LOCUS       NC_017210               6880 bp    DNA     circular CON 07-SEP-2023
DEFINITION  Bacillus thuringiensis serovar chinensis CT-43 plasmid pCT6880,
            complete sequence.
ACCESSION   NC_017210
VERSION     NC_017210.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02603315
            Assembly: GCF_000193355.1
KEYWORDS    RefSeq.
SOURCE      Bacillus thuringiensis serovar chinensis CT-43
  ORGANISM  Bacillus thuringiensis serovar chinensis CT-43
            Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Bacillus;
            Bacillus cereus group.
REFERENCE   1  (bases 1 to 6880)
  AUTHORS   He,J., Wang,J., Yin,W., Shao,X., Zheng,H., Li,M., Zhao,Y., Sun,M.,
            Wang,S. and Yu,Z.
  TITLE     Complete genome sequence of Bacillus thuringiensis subsp. chinensis
            strain CT-43
  JOURNAL   J Bacteriol 193 (13), 3407-3408 (2011)
   PUBMED   21551307
REFERENCE   2  (bases 1 to 6880)
  AUTHORS   Shao,X., He,J., Zheng,H., Li,M., Zhang,Q., Li,L., Wang,S. and Yu,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-FEB-2010) State Key Laboratory of Agricultural
            Microbiology, Huazhong Agricultural University, 1 Shizishan Road,
            Wuhan, Hubei 430070, P. R. China
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/06/2023 01:59:30
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,409
            CDSs (total)                      :: 6,279
            Genes (coding)                    :: 5,995
            CDSs (with protein)               :: 5,995
            Genes (RNA)                       :: 130
            rRNAs                             :: 13, 13, 13 (5S, 16S, 23S)
            complete rRNAs                    :: 13, 13, 13 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 284
            CDSs (without protein)            :: 284
            Pseudo Genes (ambiguous residues) :: 0 of 284
            Pseudo Genes (frameshifted)       :: 180 of 284
            Pseudo Genes (incomplete)         :: 114 of 284
            Pseudo Genes (internal stop)      :: 48 of 284
            Pseudo Genes (multiple problems)  :: 46 of 284
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP001912.1.
            Contact Pro. Ziniu Yu (yz41@mail.hzau.edu.cn) for information about
            this strain.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..6880
                     /organism="Bacillus thuringiensis serovar chinensis CT-43"
                     /mol_type="genomic DNA"
                     /strain="CT-43"
                     /serovar="chinensis"
                     /db_xref="taxon:541229"
                     /plasmid="pCT6880"
     gene            399..1013
                     /locus_tag="CT43_RS30300"
                     /old_locus_tag="CT43_P6001"
     CDS             399..1013
                     /locus_tag="CT43_RS30300"
                     /old_locus_tag="CT43_P6001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001133991.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_001133991.1"
                     /translation="MPNTIEFKQVEKNARIRDLEIENEKFKQDHHEVSKDELEKAMETM
                     AKATGKELYIGTKKSPHSRVRFAQSLQENLGFLNKNGYLTNKEKVFLSDITPYIAFSSN
                     CIVHDIKAKNPVPANVSEIAKLIGISRQNTSLAINSLVKKGLLFKGDSGVEGNNAKAYA
                     VFVNPHIIYAGDKDSVNEALQVMFYKAMKMKILKDLPDKLF"
