LOCUS       NC_013395               2418 bp    DNA     circular CON 10-SEP-2023
DEFINITION  Staphylococcus epidermidis plasmid pSK108, complete sequence.
ACCESSION   NC_013395
VERSION     NC_013395.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14225476
KEYWORDS    RefSeq.
SOURCE      Staphylococcus epidermidis
  ORGANISM  Staphylococcus epidermidis
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 2418)
  AUTHORS   Summers,A.O., Shearer,J. and Wireman,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-DEC-2009) Department of Microbiology, University of
            Georgia, 527 Biological Sciences Building, Athens, GA 30602, USA
  REMARK    Protein update by submitter
REFERENCE   2  (bases 1 to 2418)
  AUTHORS   Gill,J., Borman,J., Shetty,J., Hostetler,J., Durkin,S. and
            Montgomery,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-AUG-2009) J. Craig Venter Institute, 9704 Medical
            Center Drive, Rockville, MD 20850, USA
REFERENCE   3  (bases 1 to 2418)
  AUTHORS   Summers,A.O., Shearer,J. and Wireman,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JUL-2009) Department of Microbiology, University of
            Georgia, 527 Biological Sciences Building, Athens, GA 30602, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/10/2023 04:11:12
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3
            CDSs (total)                      :: 3
            Genes (coding)                    :: 2
            CDSs (with protein)               :: 2
            Genes (RNA)                       :: 0
            tRNAs                             :: 0
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 1
            CDSs (without protein)            :: 1
            Pseudo Genes (ambiguous residues) :: 0 of 1
            Pseudo Genes (frameshifted)       :: 0 of 1
            Pseudo Genes (incomplete)         :: 1 of 1
            Pseudo Genes (internal stop)      :: 0 of 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            GQ900464.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2418
                     /organism="Staphylococcus epidermidis"
                     /mol_type="genomic DNA"
                     /strain="SK356"
                     /db_xref="taxon:1282"
                     /plasmid="pSK108"
                     /geo_loc_name="Australia: Melbourne"
                     /collection_date="1980"
                     /identified_by="Ron Skurray, Neville Firth, Slade Jensen:
                     School of Biological Sciences, University of Sydney,
                     Sydney, AU"
                     /note="QacC; human clinical isolate"
     gene            complement(324..1328)
                     /locus_tag="HHF77_RS00005"
                     /old_locus_tag="SAP109C_001"
     CDS             complement(324..1328)
                     /locus_tag="HHF77_RS00005"
                     /old_locus_tag="SAP109C_001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020368559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_001199882.1"
                     /translation="MQYNTTRCIDENQDNETLKDMTKSGKQRPWREKKIDNVSYADILE
                     ILKIKKAFNVKQCGNVLEFKPTDEGYLKLHKTWFCKSKLCPVCNWRRAMKNSYQAQKVI
                     EEVVKEKPKARWLFLTLSTKNAIDGDTLEQSLKHLTKAFDRLSRYKKVKQNLVGFLRST
                     EVTVNKNDGSYNQHMHVLLCVENSYFKNKANYITQEEWVNLWQKALQVNYRPVANIKAI
                     KPNQKGDKDIQAAIKETSKYSVKSSDFLTDDDERNQEIVNDLEKGLYRKRMLSYGGLLK
                     QKHKILNLDDAEDGNLINTSDEDKTTDEEEKAHSITAIWNFEKQNYYLKDLKR"
                     /name="protein rep"
     gene            1650..>1745
                     /locus_tag="HHF77_RS00020"
                     /pseudo=""
     CDS             1650..>1745
                     /locus_tag="HHF77_RS00020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001146389.1"
                     /GO_component="GO:0016020 - membrane [Evidence IEA]"
                     /GO_function="GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="SMR family transporter"
                     /name="SMR family transporter"
     gene            1792..2115
