagtgagc
     2281 gaggaagcgg aatatatcct gtactacata tcctgctgac gcgctggtgc cgcctttttt
     2341 ctcctgctac atgaagcact tcactgattt ccacatccgt gccaacatag tcagccagta
     2401 tacactccgc tagcgctacg tgactggttc agggctgcgc cccgaaaccg gctaaaagct
     2461 aatgacgcgc ctgcggcttg tccaacgcct cacggcaccg gattaaaatc cgctcccgtt
     2521 caccgtttct gactgccttt caccgtcgct ggcgcttcat cgtttctact gtgtctggca
     2581 gactgtgctg atttattctg actggagaac gttatggcca gactgacaaa cttgacgcct
     2641 gcagagaaaa aatttcttga tgatgctgtt gccgcagctg aaagagcgtc aggtaaaaa
//