                     /name="helix-turn-helix domain-containing protein"
     gene            1557..1853
                     /locus_tag="CT43_RS30305"
                     /old_locus_tag="CT43_P6002"
     CDS             1557..1853
                     /locus_tag="CT43_RS30305"
                     /old_locus_tag="CT43_P6002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016099256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000043575.1"
                     /translation="MSKQQVKFYVMEKEMERLKLLSEMRYMTVPNYAKLTALGVQIRQP
                     KEIVVGNVELQEEDKAILKEILERRRGISYIAYDTGFNQRLEQLAKRLLGEEG"
                     /name="hypothetical protein"
     gene            2266..3582
                     /gene="mobV"
                     /locus_tag="CT43_RS30315"
                     /old_locus_tag="CT43_P6003"
     CDS             2266..3582
                     /gene="mobV"
                     /locus_tag="CT43_RS30315"
                     /old_locus_tag="CT43_P6003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016099255.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobV family relaxase"
                     /protein_id="WP_001031673.1"
                     /translation="MNKFAIIHMQKFQISDVQGIQKHNQRQGKSKSNLDIDYSKSEQNY
                     DLLNQQKIRYESTIKQEISERVKRKPRANSVVLSEFVVTASPDYMHSLRLEEQKRYFES
                     SLVFIQKRYGKQNTLYAMVHMDEATPHMHIGVMPITEDNRLSAKDMFTRKELISLQQDF
                     PLEMREKGFDVERGEGSEKKHLSPQAFKEKQDLEIEVKQLSNVKTHLKTKVVETHNQLQ
                     QTTNYIEKQNETLQKIQQQFLSLDKKIKEKKQEFEMFRNQIPDKSVSMSYLREETKTEV
                     TTKLFGKPEIIEKKTGNIVVTREQWRDMTEKVNAAVIIKSDYESLQKTDLVKENKQLHE
                     AVDGICDSLQDSQKRNLKLQEENKQLRTEISSLKAHIRDLQINIKVLYQQTKKVFKEQF
                     KAFRGLIKNELDIKDVDNQFEREHAREVKSRQKGYDMER"
                     /name="mobV"
     gene            4493..5236
                     /locus_tag="CT43_RS30320"
                     /old_locus_tag="CT43_P6005"
     CDS             4493..5236
                     /locus_tag="CT43_RS30320"
                     /old_locus_tag="CT43_P6005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003308357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000782444.1"
                     /translation="MKMKKLGAGLLSAALLFPVVAPVVSHAEENTTVSEKNQIQETTKK
                     YFKSVEGMGTQYTEKQSKEIIDSVAIVSKYIKPNEHNQLELDSKVKEQVSPFVYEHYQR
                     GIQAINQATEAGYATINVENNKLEATPLANSSMNNLVGFNAKDGIQYSSVDSYWWGVKW
                     YMSKSESQQWQNNFADGSFYWGSIAAITGLLTPFFPPAAIASAVSVIMSVGNYHCYREL
                     RDHTSSRGSVMTISWLDKEIYANKR"
                     /name="hypothetical protein"
     gene            5263..5529
                     /locus_tag="CT43_RS30325"
     CDS             5263..5529
                     /locus_tag="CT43_RS30325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016099260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000144827.1"
                     /translation="MTFVMIQIGIAIFLLFIIGLIYKVIGKKFNSKFSMYFLVIIVFFA
                     LLFLVISEINTNGFTDLKVLVFLPLIVLSLILLIINAIKSKKI"
                     /name="hypothetical protein"
     gene            complement(5594..5734)
                     /locus_tag="CT43_RS34735"
     CDS             complement(5594..5734)
                     /locus_tag="CT43_RS34735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000751239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000751237.1"
