LOCUS       NC_014543               4073 bp    DNA     circular CON 16-JUN-2024
DEFINITION  Escherichia coli O26:H11 str. 11368 plasmid pO26_4, complete
            sequence.
ACCESSION   NC_014543
VERSION     NC_014543.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00060955
            Assembly: GCF_000091005.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli O26:H11 str. 11368
  ORGANISM  Escherichia coli O26:H11 str. 11368
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1
  AUTHORS   Ogura,Y., Ooka,T., Iguchi,A., Toh,H., Asadulghani,M., Oshima,K.,
            Kodama,T., Abe,H., Nakayama,K., Kurokawa,K., Tobe,T., Hattori,M. and
            Hayashi,T.
  TITLE     Comparative genomics reveal the mechanism of the parallel evolution
            of O157 and non-O157 enterohemorrhagic Escherichia coli
  JOURNAL   Proc Natl Acad Sci U S A 106 (42), 17939-17944 (2009)
   PUBMED   19815525
REFERENCE   2  (bases 1 to 4073)
  AUTHORS   Hattori,M., Toh,H., Oshima,K., Yamashita,A., Hayashi,T., Ogura,Y.
            and Ooka,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-DEC-2008) Contact:Masahira Hattori University of
            Tokyo, Graduate School of Frontier Sciences; 5-1-5 Kashiwanoha,
            Kashiwa, Chiba 277-8562, Japan URL
            :http://www.cb.k.u-tokyo.ac.jp/hattorilab/
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000091005.1-RS_2024_06_16
            Annotation Date                   :: 06/16/2024 13:50:41
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,020
            CDSs (total)                      :: 5,886
            Genes (coding)                    :: 5,560
            CDSs (with protein)               :: 5,560
            Genes (RNA)                       :: 134
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 101
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 326
            CDSs (without protein)            :: 326
            Pseudo Genes (ambiguous residues) :: 0 of 326
            Pseudo Genes (frameshifted)       :: 116 of 326
            Pseudo Genes (incomplete)         :: 200 of 326
            Pseudo Genes (internal stop)      :: 80 of 326
            Pseudo Genes (multiple problems)  :: 61 of 326
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            AP010957.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4073
                     /organism="Escherichia coli O26:H11 str. 11368"
                     /mol_type="genomic DNA"
                     /strain="11368"
                     /serovar="O26:H11"
                     /db_xref="taxon:573235"
                     /plasmid="pO26_4"
                     /note="enteropathogenic Escherichia coli"
     gene            1..594
                     /locus_tag="ECO26_RS35020"
                     /old_locus_tag="ECO26_p4-1"
     CDS             1..594
                     /locus_tag="ECO26_RS35020"
                     /old_locus_tag="ECO26_p4-1"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_012537770.1"
                     /translation="MSGRKFGRLPNWWARSSWLVNNVRSNEIGGGIASMKCLLALSVLI
                     DFHSRTASVSFTGMERLTGLSRPMIVKGVAKLEKDGLIKIDREMFVNSYELTVQPNDDR
                     WAKVPVDTIRKKLNTISNRGMAPFVALKLYLTIISLRYQSNNTVKVTHETLRSYTGVQP
                     NQIRFGLDVLYCSRLIHLQPKEDRESNIYEIIGL"
                     /name="hypothetical protein"
     gene            1367..1561
                     /locus_tag="ECO26_RS30620"
                     /old_locus_tag="ECO26_p4-2"
     CDS             1367..1561
                     /locus_tag="ECO26_RS30620"
                     /old_locus_tag="ECO26_p4-2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_001041633.1"
