LOCUS       NC_019040               6222 bp    DNA     circular CON 24-JUN-2024
DEFINITION  Escherichia coli ETEC 1392/75 plasmid p62, complete sequence.
ACCESSION   NC_019040
VERSION     NC_019040.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14229444
KEYWORDS    RefSeq.
SOURCE      Escherichia coli ETEC 1392/75
  ORGANISM  Escherichia coli ETEC 1392/75
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1
  AUTHORS   Crossman,L.C., Chaudhuri,R.R., Beatson,S.A., Wells,T.J., Desvaux,M.,
            Cunningham,A.F., Petty,N.K., Mahon,V., Brinkley,C., Hobman,J.L.,
            Savarino,S.J., Turner,S.M., Pallen,M.J., Penn,C.W., Parkhill,J.,
            Turner,A.K., Johnson,T.J., Thomson,N.R., Smith,S.G. and
            Henderson,I.R.
  TITLE     A commensal gone bad: complete genome sequence of the prototypical
            enterotoxigenic Escherichia coli strain H10407
  JOURNAL   J Bacteriol 192 (21), 5822-5831 (2010)
   PUBMED   20802035
REFERENCE   2  (bases 1 to 6222)
  AUTHORS   Aslett,M.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-APR-2010) Aslett M.A., Pathogen Sequencing Unit,
            Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus,
            Hinxton, Cambridge, Cambridgeshire CB10 1SA, UNITED KINGDOM
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009953395.2-RS_2024_06_24
            Annotation Date                   :: 06/24/2024 03:03:54
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 8
            CDSs (total)                      :: 8
            Genes (coding)                    :: 7
            CDSs (with protein)               :: 7
            Genes (RNA)                       :: 0
            tRNAs                             :: 0
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 1
            CDSs (without protein)            :: 1
            Pseudo Genes (ambiguous residues) :: 0 of 1
            Pseudo Genes (frameshifted)       :: 0 of 1
            Pseudo Genes (incomplete)         :: 1 of 1
            Pseudo Genes (internal stop)      :: 0 of 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            FN822747.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..6222
                     /organism="Escherichia coli ETEC 1392/75"
                     /mol_type="genomic DNA"
                     /strain="ETEC 1392/75"
                     /db_xref="taxon:762608"
                     /plasmid="p62"
     gene            49..489
                     /locus_tag="HXF75_RS00005"
                     /old_locus_tag="ETEC1392/75_p62_00001"
     CDS             49..489
                     /locus_tag="HXF75_RS00005"
                     /old_locus_tag="ETEC1392/75_p62_00001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011161230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_005119689.1"
                     /translation="MAWHTVQETLKLTGKSRSQLYRDMAKGLVSYRTGKNDRREFETSE
                     LIRAYGELRTSETPKRHKEGHSKSVVSQAENAQLDVIQQKLDALQQTVTLMLEDKMARE
                     AENRLRNEEREQLQAEISRLADALAQEKKRGFWSRLFRSGSE"
                     /name="hypothetical protein"
     gene            complement(1256..1405)
                     /locus_tag="HXF75_RS00010"