                     /translation="MKKTILTLMGIITVFTLTLSNINTPKENKDPSIQKIMLMSDGNTG
                     G"
                     /name="hypothetical protein"
     gene            complement(5731..6825)
                     /locus_tag="CT43_RS30330"
                     /old_locus_tag="CT43_P6006"
     CDS             complement(5731..6825)
                     /locus_tag="CT43_RS30330"
                     /old_locus_tag="CT43_P6006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011983575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000383146.1"
                     /translation="MDVQTKSNEQITNMLNDWYIEIRARHLGNAHKLRLEIDKKIHNIE
                     EDQNLLLYYSLLDFRHQYLIDHLSIGKDSFDKIESFNTPTDNLLSYYYFFFKAIHATSI
                     GNYNLAREYYDKAEIKLKEIPDQLEHAEFYYKLSTFSCHNQQYVPAIKQASKAKEIFSK
                     YKGYELNIGYCNNLSGLSCTHLKEYELAEEYFISAIDIFQKEKEEQAILYVRHNLGFMY
                     AKQNLSELAIRYLSEVIQKSPNNYRAILIEACEHAKLNNKNKALELLEKGLKISNNLKI
                     EEYQHRFKILLAINNEIPGEKLEQIILAGMIYFEKENLYEYIAEYNETLAIKFYHEDNH
                     SKASKYFYLSSKARKKSHNKGALK"
                     /name="hypothetical protein"
     Typing          2267..3579
                     /name="MOBV"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="90.112"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 taacatatat ctaatttatt aaatttgaaa aatatatttt agaatattct gaaatatcaa
       61 gttgaaaaag atgttaaaaa gcaaaaaagc cttataaaat aaggattttt tgctaatggt
      121 tgtaataagg tattcgtctt attgacattt ttaggatatc aaacttagaa aaaaatgtat
      181 atatttaatt ttgaaaatat aaaaagtcag acaagataca acaaaaaaag ccattcatgc
      241 tataattgag ttgttcagaa acaactatag aagaagggct ttttttactg ttatacaatt
      301 aattagagtg ttcagactca aattaattta tctaactaca taataacaaa atagaagtct
      361 cttcgctagt tgtaaatact agaaacgagg agaaaagtat gccaaacact attgaattta
      421 aacaggttga gaaaaatgca agaatacgtg atttagaaat agaaaatgaa aaatttaagc
      481 aagatcatca tgaagtttct aaagatgaat tagaaaaagc aatggaaact atggcaaaag
      541 caactggtaa agagctttac ataggtacta aaaaaagccc acattcgaga gtgaggtttg
      601 ctcaatcatt gcaagaaaat ctaggtttct taaataaaaa tggatattta actaataaag
      661 aaaaagtatt tttaagtgat ataacacctt atatagcttt ctcgagcaat tgtattgttc
      721 atgatattaa agctaaaaat cctgttcctg ctaatgtttc agagattgca aaattaattg
      781 gcatttcaag acaaaataca agcttagcaa taaattcatt agttaaaaag ggtcttttat
      841 tcaaagggga ttcaggtgtt gagggaaata atgctaaagc atatgcggtc tttgtaaatc
      901 cacacattat ttacgctgga gataaagata gtgtgaatga agcacttcaa gtaatgtttt
      961 ataaggctat gaaaatgaaa atattaaaag atttgccaga taaattattt taggattgac
     1021 aattcgtcaa tcctattttt tttagctttt cgtgtgtcat gatttcatga cacatgtgtc
     1081 atgatttcgt gacacacgaa aagctttgta aatactgata tatcaaggtt ttttttactt
     1141 ttaaaactct ctctcttctc actctatata tagagggcta aaagttccgc aaggaacagg
     1201 ttgtattttt gagtaaaaag cactcaaaaa tctccacctt tttcactacg tttcttcctt
     1261 gcggaacttt tttcggctgg tttttagctt tcgccaagcc gaacagacca aaaacggggt
     1321 taagttgctc gacttggact agcaattgta ccagccgaac cgccaattct tacgttcaaa
     1381 gcatgattct ttttccatac agatcaacgc tatgtggggt ttcgccccca cacgtcgagc
     1441 cagcactcac acccaaaaac aggggagaag ataatttctc gttccgattt agtactaaaa
     1501 aggactataa tggaactatt aaaatagtac tatttagttt attggaggtc gtgtgaatgt
