LOCUS       NC_013375               3011 bp    DNA     circular CON 10-SEP-2023
DEFINITION  Staphylococcus aureus SK6575 plasmid SAP104A, complete sequence.
ACCESSION   NC_013375
VERSION     NC_013375.2
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14225490
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus SK6575
  ORGANISM  Staphylococcus aureus SK6575
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 3011)
  AUTHORS   Summers,A.O., Shearer,J. and Wireman,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-DEC-2009) Department of Microbiology, University of
            Georgia, 527 Biological Sciences Building, Athens, GA 30602, USA
  REMARK    Sequence and protein update by submitter
REFERENCE   2  (bases 1 to 3011)
  AUTHORS   Gill,J., Borman,J., Shetty,J., Hostetler,J., Durkin,S. and
            Montgomery,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-AUG-2009) J. Craig Venter Institute, 9704 Medical
            Center Drive, Rockville, MD 20850, USA
REFERENCE   3  (bases 1 to 3011)
  AUTHORS   Summers,A.O., Shearer,J. and Wireman,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JUL-2009) Department of Microbiology, University of
            Georgia, 527 Biological Sciences Building, Athens, GA 30602, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Date              :: 09/10/2023 04:16:43
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.6
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 2
            CDSs (total)                 :: 2
            Genes (coding)               :: 2
            CDSs (with protein)          :: 2
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            GQ900450.2.
            On Oct 26, 2012 this sequence version replaced NC_013375.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3011
                     /organism="Staphylococcus aureus SK6575"
                     /mol_type="genomic DNA"
                     /strain="SK6575"
                     /db_xref="taxon:903521"
                     /plasmid="SAP104A"
                     /geo_loc_name="Thailand: Bangkok"
                     /collection_date="1998"
                     /identified_by="Ron Skurray, Neville Firth, Slade Jensen:
                     School of Biological Sciences, University of Sydney,
                     Sydney, AU"
                     /note="human clinical isolate"
     gene            complement(1..996)
                     /locus_tag="HHF88_RS00005"
                     /old_locus_tag="SAP104A_001"
     CDS             complement(1..996)
                     /locus_tag="HHF88_RS00005"
                     /old_locus_tag="SAP104A_001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001199895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_001199895.1"
                     /translation="MQYNTTRSITENQDNKTLKDMTKSGKQRPWREKKIDNVSYADILE
                     ILKIKKAYNVKQCGNVLEFKPTDEGYLKLHKTWFCKSKLCPVCNWRRAMKNSYQAQKVI
                     EEVIKEKPKARWLFLTLSTKNAIDGDTLEQSLKHLTKAFDRLSRYKKVKQNLVGFMRST
                     EVTVNKNDGSYNQHMHVLLCVENAYFRKKENYITQEEWVNLWQKALQVDYRPVANIKAI
                     KPNQKGDKDIESAIKETSKYSVKSSDFLTDNDEKNQEIVSDLEKGLYRKRMLSYGGLLK
                     QKHKILNLDDAEDGNLINTSDEDKITDEEAKAHSITAIWNFEKQNYYLRH"
                     /name="protein rep"
     gene            1448..2029
                     /locus_tag="HHF88_RS00010"
                     /old_locus_tag="SAP104A_003"
     CDS             1448..2029
                     /locus_tag="HHF88_RS00010"
                     /old_locus_tag="SAP104A_003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000991701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000991701.1"
                     /translation="MNAIQKSVSLRKVLVISLSFLTILSMVLNFNFKEAQAQNKNNIAD
                     KNIETLNEKEIEKELDYIYGKIIVLDKDGTAKDVNLENAKSRYGYVPEGFQKLKNDIEN
                     KKKNSSISPRAVGGNYKNSNDCFYSEVLNSYGELLTGNIIAAVFDDVKAKNIKSAAKKL
                     ARIGIKGNLAGIAATMVSKDVQCTLKYGWF"
                     /name="hypothetical protein"
     Typing          complement(2778..2942)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="99.398"