     CDS             complement(1256..1405)
                     /locus_tag="HXF75_RS00010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017880354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001138880.1"
                     /translation="MPSEYDEQLDSTDTQLPGEYDLFDLMAQVTEENLHAPVDFGSPVG
                     REAL"
                     /name="hypothetical protein"
     gene            1976..2134
                     /locus_tag="HXF75_RS00040"
     CDS             1976..2134
                     /locus_tag="HXF75_RS00040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007772075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_032287700.1"
                     /translation="MHEPPVQSDRCALSGNYQLESNPERHDKTPLAAAISNRSAREDRL
                     RGLEVEA"
                     /name="hypothetical protein"
     gene            2594..3409
                     /gene="sul2"
                     /locus_tag="HXF75_RS00015"
                     /old_locus_tag="ETEC1392/75_p62_00009"
     ARG             2595..3406
                     /name="sul2"
                     /gene="sul2"
                     /gene_name="sulfonamide-resistant dihydropteroate synthase
                     Sul2"
                     /tool="amrfinderplus"
                     /drug_class="SULFONAMIDE"
                     /identity="100.0"
                     /coverage="100.0"
     gene            3470..4273
                     /gene="aph(3'')-Ib"
                     /locus_tag="HXF75_RS00020"
                     /old_locus_tag="ETEC1392/75_p62_00010"
     ARG             3471..4270
                     /name="aph(3'')-Ib"
                     /gene="aph(3'')-Ib"
                     /gene_name="aminoglycoside O-phosphotransferase
                     APH(3'')-Ib"
                     /tool="amrfinderplus"
                     /drug_class="AMINOGLYCOSIDE"
                     /identity="100.0"
                     /coverage="100.0"
     gene            4273..5109
                     /locus_tag="HXF75_RS00025"
                     /old_locus_tag="ETEC1392/75_p62_00011"
     CDS             4273..5109
                     /locus_tag="HXF75_RS00025"
                     /old_locus_tag="ETEC1392/75_p62_00011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000480972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside O-phosphotransferase APH(6)-Id"
                     /protein_id="WP_000480968.1"
                     /translation="MFMPPVFPAHWHVSQPVLIADTFSSLVWKVSLPDGTPAIVKGLKP
                     IEDIADELRGADYLVWRNGRGAVRLLGRENNLMLLEYAGERMLSHIVAEHGDYQATEIA
                     AELMAKLYAASEEPLPSALLPIRDRFAALFQRARDDQNAGCQTDYVHAAIIADQMMSNA
                     SELRGLHGDLHHENIMFSSRGWLVIDPVGLVGEVGFGAANMFYDPADRDDLCLDPRRIA
                     QMADAFSRALDVDPRRLLDQAYAYGCLSAAWNADGEEEQRDLAIAAAIKQVRQTSY"
                     /name="aminoglycoside O-phosphotransferase APH(6)-Id"
     gene            complement(<5216..5620)
                     /locus_tag="HXF75_RS00030"
                     /old_locus_tag="ETEC1392/75_p62_00012"
                     /pseudo=""
     CDS             complement(<5216..5620)
                     /locus_tag="HXF75_RS00030"