     1561 ctaaacaaca ggttaaattc tatgttatgg aaaaggaaat ggagcgttta aaacttttgt
     1621 ctgaaatgcg atatatgaca gttcctaatt atgcaaagct aacagcatta ggtgtgcaaa
     1681 ttagacagcc aaaagagata gttgtaggca atgtagaatt acaagaagaa gataaagcga
     1741 tattaaaaga aattttggag agaagacgag gaattagtta tatagcttat gacacaggat
     1801 ttaaccagcg attggaacaa ctcgcaaaac gactattggg agaagaagga taagcggtaa
     1861 gtgtcaatgg taagcggact ggaagggatc agcggtttat gctgatccct gaaaggagca
     1921 ttaaggaatg gacacgtgca gccgattctc catcctcttg gcagttcctc aaaacgaatc
     1981 gttttgggga cgccaaccgg cgagggagcc cctcaaggat tgaggggttg gggagttcga
     2041 ttggtggggt caaggggaag agttcccctt gtggggtttg gggcaaagcc cctggtgttt
     2101 atcacgctgt ggcgtgattt ggcgaagcca acaaggtctc gcagagccca caccaaatgg
     2161 aatttggtat agtgggctat accaaaactt tggattcgct ctctcaatat gttatgatag
     2221 tctcaaaagt agtcctctta cggaagacaa ttgtgaggga aaaacatgaa caaattcgca
     2281 atcattcaca tgcagaaatt tcaaatttct gatgtgcaag gaattcaaaa acataatcag
     2341 agacaaggaa aaagtaaatc caatttggat attgattatt cgaaaagtga acaaaattat
     2401 gatttgttga atcagcaaaa aattagatat gaaagcacaa ttaaacaaga gatcagtgaa
     2461 cgagtaaaac gaaagccacg agccaattcg gttgtacttt cagaatttgt agtaacagct
     2521 tcgcctgatt acatgcattc attacgttta gaggaacaga aacgttattt tgagagttca
     2581 ctagtgttta ttcaaaaacg ttatgggaaa caaaatacgt tgtatgcgat ggttcatatg
     2641 gatgaagcga caccacatat gcatattggt gtcatgccaa ttacagaaga caatcgtttg
     2701 tccgcaaaag atatgtttac gagaaaagag ctcatatctt tacaacagga cttcccgttg
     2761 gaaatgcggg aaaaaggttt tgatgtagag cggggagaag gttcagagaa aaaacattta
     2821 tcgcctcaag cctttaagga aaaacaagat ttagaaatag aagtgaaaca attatccaat
     2881 gtaaaaacgc atttaaagac aaaagtagtg gaaacgcata atcaattaca acaaaccaca
     2941 aactacatcg aaaaacagaa tgaaacgtta caaaaaattc agcaacaatt tttgagttta
     3001 gataaaaaaa taaaagaaaa gaaacaggaa tttgaaatgt ttcgaaacca aattccggat
     3061 aagtcagtgt caatgtctta tttgcgagaa gaaacaaaaa cagaagtaac aacaaaactg
     3121 tttggaaaac cagaaatcat agagaaaaaa acaggaaaca tcgtggttac acgtgagcaa
     3181 tggagagata tgacagaaaa agtgaatgca gcggttatta taaagagcga ttatgaaagt
     3241 ttgcaaaaaa cggatcttgt aaaagaaaac aaacaattac atgaggcagt cgatggaata
     3301 tgcgattcac ttcaagattc tcaaaagaga aatttaaagt tacaagagga aaacaaacaa
     3361 ttaagaacag aaataagctc gttaaaggct catataagag acttgcagat taatataaag
     3421 gttttatatc aacagacgaa aaaagtcttt aaagagcaat ttaaggcgtt tagaggactt
     3481 attaagaacg aattggatat aaaggatgta gataatcaat ttgaacgtga acatgcaaga
     3541 gaagtaaaaa gtagacagaa aggatatgac atggaacgtt agaaaaaggt atgttgtaaa
     3601 aaagagcata aggaaaccga atcccacttt gtataaaaag tggtgaaata ggctgtgcct
     3661 attgggtttc taaagatttc tagctggtac gctttttcta tgatctgtgg tcgtctagtg
     3721 gtcgtttata gctgttctgt ggccttccag tggcctttgg tggtcattta gtggctgttt
     3781 aaaatgtact aaaaatttaa atatgctaca ataaatatcc atcacaaata actttttaaa
     3841 ggttacatct aaaaaatctc tttgtatatt tatatataaa gagatttttt acgtttatgt
     3901 aattgaaatt atgttaaagt taacaagact acatttgaga atgtgggttc aagttgctgt
     3961 ttgactgaat tgcacaaaaa aaccaattcc attacacggg aattggtttt tttggtgtct
     4021 ttgggttgta gatttattga cagcctaaag gagattagtt tctttatagt ctagtataac
     4081 taaaatagaa agaaaattca aaaataaaag gatgaatgtt tacatatttt caaatcagaa
     4141 cacaaaaatg taaggatttg ggctataatg agtagtgaaa cactctccta tgtttctagt
     4201 gattgtatct gtttttggtg cgaaatctgt agatagattt tgcacttttt tattttttgt