                     /translation="MNKQQQTALNMARFIKSQSLTLLEKLDALDADEQAAMCERLHELA
                     EELQNSIQVRFETESETGT"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            2227..2340
                     /locus_tag="ECO26_RS35595"
     CDS             2227..2340
                     /locus_tag="ECO26_RS35595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_071531573.1"
                     /translation="MHEPPVQPDRCALSGNYRLESNPVRHALTPLAAATGN"
                     /name="replication initiation protein"
     gene            2566..3480
                     /locus_tag="ECO26_RS30625"
                     /old_locus_tag="ECO26_p4-3"
     CDS             2566..3480
                     /locus_tag="ECO26_RS30625"
                     /old_locus_tag="ECO26_p4-3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001448734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Abi family protein"
                     /protein_id="WP_001448734.1"
                     /translation="MPNTIHYPHVIPFISQGKINAIKSTFGNNLSDRECYGIYIWSQKA
                     SSAIYPLLQQLEVTLRNSIDKEATKLIGQKWWDNVYTDTSKSKHGDFIHNINKAKRRYE
                     NEFKKKNPSMANTKIIAPHDDIIAHTDFYTWQAVLSDAFHTQSRSEASRALWPRLTYRV
                     LKGLDRSKDEGTARIDFLNELNEIRNYRNRLSHNDCIWIKIHSKNLQSAVETIREKINK
                     IEGLIKTINPQVHLSLTKWGSFYHAKRICSQKEAELHLGKGIINSTTDEMNTILDQLYA
                     LTADGKLTGVVKRNTNNIAFHKF"
                     /name="Abi family protein"
     Typing          complement(853..1108)
                     /name="MOBF"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="93.411"
                     /coverage="89.0"
                     /evalue="2.67e-103"
     Typing          complement(1233..1331)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="98.0"
                     /coverage="100.0"
                     /evalue="1.35e-41"
     Typing          complement(1643..1729)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.43e-38"
     Typing          1740..2299
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="95.204"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 atgagcggta gaaaatttgg caggcttcca aactggtggg cccgaagctc atggcttgta
       61 aacaatgttc gttcaaatga gatagggggc ggcattgcat caatgaaatg cttgttagct
      121 ctatccgtct tgattgattt ccattcaaga acagcctcag tatcatttac cggaatggaa
      181 agactgactg gactaagccg ccccatgata gtgaaaggag tagccaaact tgagaaagat
      241 ggtcttataa agatagatag agagatgttt gttaactcct atgaattaac agtacagcca
      301 aatgatgata ggtgggcaaa agtaccagta gatactatca ggaaaaaact aaacaccata
      361 tcgaacaggg ggatggcccc atttgtggca ttaaaactat atttaacaat tataagcctt
      421 cgttatcagt caaataatac tgttaaggtg acacatgaaa cactgagaag ctatacaggt
      481 gtccagccaa accagattag gttcggctta gatgtactgt actgtagtcg cctgatacat
      541 ctgcaaccaa aagaagatag agagtcaaac atctatgaaa taatcggcct atgaggaaat
      601 gcatttacca taacgtcgca ttacgcgcac cgctaaaacg cactgaacgc gattctgacg
      661 cagataccgc aaaaagagat gttttaccca gtgaaaaccg aaaaaatgcg tcaggatcgt
      721 tttcagccca ctgcatagct atgcatgaaa atgaatgacg aacggtttgg gcgcatacgg
      781 tgcccatgag acacattttc ggacattttc agttcgtgaa tccctgactc attgctacat
      841 atctgaacag acacccctgg cagcgccccc aggggcgtcc tgtaaaaaaa cacaccgcgc
      901 cgctagcagc acccctgata taaaatgatg ttttttataa aaatagtcag taccacccct
      961 acaaagcggt gtcggcgcgg tgttgtagct gcgccggcac cgctttttta aatatcgcaa
     1021 agagagcaag agaaactaat ttttcataac tctctattta taaagaaaaa tcagcaaaaa
     1081 cttgtttttg cgtggggtgt gggcatttca ggaatgagaa cagactcgcg tttttccgga
     1141 gtatcagcgg aattattgat taagaaacac tcgacgcaga gcgaaatttt atgcaacagc
