LOCUS       NC_013346               2396 bp    DNA     circular CON 10-SEP-2023
DEFINITION  Staphylococcus aureus plasmid SAP087A, complete sequence.
ACCESSION   NC_013346
VERSION     NC_013346.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14225440
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 2396)
  AUTHORS   Summers,A.O., Shearer,J. and Wireman,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-DEC-2009) Department of Microbiology, University of
            Georgia, 527 Biological Sciences Building, Athens, GA 30602, USA
  REMARK    Protein update by submitter
REFERENCE   2  (bases 1 to 2396)
  AUTHORS   Gill,J., Borman,J., Shetty,J., Hostetler,J., Durkin,S. and
            Montgomery,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-AUG-2009) J. Craig Venter Institute, 9704 Medical
            Center Drive, Rockville, MD 20850, USA
REFERENCE   3  (bases 1 to 2396)
  AUTHORS   Summers,A.O., Shearer,J. and Wireman,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JUL-2009) Department of Microbiology, University of
            Georgia, 527 Biological Sciences Building, Athens, GA 30602, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Date              :: 09/10/2023 04:10:54
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.6
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 3
            CDSs (total)                 :: 3
            Genes (coding)               :: 3
            CDSs (with protein)          :: 3
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            GQ900439.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2396
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="SK1020"
                     /db_xref="taxon:1280"
                     /plasmid="SAP087A"
                     /geo_loc_name="Australia: Melbourne"
                     /collection_date="1947"
                     /identified_by="Ron Skurray, Neville Firth, Slade Jensen:
                     School of Biological Sciences, University of Sydney,
                     Sydney, AU"
                     /note="AsaCdHg; human clinical isolate"
     gene            join(1920..2396,1..450)
                     /locus_tag="HHF51_RS00005"
                     /old_locus_tag="SAP087A_001"
     CDS             join(1920..2396,1..450)
                     /locus_tag="HHF51_RS00005"
                     /old_locus_tag="SAP087A_001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002499696.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_031771843.1"
                     /translation="MERYESKKVRSEEFRDLVKSLVSDSYYWLIEECGTFLSFVGDKEL
                     NKIKMHRGNFCKHRFCPMCAWRKARKDALELSLMMQDIKISYDKAFIFLTLTTPNVVAE
                     RLGDEIKRYNKSFDKLFKRKVVKRVVKGYVRKLEITYNEKRDDYHPHFHVLIVVNKSYF
                     TDVKAYLNQKEWLRLWREATGISEITQVDVRRVKEQNSNELYEMAKYTGKDSDYLSNEK
                     VFKVFYESLKGKRAFAYGGLFKEVRKKLKNGDLDYLKEVDPTKYIYQIFCGWNQMHYYA
                     SELRLMSEEMQKEVNHQMINELDDKYL"
                     /name="protein rep"
     gene            946..1128
                     /locus_tag="HHF51_RS00010"
                     /old_locus_tag="SAP087A_002"
     CDS             946..1128
                     /locus_tag="HHF51_RS00010"
                     /old_locus_tag="SAP087A_002"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000877306.1"
                     /translation="MKYRIIAALFFLMLLLIYVFKIAPFLNTDSQIVNLVVVLIIFFIG
                     ALLGWISRKFDKNSK"
                     /name="hypothetical protein"
     gene            1178..1621
                     /locus_tag="HHF51_RS00015"
                     /old_locus_tag="SAP087A_003"