                     /gene="qacC"
                     /locus_tag="HHF77_RS00015"
                     /old_locus_tag="SAP109C_003"
     ARG             1793..2112
                     /name="qacC"
                     /gene="qacC"
                     /gene_name="quaternary ammonium compound efflux SMR
                     transporter QacC"
                     /tool="amrfinderplus"
                     /drug_class="QUATERNARY AMMONIUM"
                     /identity="100.0"
                     /coverage="100.0"
     ARG             1793..2115
                     /name="qacJ"
                     /gene="qacJ"
                     /gene_name="small multidrug resistance (SMR) antibiotic
                     efflux pump"
                     /tool="rgi"
                     /drug_class="disinfecting agents and antiseptics"
                     /identity="71.96"
                     /coverage="100.0"
     Typing          complement(325..1328)
                     /name="rep_cluster_1017"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 tttaaggggg cattttaaag attcaggggt aaatcatata gttttatacc taaaagtcta
       61 tatacgcttt taaaacgcaa atatgagcca aataaatata tcttaatttc acaaacaaaa
      121 atttgagcaa aaccagtgac taatttttta gacactgccc agttatatgc aaattaaaaa
      181 tttagcaaac tgggcagaaa aaaataaaca ctgcccattt acatgcaaac ttaaaagtta
      241 acatgaaaac tggtcaacca tgccggttga acgctatagt tcccgcaggg gcaaaaagac
      301 ataaaaaaac gctagctttt tagctaacgt ttcaaatctt ttaaataata attttgtttt
      361 tcaaaattcc aaattgccgt aattgaatgt gctttttctt cttcgtctgt tgttttatct
      421 tcgtcacttg tattaatcaa attgccatct tcggcatcat ctaaatttaa aatcttatgt
      481 ttttgtttaa gcaaaccacc ataactcaac atacgttttc gatataaacc tttttctaaa
      541 tcattcacga tttcttgatt tctttcatca tcatcagtta aaaaatcaga tgacttaacc
      601 gaatatttag aggtttcttt gatagctgct tgaatatctt tatcgccttt ttgatttggt
      661 ttgatcgctt taatatttgc tacgggtcga taatttactt gtaatgcttt ttgccataaa
      721 ttaacccatt cttcttgagt tatataatta gctttattct taaaataact attttcaaca
      781 cataataaaa catgcatatg ttgattataa ctaccatcat ttttattaac tgttacttcc
      841 gttgaacgca aaaacccaac aagattttgc ttcacttttt tatatctact taacctatca
      901 aatgctttcg ttaaatgttt caaactttgt tctaaagtat ccccatctat cgcatttttc
      961 gttgaaagtg ttaaaaataa ccaacgcgct tttggttttt ctttaacaac ttcttcaatc
     1021 actttttgag cttgataact atttttcata gcacgcctcc aattacaaac tgggcagagt
     1081 ttcgacttac aaaaccatgt cttatgtaac ttcaaataac cttcatcagt cggcttgaac
     1141 tctaagacgt taccacattg ttttacatta aaagcctttt ttatttttaa aatttccagt
     1201 atatctgcat aacttacatt atctatcttc ttttctctcc atgggcgttg tttcccactt
     1261 ttcgtcatat ctttaagtgt ttcgttatct tgattttcgt ctatacatct agtagtatta
     1321 tattgcatat aaagagacct ccagtagttg tttattgagt agacgcttta atcatactac
     1381 tggggttttt ttatgtcaaa aattcctttc aacaagaaaa atagctataa tcccttacat
     1441 accaaggatt acagctataa ttttaaaatc gagttatttc tatatagtat caagacaaga
     1501 agaaactcgt tttcaactcg tttcaaaaac ctttcaaaaa ccatcaatcc acaaaaatac
     1561 cacgcgaatg acactcaaaa tacaagacta caattaaaaa atacttagaa taaaattaaa
     1621 taaaatacga aaattaaaag gagttaaaaa tgccttatat ttatttaata atagccataa
     1681 gtactgaagt tattggaagt gcatttctta aatcttcaga aggcttttca aaatttatac
     1741 catcctttag aataaaatta aataaaatac gaaaattaaa aggagttaaa aatgccttat
     1801 atttatttaa taatagccat aagtactgaa gttattggaa gtgcatttct taaatcttca
     1861 gaaggctttt caaaatttat accatcctta ggaacaataa tttcatttgg aatttgtttc
     1921 tattttttaa gtaaaacaat gcaacaccta ccactaaata taacttatgc aacttgggcg
     1981 ggactaggtt tagtcttaac aaccgtagtc tcaataatta ttttcaaaga acaaataaat
     2041 ctaataacta tagtatctat agttttaatc atagtcggcg tagtttcgtt aaacattttc
     2101 ggaacatcgc attaattgct ttattccaat tgctttattg acgttgagcc tcggaaccct
     2161 taacaatccc aaaacttgtc gaatggtcgg cttaatagct cacgctatgc cgacattcgt
     2221 ctgcaagttt agttaagggt tcttctcaac gcacaataaa ttttctcggc ataaatgcgt
     2281 gttcttgtta taatatagac atcacattta gggtgcttat taaaagtagt tttttataat
     2341 ctacttcgca aaagcaaata aaaagccaat ccattttatc tgggttggct ttttattttt
     2401 atatgccttt atttgaat
//