                     /old_locus_tag="ETEC1392/75_p62_00012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001120888.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="IS91 family transposase"
                     /name="IS91 family transposase"
     gene            complement(5664..6086)
                     /locus_tag="HXF75_RS00035"
                     /old_locus_tag="ETEC1392/75_p62_00013"
     CDS             complement(5664..6086)
                     /locus_tag="HXF75_RS00035"
                     /old_locus_tag="ETEC1392/75_p62_00013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000102614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_172684459.1"
                     /translation="MLFLKVKEDNFMSTELNSGTVGGFGHMGPNDPYNDGHSGSGSSGG
                     SFNGGGNGGHDNSSGSSYTASFGLITGRHPITVPGTKNINSVDLSAVINNIIHHEGARN
                     NMYLDTANNVRVGVTGTGWQCLATAGISAEGKRTFR"
                     /name="hypothetical protein"
     ARG             4274..5106
                     /name="aph(6)-Id"
                     /gene="aph(6)-Id"
                     /gene_name="aminoglycoside O-phosphotransferase APH(6)-Id"
                     /tool="amrfinderplus"
                     /drug_class="AMINOGLYCOSIDE"
                     /identity="100.0"
                     /coverage="100.0"
     Typing          complement(1441..1614)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="99.429"
                     /coverage="100.0"
                     /evalue="1.19e-84"
     Typing          1538..2143
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="89.593"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 atgttctgct gttacaatac ggtacacaca ggagacactg tcacttttat ggcatggcac
       61 acagttcaag agacactgaa attaacagga aagtcgcgct cgcaattata tcgtgacatg
      121 gctaaaggcc ttgtcagcta tcgcacagga aaaaatgatc gccgggagtt cgagaccagt
      181 gaactgattc gggcctatgg cgagctgcgc acttctgaga caccaaaaag gcacaaggag
      241 ggacactcca aatctgtcgt tagccaggcg gaaaatgctc agctagacgt cattcagcag
      301 aaactggacg ctctgcagca gactgttacc ctaatgcttg aagacaagat ggcgcgggaa
      361 gcagaaaacc gcctgcgaaa tgaggagagg gaacaactac aggccgaaat tagccgtctg
      421 gctgacgcgc tggcacagga aaaaaagcgg ggattctggt cgcggctgtt tcgctccggt
      481 tcagagtaac agtgcaggtg actctgattt accataacat ctgttatcag caccgcctga
      541 gaggccctca gggcgtttct gacgggaaac cggtaaaaca ggcaacaaac cacccgaaaa
      601 cccgccagaa acgcgcaggc tctgttttta cggcatgcat gagtatgcgc acaagtgcat
      661 agcgcggaaa ttcacaccat tcagccgggg taagtcctgt ttccggcgtt cttcccatcc
      721 gaaaacggtg aacggggacg caatttattg cgtggccgtg aagcgttgcc ggcgcagccg
      781 gaaaacccgc tgtcagcacg ttcaggaagg gggtgatgta caaatggcac agaggatgaa
      841 agtgacgtat gagctgaagg aatgatgtaa aagtgatgta taagtgatgt aaaagtgatg
      901 tataagtgat gtaaaagtga tgtatgaaca gaaggagcga tgtaattctg tagtcaggaa
      961 gaataacccg ttcatgcagg catgaacgat acagtgagga acgctttttt tgtcacgatc
     1021 tccccttaac ctgcgtaaat cacccgccat ggttgattat ttttcaacct caaaatggtc
     1081 atacacctaa cgcagccgcg attttcatcg caactgcatg aattaaaaga aaaaaaagga
     1141 atatttcgtt ttcacgagta atacccgggt attaaaaatc cactgtaatt acatgaaaat
