LOCUS       NC_017346               2241 bp    DNA     circular CON 17-FEB-2024
DEFINITION  Staphylococcus aureus subsp. aureus ECT-R 2 plasmid pLUH01, complete
            sequence.
ACCESSION   NC_017346
VERSION     NC_017346.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA2271964
            Assembly: GCF_000253135.1
KEYWORDS    RefSeq; complete genome.
SOURCE      Staphylococcus aureus subsp. aureus ECT-R 2
  ORGANISM  Staphylococcus aureus subsp. aureus ECT-R 2
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1
  AUTHORS   Lindqvist,M., Isaksson,B., Grub,C., Jonassen,T.O. and Hallgren,A.
  TITLE     Detection and characterisation of SCCmec remnants in multiresistant
            methicillin-susceptible Staphylococcus aureus causing a clonal
            outbreak in a Swedish county
  JOURNAL   Eur J Clin Microbiol Infect Dis 31 (2), 141-147 (2012)
   PUBMED   21590357
REFERENCE   2  (bases 1 to 2241)
  AUTHORS   Jonassen,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-OCT-2010) Jonassen T., Oslo University Hospital,
            Department of Microbiology, PO box 4956 Nydalen, NO-0424 Oslo,
            NORWAY
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/17/2024 01:42:17
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,733
            CDSs (total)                      :: 2,654
            Genes (coding)                    :: 2,584
            CDSs (with protein)               :: 2,584
            Genes (RNA)                       :: 79
            rRNAs                             :: 6, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 70
            CDSs (without protein)            :: 70
            Pseudo Genes (ambiguous residues) :: 0 of 70
            Pseudo Genes (frameshifted)       :: 42 of 70
            Pseudo Genes (incomplete)         :: 33 of 70
            Pseudo Genes (internal stop)      :: 23 of 70
            Pseudo Genes (multiple problems)  :: 26 of 70
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            FR714928.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2241
                     /organism="Staphylococcus aureus subsp. aureus ECT-R 2"
                     /mol_type="genomic DNA"
                     /isolate="ECT-R 2"
                     /isolation_source="human wound secretion"
                     /host="Homo sapiens"
                     /sub_species="aureus"
                     /db_xref="taxon:889933"
                     /plasmid="pLUH01"
                     /geo_loc_name="Sweden:Linkoping"
                     /collection_date="2005-05-15"
     gene            complement(164..487)
                     /gene="qacC"
                     /locus_tag="ECTR2_RS13725"
     ARG             complement(168..487)
                     /name="qacC"
                     /gene="qacC"
                     /gene_name="quaternary ammonium compound efflux SMR
                     transporter QacC"
                     /tool="amrfinderplus"
                     /drug_class="QUATERNARY AMMONIUM"
                     /identity="100.0"
                     /coverage="100.0"
     gene            809..1813
                     /locus_tag="ECTR2_RS13730"
                     /old_locus_tag="ECTR2_2596"
     CDS             809..1813
                     /locus_tag="ECTR2_RS13730"
                     /old_locus_tag="ECTR2_2596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020368559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_001199882.1"
                     /translation="MQYNTTRCIDENQDNETLKDMTKSGKQRPWREKKIDNVSYADILE
                     ILKIKKAFNVKQCGNVLEFKPTDEGYLKLHKTWFCKSKLCPVCNWRRAMKNSYQAQKVI
                     EEVVKEKPKARWLFLTLSTKNAIDGDTLEQSLKHLTKAFDRLSRYKKVKQNLVGFLRST
