LOCUS       NC_016140               2407 bp    DNA     circular CON 11-SEP-2023
DEFINITION  Staphylococcus hyicus plasmid p7313178-1, complete sequence.
ACCESSION   NC_016140
VERSION     NC_016140.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14226100
KEYWORDS    RefSeq.
SOURCE      Staphylococcus hyicus
  ORGANISM  Staphylococcus hyicus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 2407)
  AUTHORS   de Vries,L.E., Christensen,H. and Agersoe,Y.
  TITLE     Structural alterations conferring constitutive expression of diverse
            erm(C) depend on the gene sequence that is linked to replicon types
            in staphylococci plasmids
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2407)
  AUTHORS   de Vries,L.E., Christensen,H. and Agersoe,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2011) National Food Institute, Trchnical
            University of Copenhagen, DTU, Kemitorvet, Building 204 st, Kgs.
            Lyngby 2800, Denmark
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Date              :: 09/11/2023 03:06:11
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.6
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 2
            CDSs (total)                 :: 2
            Genes (coding)               :: 2
            CDSs (with protein)          :: 2
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            JF968543.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2407
                     /organism="Staphylococcus hyicus"
                     /mol_type="genomic DNA"
                     /strain="7313178-1"
                     /host="pig"
                     /db_xref="taxon:1284"
                     /plasmid="p7313178-1"
                     /geo_loc_name="Denmark"
     gene            84..818
                     /gene="erm(C)"
                     /locus_tag="HS774_RS00005"
                     /old_locus_tag="D681_p2001"
     ARG             85..815
                     /name="erm(C)"
                     /gene="erm(C)"
                     /gene_name="23S rRNA (adenine(2058)-N(6))-methyltransferase
                     Erm(C)"
                     /tool="amrfinderplus"
                     /drug_class="LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN"
                     /identity="100.0"
                     /coverage="100.0"
     gene            1266..1742
                     /locus_tag="HS774_RS00010"
                     /old_locus_tag="D681_p2002"
     CDS             1266..1742
                     /locus_tag="HS774_RS00010"
                     /old_locus_tag="D681_p2002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000664727.1"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA];
                     GO:0006276 - plasmid maintenance [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="WP_000664727.1"
                     /translation="MKERYGTVYKGSQRLIDEESGEVIEVDKLYRKQTSGNFVKAYIVQ
                     LISMLDMIGGKKLKIVNYILDNVHLSNNTMIATTREIAKATGTSLQTVITTLKILEEGN
                     IIKRKTGVLMLNPELLMRGDDQKQKYLLLEFGNFEQEANEKQENALSDYYSFKD"
                     /name="replication/maintenance protein RepL"
     ARG             85..818
                     /name="ErmC"
                     /gene="ErmC"
                     /gene_name="Erm 23S ribosomal RNA methyltransferase"
                     /tool="rgi"
                     /drug_class="macrolide antibiotic; lincosamide antibiotic;
                     streptogramin antibiotic; streptogramin A antibiotic;
                     streptogramin B antibiotic"
                     /identity="99.59"
                     /coverage="100.0"
     Typing          1267..1752
                     /name="rep_cluster_1947"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.591"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ttattcaacc aaacaaaaaa taagtggtta taatgaatcg ttaataagca aaattcatta
       61 taaccaaatt aaagagggtt ataatgaacg agaaaaatat aaaacacagt caaaacttta
      121 ttacttcaaa acataatata gataaaataa tgacaaatat aagattaaat gaacatgata
      181 atatctttga aatcggctca ggaaaagggc attttaccct tgaattagta cagaggtgta
      241 atttcgtaac tgccattgaa atagaccata aattatgcaa aactacagaa aataaacttg
      301 ttgatcacga taatttccaa gttttaaaca aggatatatt gcagtttaaa tttcctaaaa
      361 accaatccta taaaatattt ggtaatatac cttataacat aagtacggat ataatacgca
      421 aaattgtttt tgatagtata gctgatgaga tttatttaat cgtggaatac gggtttgcta
      481 aaagattatt aaatacaaaa cgctcattgg cattattttt aatggcagaa gttgatattt
      541 ctatattaag tatggttcca agagaatatt ttcatcctaa acctaaagtg aatagctcac
      601 ttatcagatt aaatagaaaa aaatcaagaa tatcacacaa agataaacag aagtataatt
      661 atttcgttat gaaatgggtt aacaaagaat acaagaaaat atttacaaaa aatcaattta
      721 acaattcctt aaaacatgca ggaattgacg atttaaacaa tattagcttt gaacaattct
      781 tatctctttt caatagctat aaattattta ataagtaagt taagggatgc ataaactgca
      841 tcccttaact tgtttttcgt gtacctattt tttgtgaatc gattatgtct tttgcgcatt
      901 cacttctttt ctatataaat atgagcgaag cgaataagcg tcggaaaagc agcaaaaagt
      961 ttcctttttg ctgttggagc atgggggttc agggggtgca gtatctgacg tcaatgccga
     1021 gcgaaagcga gccgaagggt agcatttacg ttagataacc ccctgatatg ctccgacgct
     1081 ttatatagaa aagaagattc aactaggtaa aatcttaata taggttgaga tgataaggtt
     1141 tataaggaat ttgtttgttc taatttttca ctcattttgt tctaatttct tttaacaaat
     1201 gttctttttt ttttagaaca gttatgatat agttagaata gtttaaaata aggagtgaga
     1261 aaaagatgaa agaaagatat ggaacagtct ataaaggctc tcagaggctc atagacgaag
     1321 aaagtggaga agtcatagag gtagacaagt tataccgtaa acaaacgtct ggtaacttcg
     1381 taaaggcata tatagtgcaa ttaataagta tgttagatat gattggcgga aaaaaactta
     1441 aaatcgttaa ctatatccta gataatgtcc acttaagtaa caatacaatg atagctacaa
     1501 caagagaaat agcaaaagct acaggaacaa gtctacaaac agtaataaca acacttaaaa
     1561 tcttagaaga aggaaatatt ataaaaagaa aaactggagt attaatgtta aaccctgaac
     1621 tactaatgag aggcgacgac caaaaacaaa aatacctctt actcgaattt gggaactttg
     1681 agcaagaggc aaatgaaaaa caagaaaatg cattatctga ttattattct ttcaaggact
     1741 agtataacat aaaatcgtct acaaatagac aaaaaacctg cacgcttaat gtagatcaaa
     1801 agcttaacgc aaatgaaata gattgacctc ccaataacac cacgtagtta ttgggaggtc
     1861 aatctatgaa atgcgattaa gctttttcta attcacataa gcgtgcaggt ttaaagtaca
     1921 taaaaaatat aatgaaaaaa agcatcatta tactaacgtt ataccaacat tatactctca
     1981 ttatactaat tgcttattcc aatttcctat tggttggaac caacaggcgt tagtgtgttg
     2041 ttgagttggt actttcatgg gattaatccc atgaaacccc caaccaactc gccaaagctt
     2101 tggctaacac acacgccatt ccaaccaata gttttctcgg cataaagcca tgctctgacg
     2161 cttaaatgca ctaatgcctt aaaaaaacat taaagtctaa cacactagac ttatttactt
     2221 cgtaattaag tcgttaaacc gtgtgctcta cgaccaaaag tataaaacct ttaagaactt
     2281 tcttttttct tgtaaaaaaa gaaactagat aaatctctca tatcttttat tcaataatcg
     2341 catcagattg cagtataaat ttaacgatca ctcatcatgt tcatatttat cagagctcgt
     2401 gctataa
//