     1201 aaagaaataa aaggtaatac cggagtatta ccacgtacgc gggcaagcga aaaagctata
     1261 acgcttcccg gccgacaggc gacccaaaat ccacaggggc atgcaggttc tcttcagtaa
     1321 cctgcgccat taaatcaaaa aggtcatatt cgccgggaag ctgcgtatca gtcgaatcca
     1381 gttgttcatc atattcagat ggcatggggt gatatccagt agctgagagg ttgttagcgg
     1441 gtttcggggc gcagccctga accagtcatg tagcgctagc ggagtgtata ctggcttact
     1501 atgttgccac gattgcgaaa atcagtgaag tgcttcatgt ggcaggagaa aaaaggcagc
     1561 accggcgcgt cagcagaata tgcgatacag gagatattcc gcttcctcgc tcactgactc
     1621 gctacgctcg gtcgttcggc tgcggcgagc ggtaccggct tacggacggg gacggaaatt
     1681 tcctggaaga taccaggaag acacttagca aagaagagat aaggccacgg cgaagccgtt
     1741 tttccatagg ctccgccccc ctgacaagca tcgcaaaatc tgacgctcaa atcagtggtg
     1801 gcgaaacccg acaggactat aaagatccca ggcgtttccc cctggtagct ccctcgtgcg
     1861 ctctcctgtt cctgcctttc ggtttaccgg tgtcattccg ctgttatggc cgcggtttct
     1921 cattccacgc ctgacactca gttccgtgaa ggcagttcgc tccaagctgg actgtatgca
     1981 cgaacccccc gttcagtccg accgctgcgc cttgtccggt aactatcaac ttgagtccaa
     2041 cccggaaaga cacgacaaaa cgccactggc agcagccatt agtaacagga gtgcacgaga
     2101 agatagatta agaggtcttg aagtagaggc ctgactgcgg ctacactgaa agaacagttt
     2161 tggtaatggc ggtctcgtga accctgttac cgggttaagc agttccccaa ctgacttaac
     2221 cttcgaacaa accgcctccc caggcggttt tttcgtttac agagcaagag attacgattc
     2281 attgaaaagg atctcaagaa gatcctttgt agattactat caattaatct tccgaacatg
     2341 acaccagtca ctgttgatta cggttaaacc gctccgtaac aggtttccct cgtattggtg
     2401 acttgcagca ccaaagaagc aaaaaagata aatatatcta cttattgaga gatgatatat
     2461 ttatttccaa aatgctacag atacatcatc atgaaacgga tcaccgcaaa caggttactc
     2521 gcctggggat tccctttcga cccgagcatc cgtatgagac tcatgctcga ttattattat
     2581 tatagaagcc cccatgaata aatcgctcat cattttcggc atcgtcaaca taacctcgga
     2641 cagtttctcc gatggaggcc ggtatctggc gccagacgca gccattgcgc aggcgcgtaa
     2701 gctgatggcc gagggggcag atgtgatcga cctcggtccg gcatccagca atcccgacgc
     2761 cgcgcctgtt tcgtccgaca cagaaatcgc gcgtatcgcg ccggtgctgg acgcgctcaa
     2821 ggcagatggc attcccgtct cgctcgacag ttatcaaccc gcgacgcaag cctatgcctt
     2881 gtcgcgtggt gtggcctatc tcaatgatat tcgcggtttt ccagacgctg cgttctatcc
     2941 gcaattggcg aaatcatctg ccaaactcgt cgttatgcat tcggtgcaag acgggcaggc
     3001 agatcggcgc gaggcacccg ctggcgacat catggatcac attgcggcgt tctttgacgc
     3061 gcgcatcgcg gcgctgacgg gtgccggtat caaacgcaac cgccttgtcc ttgatcccgg
     3121 catggggttt tttctggggg ctgctcccga aacctcgctc tcggtgctgg cgcggttcga
     3181 tgaattgcgg ctgcgcttcg atttgccggt gcttctgtct gtttcgcgca aatcctttct
     3241 gcgcgcgctc acaggccgtg gtccggggga tgtcggggcc gcgacactcg ctgcagagct
     3301 tgccgccgcc gcaggtggag ctgacttcat ccgcacacac gagccgcgcc ccttgcgcga
     3361 cgggctggcg gtattggcgg cgctgaaaga aaccgcaaga attcgttaac tgcacattcg
     3421 ggatatttct ctatattcgc gcttcatcag aaaactgaag gaacctccat tgaatcgaac
     3481 taatattttt tttggtgaat cgcattctga ctggttgcct gtcagaggcg gagaatctgg
     3541 tgattttgtt tttcgacgtg gtgacgggca tgccttcgcg aaaatcgcac ctgcttcccg
     3601 ccgcggtgag ctcgctggag agcgtgaccg cctcatttgg ctcaaaggtc gaggtgtggc
     3661 ttgccccgag gtcatcaact ggcaggagga acaggagggt gcatgcttgg tgataacggc
