LOCUS       NC_013451               1442 bp    DNA     circular CON 27-MAR-2024
DEFINITION  Staphylococcus aureus subsp. aureus ED98 plasmid pAVY, complete
            sequence.
ACCESSION   NC_013451
VERSION     NC_013451.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02604165
            Assembly: GCF_000024585.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus subsp. aureus ED98
  ORGANISM  Staphylococcus aureus subsp. aureus ED98
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 1442)
  AUTHORS   Lowder,B.V., Guinane,C.M., Ben Zakour,N.L., Weinert,L.A.,
            Conway-Morris,A., Cartwright,R.A., Simpson,A.J., Rambaut,A.,
            Nubel,U. and Fitzgerald,J.R.
  TITLE     Recent human-to-poultry host jump, adaptation, and pandemic spread
            of Staphylococcus aureus
  JOURNAL   Proc Natl Acad Sci U S A 106 (46), 19545-19550 (2009)
   PUBMED   19884497
REFERENCE   2  (bases 1 to 1442)
  AUTHORS   Lowder,B.V., Guinane,C.M., Ben Zakour,N.L. and Fitzgerald,J.Ross.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2009) The Roslin Institute and Centre for
            Infectious Diseases, Royal (Dick) School of Veterinary Studies,
            University of Edinburgh, The Chancellor's Building, New Royal
            Infirmary, 49 Little France Crescent, Edinburgh EH16 4SB, Scotland,
            UK
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000024585.1-RS_2024_03_27
            Annotation Date                   :: 03/27/2024 01:05:49
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,856
            CDSs (total)                      :: 2,776
            Genes (coding)                    :: 2,692
            CDSs (with protein)               :: 2,692
            Genes (RNA)                       :: 80
            rRNAs                             :: 6, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 60
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 84
            CDSs (without protein)            :: 84
            Pseudo Genes (ambiguous residues) :: 0 of 84
            Pseudo Genes (frameshifted)       :: 46 of 84
            Pseudo Genes (incomplete)         :: 38 of 84
            Pseudo Genes (internal stop)      :: 32 of 84
            Pseudo Genes (multiple problems)  :: 29 of 84
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP001782.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1442
                     /organism="Staphylococcus aureus subsp. aureus ED98"
                     /mol_type="genomic DNA"
                     /strain="ED98"
                     /sub_species="aureus"
                     /db_xref="taxon:681288"
                     /plasmid="pAVY"
     gene            288..1184
                     /locus_tag="SAAV_RS14405"
                     /old_locus_tag="SAAV_a2"
     CDS             288..1184
                     /locus_tag="SAAV_RS14405"
                     /old_locus_tag="SAAV_a2"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000532202.1"
                     /translation="MGRDKMIYLEDEKTVLDFHKNLTGGKLVVYLTYDQLNAQNLPLSD
                     SYDLKVKRYNNGVYKVCWYKNLRKKSNTNPYQKFNLEKRLKMSKEELEKLEEEQRRSHI
                     FEVKNLIKDYVLSNHFDMFWTLTFDPKKYDGEVSDELAYDLMRKWLHKMRNTHKRKSDE
                     PFNYIAIPERHKSGQIHWHMLTGYIEPNLIDSGKTFRNQKVYNCMDWKHGFTNVQKMRS
                     KSKVSSYMTKYITKDLLYSPVRKHKRKYWCSKGLALPEVYAGNYSEVADVLPLYDENGQ
                     LNPTHSNDVCDIWLFKV"
                     /name="hypothetical protein"
ORIGIN
        1 agcaagcacc aacagcaata catatagcct aaaggttcca tgtccaaaag gaaattggaa
       61 taaataaaaa agggcgtgcg cagtctgtat tagaccgtac acgctcttaa tgctattata
      121 tagctaaaat aaataaaaaa gagttacagc accctccgac caaagattgt gttgtaacga
      181 gtacttttgt taacttgtat gttactgtat tcggtttgta aaatcaagtt gataaatttg
      241 gaagtgttgt gactcttttt cagtgattgg aaaggagatt ttttattatg ggtcgagata
      301 aaatgattta tttggaagac gaaaaaactg ttttggattt ccacaaaaat ttgacgggag
      361 ggaagttggt cgtctacttg acatacgacc aacttaacgc acaaaattta cccctttctg
      421 actcttatga tttgaaggtt aaacgttata acaacggcgt ttataaagtt tgttggtaca
      481 aaaatttacg caaaaaatct aacactaatc cctaccaaaa atttaacctc gaaaaacgct
      541 taaaaatgtc taaagaagag ctggaaaaat tagaggaaga acaacgaaga agtcatattt
      601 ttgaagtaaa aaatttaatt aaggactatg tattgtctaa tcactttgat atgttttgga
      661 cgttgacgtt tgatccaaaa aaatatgacg gtgaggttag tgatgaatta gcttatgatt
      721 tgatgcgtaa gtggcttcat aaaatgagaa atactcataa gcgtaaaagt gatgagccgt
      781 ttaattatat agcgatacca gagcgtcata aaagtggcca aattcactgg catatgttga
      841 ctggttacat tgagccgaat ttgattgata gtggcaagac gtttagaaat cagaaagtat
      901 ataattgcat ggactggaag catggattta cgaacgttca aaaaatgcgg tcgaaatcaa
      961 aagtgagtag ctatatgact aaatacatca cgaaagattt actatatagt cctgttagaa
     1021 agcataagcg taagtattgg tgtagcaagg gcttagcatt gcccgaggtg tatgcaggca
     1081 attattctga agtagctgat gttttgccgc tatacgatga aaatgggcag ttaaacccga
     1141 cgcatagcaa tgatgtttgt gatatttggt tattcaaagt gtaaacgtat atgtgcttgc
     1201 gaggcgctga cggagtccat gcgctagtgg aacgtttagc aagcacatat acgcgcgata
     1261 gcgtttatat ttatatataa atatatattt atatgcctga ctgtttatat ttgcttccta
     1321 agcgttgtat aagctctttg tgttgattgt ttatgccgag aaaacttttg atatggaaaa
     1381 tggctatatg ttattacagc tagctgtaaa tgttggtgag tgattgaatg gggattagac
     1441 ca
//
