LOCUS       NC_017629               1564 bp    DNA     circular CON 08-MAY-2024
DEFINITION  Escherichia coli ABU 83972 plasmid pABU, complete sequence.
ACCESSION   NC_017629
VERSION     NC_017629.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02603258
            Assembly: GCF_000148365.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli ABU 83972
  ORGANISM  Escherichia coli ABU 83972
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 1564)
  AUTHORS   Zdziarski,J., Brzuszkiewicz,E., Wullt,B., Liesegang,H., Biran,D.,
            Voigt,B., Gronberg-Hernandez,J., Ragnarsdottir,B., Hecker,M.,
            Ron,E.Z., Daniel,R., Gottschalk,G., Hacker,J., Svanborg,C. and
            Dobrindt,U.
  TITLE     Host imprints on bacterial genomes--rapid, divergent evolution in
            individual patients
  JOURNAL   PLoS Pathog 6 (8), e1001078 (2010)
   PUBMED   20865122
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1564)
  AUTHORS   Brzuszkiewicz,E.B., Liesegang,H., Zdziarski,J., Svanborg,C.,
            Hacker,J., Dobrindt,U. and Gottschalk,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-DEC-2009) Goettingen Genomics Laboratory, Georg-August
            University Goettingen, Grisebachstrasse 8, Goettingen, Lower-Saxony
            D-37077, Germany
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000148365.1-RS_2024_05_08
            Annotation Date                   :: 05/08/2024 01:11:21
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,968
            CDSs (total)                      :: 4,852
            Genes (coding)                    :: 4,620
            CDSs (with protein)               :: 4,620
            Genes (RNA)                       :: 116
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 232
            CDSs (without protein)            :: 232
            Pseudo Genes (ambiguous residues) :: 0 of 232
            Pseudo Genes (frameshifted)       :: 97 of 232
            Pseudo Genes (incomplete)         :: 147 of 232
            Pseudo Genes (internal stop)      :: 60 of 232
            Pseudo Genes (multiple problems)  :: 62 of 232
            Pseudo Genes (short protein)      :: 4 of 232
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP001833.1.
            The strain is available from Drs C. Svanborg and Bjoern Wullt (Lund
            University, Sweden).
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1564
                     /organism="Escherichia coli ABU 83972"
                     /mol_type="genomic DNA"
                     /strain="ABU 83972"
                     /isolation_source="isolate from a young female with long
                     term asymptomatic bacteriuria (ABU)"
                     /host="Homo sapiens"
                     /db_xref="taxon:655817"
                     /plasmid="pABU"
     gene            101..580
                     /locus_tag="ECABU_RS25415"
                     /old_locus_tag="ECABU_p00010"
     CDS             101..580
                     /locus_tag="ECABU_RS25415"
                     /old_locus_tag="ECABU_p00010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001620079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_000275450.1"
                     /translation="MYIGTEEQRKKRLKELEKLNKESESDPKNNGPFTQVYQKGWERIR
                     ELSKDKQGVVAIPLYSFLAEHIDPSCGAVVADQQFLADKLGVSRSTIKRWLNYLESKNA
                     LVRIPVAGKVCAYALDPHEVWKGYNTSKNYAAFVTKTLVNKDGDIQRRIMAMFSN"
                     /name="helix-turn-helix domain-containing protein"
     Typing          1204..1284
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="96.341"
                     /coverage="87.0"
                     /evalue="2.0600000000000002e-29"
     Typing          complement(831..1091)
                     /name="Col(MG828)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="94.275"
                     /coverage="100.0"
                     /evalue="1.83e-109"
ORIGIN
        1 ggttagctca cgcatgtgtg agctaggtcg acctatcatg gtttacgttt gagctatgat
       61 ggcttatatt tgagccatca ttagaccgtg gagatttacc atgtatatcg ggactgaaga
      121 gcagcgaaaa aagcgtctaa aagaactgga aaaattaaac aaagaatcgg aatcagatcc
      181 gaaaaataac ggcccattca cccaggttta tcagaagggc tgggaaagga tccgagaact
      241 gtcgaaggac aagcagggag ttgtagcaat accgctttac tcgtttttag ctgagcacat
      301 agatccctca tgcggtgctg ttgttgccga tcagcagttt ttagcagata aattgggtgt
      361 tagccgaagc acaattaagc gctggctcaa ctacttagaa tcaaaaaacg cgttagtcag
      421 aattcctgtt gctggtaagg tttgtgcgta tgcactcgat ccacatgaag tctggaaggg
      481 atacaacaca tctaaaaact acgcggcgtt tgtcactaaa acactggtca acaaagacgg
      541 tgatattcag cgccgaatca tggccatgtt ttcaaattga gccagcggca ggcacaggca
      601 aaaaccccgt ttttggacaa tctgattcaa atgttaacat ttgacatcgg gttgtctatc
      661 ctgcattgct cttttgccgc ctcaaaatcc cttgcgtgtt tttgctcccc gatctccaga
      721 acgatcgagc cgccacggtt ccggcagcgc cttgagcgca accggaaacc gtctggggag
      781 aaccccagac ccccatcgct gtaacaccga cggtctacga ccacctacca accgagtggc
      841 tgcctgtacc gtgcaaatgg gctttgcagg gggctggcgc ggttcctggc gacctgaaag
      901 cccctggcta ggggtatcgg cgcgcctgac ctcctgaaac gctctgtaag cgtttttcgc
      961 gccttccatg ccctgacggg catttaaacc ccgtttcgtg cgtctgagag cttctgagcg
     1021 cgtttgaagg gctatctgac gacttatccc cgaaagaaca acagcggaat caccgacaac
     1081 atgcgagagg tggcaccgct cgccgcagcc ccagcgaccg cgttagtgag cgagtgggcg
     1141 aggaagcgga agagaaccgg aaaccacatt gagcacgtac gcactgatgc ggggtgtcgg
     1201 ggcgaagccc tgaccagatg gcaaacggaa tatcgtcgcg ggtgacggta ttacatttgc
     1261 acatcctgtc ccgatttctg aggcgtttta gcggtgaacg gacggcaaaa ccatgatgga
     1321 gctgttgaac gttgagagcg tgaaatctgg caaaaatcac agnctggtaa ggcttgcaga
     1381 ggagtaagcc agtatacact ccgctatcgc tacgtgactg ggtcagggct tcgccccgac
     1441 accccaaaaa agtgttccgc tttgcgcaac actttcagca gaaaagatat ttaagggcga
     1501 ttttgtaagt tattgatttt ttagctactt gcattatggg ttagctcacg catgtgtggt
     1561 ctaa
//