                     EVTVNKNDGSYNQHMHVLLCVENSYFKNKANYITQEEWVNLWQKALQVNYRPVANIKAI
                     KPNQKGDKDIQAAIKETSKYSVKSSDFLTDDDERNQEIVNDLEKGLYRKRMLSYGGLLK
                     QKHKILNLDDAEDGNLINTSDEDKTTDEEEKAHSITAIWNFEKQNYYLKDLKR"
                     /name="protein rep"
     ARG             complement(165..487)
                     /name="qacJ"
                     /gene="qacJ"
                     /gene_name="small multidrug resistance (SMR) antibiotic
                     efflux pump"
                     /tool="rgi"
                     /drug_class="disinfecting agents and antiseptics"
                     /identity="71.96"
                     /coverage="100.0"
     Typing          810..1813
                     /name="rep_cluster_1017"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gcatttatgc cgagaaaatt tattgtgcgt tgagaagaac ccttaactaa acttgcagac
       61 gaatgtcggc atagcgtgag ctattaagcc gaccattcga caagttttgg gattgttaag
      121 ggttccgagg ctcaacgtca ataaagcaat tggaataaag caattaatgc gatgttccga
      181 aaatgtttaa cgaaactacg ccgactatga ttaaaactat agatactata gttattagat
      241 ttatttgttc tttgaaaata attattgaga ctacggttgt taagactaaa cctagtcccg
      301 cccaagttgc ataagttata tttagtggta ggtgttgcat tgttttactt aaaaaataga
      361 aacaaattcc aaatgaaatt attgttccta aggatggtat aaattttgaa aagccttctg
      421 aagatttaag aaatgcactt ccaataactt cagtacttat ggctattatt aaataaatat
      481 aaggcatttt taactccttt taattttcgt attttattta attttattct aagtattttt
      541 taattgtagt cttgtatttt gagtgtcatt cgcgtggtat ttttgtggat tgatggtttt
      601 tgaaaggttt ttgaaacgag ttgaaaacga gtttcttctt gtcttgatac tatatagaaa
      661 taactcgatt ttaaaattat agctgtaatc cttggtatgt aagggattat agctattttt
      721 cttgttgaaa ggaatttttg acataaaaaa accccagtag tatgattaaa gcgtctactg
      781 aataaacaac tactggaggt ctctttatat gcaatataat actactagat gtatagacga
      841 aaatcaagat aacgaaacac ttaaagatat gacgaaaagt gggaaacaac gcccatggag
      901 agaaaagaag atagataatg taagttatgc agatatactg gaaattttaa aaataaaaaa
      961 ggcttttaat gtaaaacaat gtggtaacgt cttagagttc aagccgactg atgaaggtta
     1021 tttgaagtta cataagacat ggttttgtaa gtcgaaactc tgcccagttt gtaattggag
     1081 gcgtgctatg aaaaatagtt atcaagctca aaaagtgatt gaagaagttg ttaaagaaaa
     1141 accaaaagcg cgttggttat ttttaacact ttcaacgaaa aatgcgatag atggggatac
     1201 tttagaacaa agtttgaaac atttaacgaa agcatttgat aggttaagta gatataaaaa
     1261 agtgaagcaa aatcttgttg ggtttttgcg ttcaacggaa gtaacggtta ataaaaatga
     1321 tggtagttat aatcaacata tgcatgtttt attatgtgtt gaaaatagtt attttaagaa
     1381 taaagctaat tatataactc aagaagaatg ggttaattta tggcaaaaag cattacaagt
     1441 aaattatcga cccgtagcaa atattaaagc gatcaaacca aatcaaaaag gcgataaaga
     1501 tattcaagca gctatcaaag aaacctctaa atattcggtt aagtcatctg attttttaac
     1561 tgatgatgat gaaagaaatc aagaaatcgt gaatgattta gaaaaaggtt tatatcgaaa
     1621 acgtatgttg agttatggtg gtttgcttaa acaaaaacat aagattttaa atttagatga
     1681 tgccgaagat ggcaatttga ttaatacaag tgacgaagat aaaacaacag acgaagaaga
     1741 aaaagcacat tcaattacgg caatttggaa ttttgaaaaa caaaattatt atttaaaaga
     1801 tttgaaacgt tagctaaaaa gctagcgttt ttttatgtct ttttgcccct gcgggaacta
     1861 tagcgttcaa ccggcatggt tgaccagttt tcatgttaac ttttaagttt gcatgtaaat
     1921 gggcagtgtc taaaaaatta gtcacagtgt ctaaaaaatt agtcactggt tttgctcaaa
     1981 tttttgtttg tgaaattaag atatatttat ttggctcata tttgcgtttt aaaagcgtat
     2041 atagactttt aggtataaaa ctatatgatt tacccctgaa tctttaaaat gcccccttaa
     2101 aattcaaata aaggcatata aaaataaaaa gccaacccag ataaaatgga ttggcttttt
     2161 atttgctttt gcgaagtaga ttataaaaaa ctacttttaa taagcaccct aaatgtgatg
     2221 tctatattat aacaagaaca c
//