     CDS             1178..1621
                     /locus_tag="HHF51_RS00015"
                     /old_locus_tag="SAP087A_003"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_012816707.1"
                     /translation="MYKKILTLSILLVMIFTVVPVHNEVEAKPKKGSVVTINKKQYIYQ
                     GTVKKYYPAKYCKLVNKYAKNSQSFTNLVAGTSGFATFAKKAGYAGVLASSLYIANLGV
                     QNNTTIYKNAARKGTGVQVSYDLYVPKTGHNYGLTRNTKVVYK"
                     /name="hypothetical protein"
     Typing          2..450
                     /name="rep_cluster_1130"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 aaatcatatt ttacggatgt aaaagcttat ttgaatcaaa aagagtggtt gcgtttatgg
       61 cgtgaggcaa caggaatttc agaaattacg caagtagatg tgcgtcgggt caaagagcaa
      121 aatagtaatg agttgtatga aatggctaaa tatacaggta aagatagtga ttatttatct
      181 aatgaaaaag tgtttaaagt tttttatgag tctttaaaag gtaaaagggc atttgcatat
      241 ggtggattat ttaaagaagt tagaaaaaag cttaaaaatg gcgatttaga ttatttaaaa
      301 gaggttgatc caacaaaata catatatcaa attttttgtg gttggaatca aatgcattat
      361 tatgcgagtg aattgagatt gatgagtgaa gaaatgcaaa aagaagtgaa tcatcaaatg
      421 ataaatgaat tagatgataa atatttataa gagctttatt tttcaatttt atatataaag
      481 aattgcatat gtaatttagt gtagtctgag gtgctgacag agtcagcaag gcggagccgt
      541 ccagcggagc gttcagacaa gtaatataaa atgtgtaggc ggagttttag aattaagtaa
      601 aagaatttgt ttttgaatgt atttaaagcc attaaaaagt attaaactaa ttttggacgt
      661 ataaatgtat cgattagtta ttttgtttta aaatatgctt aaaatgcgaa ataatcatat
      721 attcacattt atgccgagaa aacattttga aaaagaaaaa agctatatga tatttcaact
      781 tgttgaaaat gttggtgggg tttgaattgg gattgattcc aagaaaacac caacagaaaa
      841 tcatatagct taaagtttct gttcaaaatg gaaattggaa taaatttatg gtttattgta
      901 taagaatgaa tatagaattt attaagaaag attaggagga tttatatgaa atatagaatt
      961 atagcggctt tgtttttttt gatgttgtta ttaatatatg tatttaaaat agctcctttt
     1021 ttaaatactg atagtcaaat tgtaaattta gttgttgtgt taattatttt ctttataggt
     1081 gcattattag ggtggattag tcgtaaattt gataaaaact ccaaataaat atatttttgt
     1141 gttatattaa tacaaaaata tattaggggt gtattttatg tataaaaaaa tattaacttt
     1201 atctattttg cttgttatga tttttacagt tgttcctgtt cataatgaag ttgaagctaa
     1261 acctaaaaaa ggttctgttg taacgattaa taaaaagcaa tatatatatc aagggactgt
     1321 aaaaaaatat tatcctgcaa aatattgtaa actggttaat aagtatgcta agaattccca
     1381 gtcttttaca aatttagtgg ctggtactag cggttttgcg acttttgcaa aaaaagctgg
     1441 ttatgctggt gtgttagctt cgagtttata tattgctaat ttaggtgttc agaataatac
     1501 tacgatttac aaaaatgctg caagaaaagg tacgggtgtg caagttagtt atgatttata
     1561 tgttcctaaa acaggacata attatggatt aacacgtaat acaaaagttg tatataaata
     1621 aaaaaatgga gatgtttttc atctccattt tttattttct tctatcttga taatataggt
     1681 aacaactcac ggatgtctgt ataggcatct aacccttgat aataaaggaa aaaacataga
     1741 aaaacttgct ttatccagca tattattcta gaattttagg tgtctaatca aaaattctaa
     1801 atattggagg tataaagcaa gttttttgtt cgtaatattt ttgtatccaa atttatagcg
     1861 tcttaaaatt tgttaattac atgacacata ataatataaa caatcgtaaa atacaagata
     1921 ttgagagata tgagagtaaa aaggttagaa gtgaagagtt tagagattta gtaaaaagtt
     1981 tagtatctga ttcgtattat tggttaattg aggaatgtgg gacattctta tcgtttgttg
     2041 gtgataaaga attaaacaaa attaaaatgc atcgtgggaa tttttgtaag catagatttt
     2101 gtccaatgtg tgcatggaga aaagcgagaa aagatgcttt ggaattatct ttaatgatgc
     2161 aggatataaa gattagttat gataaagcat ttatcttttt gacgcttaca acaccgaacg
     2221 tagtagctga aagattggga gatgagatta aaagatataa taaatctttt gataaattat
     2281 ttaaacgaaa agttgtaaaa agagtagtaa aaggttatgt tcgaaaatta gaaataactt
     2341 ataatgagaa acgagatgat tatcacccac attttcatgt gcttattgtt gttaat
//