     1201 ggctgcactg cacagggatt atttatcagt tgatatgctg tgccatgata cgtcctaaaa
     1261 aaacaggaca ggatgtgcaa ttgtaatacc gtcgcccgca acgtcttaca attaccagct
     1321 gctcagggtc cccccgacac ccggaactga cggagaacaa cggaaggtga acaaacaaca
     1381 acaaactgcg ctgaatatgg cgcgatttat caaaagccag agcctgacac tgcttgaaaa
     1441 actggatgct ctggatgccg acgaacaggc agccatgtgc gaacgactgc acgaactcgc
     1501 ggaagaactc cagaacagca tccaggttcg ctttgagacc gaaagtgaaa caggaacata
     1561 acgaagctgc cgaaaacgct cacggcttgt ccgcgagcgt tttcggcagc agacaagccc
     1621 gtcagggcgc gtcagggggt tttagcgggt gtcggggcgc agccatgacc cagtcacgta
     1681 gcgatagcgg agtgtatact ggcttaacca tgcggcatca gtgcggattg tatgaaaagt
     1741 gccccatgcc gggtgtgaaa tgccgcacag atgcgtaagg agaaaatgca cgtccaggcg
     1801 cttttccgct tcctcgctca ctgactcgct acgctcggtc gttcggctgc ggcgagcggt
     1861 actgactcac acaaaaacgg taacacagtt atccacagaa tcaggggata agaccggaaa
     1921 gaacatgtga gcaacaaggc aaagccagga caaaaggccg cgccgctggc gtttttccat
     1981 aggctccgcc cccctgacga gcatcacaaa aaccgacgct caagtcagag gtggcgaaac
     2041 ccgacaggac tataaagata ccaggcgttt ccccctggaa gctccctcgt gcgctctcct
     2101 gttccgaccc tgccgcttac cggatacctg tccgcctttc tcccttcggg aagcgtggcg
     2161 ctttctcata gctcacgctg ttggtatctc agttcggtgt aggtcgttcg ctccaagctg
     2221 ggctgtgtgc acgaaccccc cgttcagccc gaccgctgcg ccttatccgg taactatcgt
     2281 cttgagtcca acccggtaag gcacgcctta acgccactgg cagcagccac tggtaactga
     2341 tttagaggag tttgtcttga agttatgcac ctgttaaggc taaactgaaa gaacagattt
     2401 tggtgactgc gctcctccaa gccagttacc ttggttcaca gagcgccaac tctttgaacc
     2461 ttcgaaaaac cgcccgccaa ggcggttttt tcgtttaaca ctctacaact atccatacgt
     2521 gtatggcaac atccaatcac cactaagtgt atgatagaga tggatatgcc aaatacaatt
     2581 cattaccctc atgtaatacc atttatatcc caaggaaaaa taaatgctat aaaaagcacg
     2641 tttggtaata acctgtctga tagggagtgc tacgggatat atatatggag ccagaaagcc
     2701 tcatctgcca tatatccatt actgcaacaa ctcgaagtta ctttgagaaa ctcgattgat
     2761 aaagaagcga caaaactaat aggccaaaaa tggtgggata atgtatacac cgacacatca
     2821 aaaagcaaac acggtgactt catacataat ataaacaaag caaaaagaag atatgagaat
     2881 gaattcaaga aaaaaaaccc atcaatggca aataccaaaa taattgcacc tcatgatgac
     2941 atcattgcac acacagattt ttacacatgg caagcggttt tgagcgatgc ttttcataca
     3001 caatcaagat ctgaagcatc aagagcctta tggcccaggc tcacctacag agtactgaag
     3061 ggattagata gaagcaaaga tgaaggcaca gccagaattg atttcttaaa cgagctgaat
     3121 gagatcagaa actacagaaa taggttatcg cataatgatt gcatatggat aaaaatacac
     3181 tctaaaaatt tgcaatctgc agtagaaaca ataagagaaa aaataaacaa aatagaagga
     3241 ctgataaaaa cgataaaccc acaggtacac ctatcattaa cgaagtgggg ttccttttat
     3301 cacgccaaaa gaatatgttc tcaaaaagag gccgaattgc atctaggcaa aggaataatc
     3361 aatagcacaa cagatgagat gaacacaatt ctagatcaac tatacgcact aactgctgac
     3421 ggaaagctaa cgggtgttgt aaaacgaaat accaacaata tcgcatttca caagttttag
     3481 atcacaaaat agaaaaggcc cgacagtttc ctgtcgagcc tcatccaaat ctcttgccat
     3541 tatcaccttt cggtggagcg tggccttaat gtcattgtga atctataaaa atttcacaat
     3601 gcattaaagc gaaagctcaa ggcttcactg ccatacatga tacatcatca tcaggaaaaa
     3661 gagcaaacta tttcccatga tcacgccaaa gcttaccatc caccatttac caatagatca
     3721 aaaaacacac aacaaaaata actaaaaacg ccgattaaac cagcattatc aaatttacat
     3781 ttaccagtta aaaaacgata aaaacaagat aacatcatgt tttatatggg aaaacaagca
     3841 gccaccaaat attgctttat ctagatttat tctaataagc gtatataaag ttaaaacaca
     3901 acaacttagt atgcgactgg aggaccaatt ggaaaccctc aacaatttgc tggtaacgct
     3961 aacttccgca aagccggagg ttttggtttc tgttgtatct ttaggtgcaa tggttttcat
     4021 gtatatgata ataaagctat ttatatctct ccttgaccga aaatggggta aaa
//