     4261 tgaataggat cagtgtcatt taaataagat tgatttcaat ctattaattt tattggattg
     4321 taagagtatt ttgaggaaat gtcgaaatat attaattcgt attattctta aatttgttta
     4381 ttttctgaaa agtataagtt aatataatga tgtaccagat aatgggataa tttacaaatt
     4441 cagatatgta aatgttaatt atttggaaat taaatatgaa gggatgaata ttatgaaaat
     4501 gaaaaaatta ggagcaggat tactttcagc ggctttatta tttccagtgg tagcaccggt
     4561 tgtttctcat gcagaagaaa atacaactgt atctgagaaa aatcaaattc aagagacaac
     4621 aaaaaaatat tttaaatctg tagaagggat gggaactcaa tatactgaaa aacaatctaa
     4681 agaaattatt gattctgtag ctattgttag taaatatatt aaaccaaatg aacataatca
     4741 attagaatta gattcaaaag ttaaagaaca ggttagtcct tttgtttatg agcattatca
     4801 aagaggtatt caagctatta atcaggcaac tgaagcagga tatgcaacga taaatgtaga
     4861 aaataataaa ctggaagcta ctccattagc aaatagttct atgaataatt tagtggggtt
     4921 taatgctaaa gatggaattc aatattcatc tgtagattct tattggtggg gcgttaaatg
     4981 gtatatgtca aagagtgaat cccaacaatg gcaaaataat tttgctgatg ggtcatttta
     5041 ttggggaagt atagccgcta ttactggatt attaactcca tttttcccac cagcagccat
     5101 agcttcagca gtttcagtaa ttatgtctgt tggaaattat cattgttata gagaattacg
     5161 cgatcacaca agttcacgtg gttcagtaat gacgattagt tggttggata aagaaattta
     5221 cgctaataaa agataagtat tttttaagta ggagttgaga taatgacttt cgtaatgata
     5281 cagattggta tagctatatt cctacttttt ataattggat tgatttataa agttatcggg
     5341 aaaaaattta acagtaaatt tagtatgtat tttttagtta tcattgtgtt ttttgcttta
     5401 ttatttttgg tgataagtga gattaataca aatggattta cagatttaaa ggttttagtg
     5461 tttttacctt taattgtatt gagtcttatt ctccttataa taaatgcaat aaaatcaaaa
     5521 aaaatataga actttcaact taaataaaag aaataaaagc cactttaaag tggcttttat
     5581 ttcttttatt tggttaaccg cctgtgtttc catcagacat tagcattatt ttttgaatag
     5641 atgggtcttt gttttctttt ggagtattga tattgcttag agttaaagta aagacagtaa
     5701 taattcccat taatgttagg attgtttttt tcattttaaa gcccccttat tatgagattt
     5761 ttttcttgct tttgaactta aatagaaata tttacttgct tttgagtgat tatcttcatg
     5821 ataaaatttt attgctaatg tttcgttata ttcggcaatg tactcatata gattttcttt
     5881 ttcaaaatag atcattcctg ctaatattat ttgttctaat ttttctccag gtatttcatt
     5941 gtttattgct agtaaaatct taaatcgatg ttgatattct tcaattttga ggttattact
     6001 aatttttaga cctttttcga gaagttctaa tgctttgttt ttgttattta gttttgcatg
     6061 ttcgcatgct tcaattaaga ttgctctgta gttatttggt gatttttgaa taacttcgga
     6121 taaatagcga attgctaatt ctgataaatt ttgttttgca tacataaatc ctagattatg
     6181 acgaacatat aaaatagctt gttcttcttt ttctttttgg aatatatcta ttgctgatat
     6241 aaagtattct tcagctaatt cgtattcttt tagatgtgtg catgataatc cagaaaggtt
     6301 attacaatag cctatgttta attcatatcc tttgtattta gaaaagattt cttttgcttt
     6361 agatgcttgt ttaatagccg gaacatattg ttgattgtgg cagctaaatg tggaaagttt
     6421 ataataaaat tcagcgtgtt ccaattggtc tggtatttct tttaatttta tttcagcttt
     6481 gtcatagtat tctcttgcta agttgtagtt tccgatgcta gttgcgtgta tggctttaaa
     6541 aaagaaataa tagtatgaga gaagattatc tgtaggtgtg ttaaaagatt caattttgtc
     6601 gaagctatcc ttaccaatac ttaaatgatc gattagatat tggtggcgaa aatctaatag
     6661 tgaatagtat aaaagtagat tttggtcttc ttctatgtta tggatttttt tatcaatttc
     6721 taatcttaat ttatgcgcat tacctaaatg tctagcacga atttcgatat accagtcatt
     6781 taacatgttt gtgatttgtt cattactttt tgtttgaacg tccacaaaat agcccccttt
     6841 tttacgaatg tatattattt ccacttattt tatcatgtct
//