                     /coverage="100.0"
                     /evalue="1.13e-79"
     Typing          complement(2..996)
                     /name="rep_cluster_1017"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="96.687"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ctaatgtctt aaataataat tttgtttttc aaaattccaa attgccgtaa ttgaatgtgc
       61 ttttgcttct tcatctgtta ttttatcttc atcacttgta ttaattaaat taccatcttc
      121 agcatcgtct aagtttaaaa ttttatgctt ttgtttaagc aatccaccat aacttaacat
      181 acgttttcga tataaacctt tttctaaatc acttacaatt tcttgatttt tttcgtcatt
      241 gtcagttaaa aaatcagatg acttaaccga atattttgat gtctctttga ttgccgattc
      301 aatatcttta tcgccttttt gattaggttt aattgcttta atatttgcaa caggtcgata
      361 atcaacttgt aatgcttttt gccataaatt aacccattct tcttgagtta tataattctc
      421 tttttttcta aaatatgcat tttcaacaca taacaaaacg tgcatatgct gattataact
      481 accatcattt ttattaacgg taacttctgt tgaacgcata aatccaacaa gattttgttt
      541 aaccttttta tatctactca acctatcaaa tgctttagtt agatgcttca aactttgttc
      601 taaagtatct ccatctatcg catttttggt tgaaagtgtt aaaaacaacc aacgtgcttt
      661 tggcttttcc ttaattactt cttcaatcac tttttgagct tgataactat ttttcatagc
      721 acgcctccaa ttacaaactg gacatagctt tgatttacaa aaccacgtct tatgtaattt
      781 caaataacct tcatcggtcg gcttgaattc taagacgtta ccacattgtt ttacgttata
      841 agcctttttt atttttaaaa tttcaagtat atctgcatag cttacattat ctattttctt
      901 ttctctccat gggcgttgtt tcccactttt cgtcatatct tttaacgttt tattatcttg
      961 attttcggtt atacttctag tagtattata ttgcatataa aaagaccccc agtattattt
     1021 aagattcgac accttaataa tataactggg gttttttatt gtcaaatttt cctttcacgc
     1081 acaaaaacac gtttaaacgc tgtaatatca acagttacag ctatatatat aaaatcgagt
     1141 tatttctata tagtatcaag acaagaagaa actcgttttc aactcgtttc aaaaacaatc
     1201 tatttctttt tctctttata gccctctaaa cctaaataaa tcaatgtgaa aaccaacgaa
     1261 taaataaagc tttctaaaaa gtcaaaagga ttattaaata aaatcgaatt aacaaaatta
     1321 aatattaaaa atacggacaa taaaacaatt aaaaaataaa taaacttatt catattaaac
     1381 tcctttgttt ttatatgtta atattatatt ggattcattt aaataacaaa acaagggggc
     1441 atttataatg aatgcaattc aaaaaagtgt atcactaaga aaagttttag taatatcttt
     1501 aagtttttta actatacttt caatggtctt gaattttaat tttaaagaag ctcaagccca
     1561 aaacaaaaac aacatcgcag ataaaaacat tgaaacttta aacgaaaaag aaatcgaaaa
     1621 agaactagac tacatatatg gcaaaattat tgttttagat aaagacggaa ccgctaaaga
     1681 tgttaatcta gaaaatgcca aatctagata tggatatgtt cctgaaggtt tccaaaaact
     1741 aaagaacgac atagagaata aaaagaaaaa tagctcaata tcacctagag cagttggtgg
     1801 aaactacaaa aatagtaatg actgtttcta ttctgaagtt ttaaactcat atggagaact
     1861 tttaaccggt aatataatcg cagcagtttt tgatgatgta aaagccaaaa acataaagag
     1921 tgcagcaaaa aaattagcca gaattggcat aaaaggaaat ttagctggaa ttgcagctac
     1981 tatggtttca aaggatgtac aatgtactct gaaatacgga tggttctaaa tatataattt
     2041 attccaattg ctttattgac gttgagcctc ggaaccctta acaatcccta aacttgtcga
     2101 atcgtcggct taatagctca cgctatgccg acattcgtct tcaagtttag ttaagggttc
     2161 ttctcaacat caataaattt tctcggcata aatgcatgtt tgattatgcg tgtaactatc
     2221 ccttaaataa aacattaatt gtgcactgat ttactaatta ttatcccttg ctttcattca
     2281 cactataatc aacaccttaa ttctaaacat ctgaagtaat cataattttt aaacctaata
     2341 aaattcgtga ctatcttagt taaactctgt ttaattaaga ttttttattt ttcgttatcc
     2401 aagaggcgca tttacatact taaaaatgcg tcgagctaaa accaaaattt acgtgtaata
     2461 atcgaatata cttattttgc attttaaggg ggtatttaga acgaacttta aaaatatata
     2521 gttttatacc tgtattatct tatttgtttc ttaaaacgca aatatgagcc aaataaatat
     2581 attctgattt tataatcaaa aattttttat aatcaaaaat tcgatcaaac ccagtgtcga
     2641 tttttcggac actgcccatt tacatgcaaa ttaaaaatta gcataaaatc ctttaaaact
     2701 tcccccatgt ttttctaaat tcctgcaggg cgctttttat caaaaatcga gaatttttaa
     2761 tttttctcta agaactccgt aagagcataa ggagaatttg ctatcattca aaaatgatag
     2821 gtctggcaaa gccagacatt ccaagggttt taagtaattt taaagtgata tcataaaaag
     2881 ctgtagtgtc acacttttgt gacacaatat attgcgtttg tcacagtttt gtgacactac
     2941 atacagcatt tgtcacaaaa ataagacagt acttttttac aaaaaatcaa taaaaaagac
     3001 atcagtcatc a
//