     3721 aattccggga gtaccggcgg ctgatctgtc tggagcggat ttgctcaaag cgtggccgtc
     3781 aatggggcag caacttggcg ctgttcacag cctatcggtt gatcaatgtc cgtttgagcg
     3841 caggctgtcg cgaatgttcg gacgcgccgt tgatgtggtg tcccgcaatg ccgtcaatcc
     3901 cgacttctta ccggacgagg acaagagtac gccgcagctc gatcttttgg ctcgtgtcga
     3961 acgagagcta ccggtgcggc tcgaccaaga gcgcaccgat atggttgttt gccatggtga
     4021 tccctgcatg ccgaacttca tggtggaccc taaaactctt caatgcacgg gtctgatcga
     4081 ccttgggcgg ctcggaacag cagatcgcta tgccgatttg gcactcatga ttgctaacgc
     4141 cgaagagaac tgggcagcgc cagatgaagc agagcgcgcc ttcgctgtcc tattcaatgt
     4201 attggggatc gaagcccccg accgcgaacg ccttgccttc tatctgcgat tggaccctct
     4261 gacttggggt tgatgttcat gccgcctgtt tttcctgctc attggcacgt ttcgcaacct
     4321 gttctcattg cggacacctt ttccagcctc gtttggaaag tttcattgcc agacgggact
     4381 cctgcaatcg tcaagggatt gaaacctata gaagacattg ctgatgaact gcgcggggcc
     4441 gactatctgg tatggcgcaa tgggagggga gcagtccggt tgctcggtcg tgagaacaat
     4501 ctgatgttgc tcgaatatgc cggggagcga atgctctctc acatcgttgc cgagcacggc
     4561 gactaccagg cgaccgaaat tgcagcggaa ctaatggcga agctgtatgc cgcatctgag
     4621 gaacccctgc cttctgccct tctcccgatc cgggatcgct ttgcagcttt gtttcagcgg
     4681 gcgcgcgatg atcaaaacgc aggttgtcaa actgactacg tccacgcggc gattatagcc
     4741 gatcaaatga tgagcaatgc ctcggaactg cgtgggctac atggcgatct gcatcatgaa
     4801 aacatcatgt tctccagtcg cggctggctg gtgatagatc ccgtcggtct ggtcggtgaa
     4861 gtgggctttg gcgccgccaa tatgttctac gatccggctg acagagacga cctttgtctc
     4921 gatcctagac gcattgcaca gatggcggac gcattctctc gtgcgctgga cgtcgatccg
     4981 cgtcgcctgc tcgaccaggc gtacgcttat gggtgccttt ccgcagcttg gaacgcggat
     5041 ggagaagagg agcaacgcga tctagctatc gcggccgcga tcaagcaggt gcgacagacg
     5101 tcatactaga tatcaagcga cttctcctat cccctgggaa cacatcaatc tcaccggaga
     5161 atatcgctgg ccaaagcctt agcgtaggat tccgcccctt cccgcaaacg accccaaaca
     5221 ggaaacgcag ctgaaacggg aagctcaaca cccactgacg catgggttgt tcaggcagta
     5281 cttcatcaac cagcaaggcg gcactttcgg ccatccgccg cgccccacag ctcgggcaga
     5341 aaccgcgacg cttacagctg aaagcgacca ggtgctcggc gtggcaagac tcgcagcgaa
     5401 cccgtagaaa gccatgctcc agccgcccgc attggagaaa ttcttcaaat tcccgttgca
     5461 catagcccgg caattccttt ccctgctctg ccataagcgc agcgaatgcc gggtaatact
     5521 cgtcaacgat ctgatagaga agggtttgct cgggtcggtg gctctggtaa cgaccagtat
     5581 cccgatcccg gctggccgtc ctggccgcca catgaggcat gttccgcgtc cttgcaatac
     5641 tgtgtttaca tacagtctat cgcttagcgg aaagttcttt taccctcagc cgaaatgcct
     5701 gccgttgcta gacattgcca gccagtgccc gtcactccca ctcttacatt gttcgcagta
     5761 tctaggtaca tgttattgcg tgcaccttca tgatgtataa tgttattaat gacagcagaa
     5821 agatcgacag aattaatatt cttcgtacct gggacagtta tcgggtgtcg gccagtgatg
     5881 agaccaaagg atgcagtata agatgaacca ctactattat catggccacc attaccacca
     5941 ccgttaaaac tacctcccga acttccagag ccgctatgac catcattgta ggggtcattt
     6001 ggtcccatgt gaccaaaacc accgacagta ccgctattta actctgtact cataaaatta
     6061 tcctctttga cttttaaaaa cagcaaaaac tgtatttata acaatgtgtt tatatacagt
     6121 attcgaaata ctacgcccgt caaaaccaca ccgtcaacag gttttttgtg tatttttcac
     6181 gcctcacggg cagcctcaga ccttttgtgt taaaacagta at
//
