LOCUS       NC_013311               4439 bp    DNA     circular CON 10-SEP-2023
DEFINITION  Staphylococcus aureus plasmid SAP094A, complete sequence.
ACCESSION   NC_013311
VERSION     NC_013311.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14225436
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 4439)
  AUTHORS   Summers,A.O., Shearer,J. and Wireman,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-DEC-2009) Department of Microbiology, University of
            Georgia, 527 Biological Sciences Building, Athens, GA 30602, USA
  REMARK    Protein update by submitter
REFERENCE   2  (bases 1 to 4439)
  AUTHORS   Gill,J., Borman,J., Shetty,J., Hostetler,J., Durkin,S. and
            Montgomery,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-AUG-2009) J. Craig Venter Institute, 9704 Medical
            Center Drive, Rockville, MD 20850, USA
REFERENCE   3  (bases 1 to 4439)
  AUTHORS   Summers,A.O., Shearer,J. and Wireman,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JUL-2009) Department of Microbiology, University of
            Georgia, 527 Biological Sciences Building, Athens, GA 30602, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Date              :: 09/10/2023 04:13:29
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.6
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 3
            CDSs (total)                 :: 3
            Genes (coding)               :: 3
            CDSs (with protein)          :: 3
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            GQ900443.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4439
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="SK449"
                     /db_xref="taxon:1280"
                     /plasmid="SAP094A"
                     /geo_loc_name="Australia: Melbourne"
                     /collection_date="1981"
                     /identified_by="Ron Skurray, Neville Firth, Slade Jensen:
                     School of Biological Sciences, University of Sydney,
                     Sydney, AU"
                     /note="Tc; human clinical isolate"
     gene            join(4297..4439,1..802)
                     /locus_tag="HHF47_RS00005"
                     /old_locus_tag="SAP094A_001"
     CDS             join(4297..4439,1..802)
                     /locus_tag="HHF47_RS00005"
                     /old_locus_tag="SAP094A_001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000277654.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA];
                     GO:0003916 - DNA topoisomerase activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation factor domain-containing
                     protein"
                     /protein_id="WP_000277654.1"
                     /translation="MYKNNHANHSNHLENHDLDNFSKTGYSNSRLDAHTVCISDPKLSF
                     DAMTIVGNLNRDNAQALSKFMSVEPQIRLWDILQTKFKAKALQEKVYIEYDKVKADSWD
                     RRNMRIEFNPNKLTRDEMIWLKQNIISYMEDDGFTRLDLAFDFEDDLSDYYAMSDKAVK
                     KTIFYGRNGKPETKYFGVRDSNRFIRIYNKKQERKDNADAEVMSEHLWRVEIELKRDMV
                     DYWNDCFSDLHILQPDWKTIQRTADRAIVFMLLSDEEEWGKLHRNSRTKYKNLIKEISP
                     VDLTDLMKSTLKANEKQLQKQIDFWQHEFKFWK"
                     /name="replication initiation factor domain-containing
                     protein"
     gene            964..2343
                     /gene="tet(K)"
                     /locus_tag="HHF47_RS00010"
                     /old_locus_tag="SAP094A_002"
     ARG             965..2340
                     /name="tet(K)"
                     /gene="tet(K)"
                     /gene_name="tetracycline efflux MFS transporter Tet(K)"
                     /tool="amrfinderplus"
                     /drug_class="TETRACYCLINE"
                     /identity="100.0"
                     /coverage="100.0"
     gene            2529..3770
                     /gene="mobV"
                     /locus_tag="HHF47_RS00015"
                     /old_locus_tag="SAP094A_003"
     CDS             2529..3770
                     /gene="mobV"
                     /locus_tag="HHF47_RS00015"
                     /old_locus_tag="SAP094A_003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010889940.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobV family relaxase"
                     /protein_id="WP_000122374.1"
                     /translation="MSYSIVRVSKVKSGTNTTGIQKHVQRENNNYENEDIDHSKTYLNY
                     DLVNANKQNFNNLIDEKIEQNYTGKRKIRTDAIKHIDGLITSDNDFFDNQTPEDTKQFF
                     EYAKEFLEQEYGKDNLLYATVHMDEKTPHMHYGVVPITDDGRLSAKEVVGNKKALTAFQ
                     DRFNEHVKQRGYDLERGQSRQVTNAKHEQISQYKQKTEYHKQEYERESQKTDHIKQKND
                     KLMQEYQKSLNTLKKPINVPYEQETEKVGGLFSKEIQETGNVVISQKDFNEFQKQIKAA
                     QDISEDYEYIKSGRALDDKDKEIREKDDLLNKAVERIENADDNFNQLYENAKPLKENIE
                     IALKLLKILLKELERVLGRNTFAERVNKLTEDEPKLNGLAGNLDKKMNPELYSEQEQQQ
                     EQQKNQKRDRGMHL"
                     /name="mobV"
     Typing          2..802
                     /name="rep_cluster_1118"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          2530..3767
                     /name="MOBV"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gacgatcgtt ggaaatctca accgagacaa cgctcaagcc ctttctaaat ttatgagtgt
       61 agagccccaa ataagacttt gggatattct tcaaacaaag tttaaagcta aagcacttca
      121 agaaaaagtt tatattgaat atgacaaagt gaaagcagat agttgggata gacgtaatat
      181 gcgtattgaa tttaatccaa acaaacttac acgagatgaa atgatttggt taaaacaaaa
      241 tataataagc tacatggaag atgacggttt tacaagatta gatttagcct ttgattttga
      301 agatgatttg agtgactact atgcaatgtc tgataaagca gttaagaaaa ctatttttta
      361 tggtcgtaat ggtaagccag aaacaaaata ttttggcgtg agagatagta atagatttat
      421 tagaatttat aataaaaagc aagaacgtaa agataatgca gatgctgaag ttatgtctga
      481 acatttatgg cgtgtagaaa tcgaacttaa aagagatatg gtggattact ggaatgattg
      541 ctttagtgat ttacatatct tgcaaccaga ttggaaaact atccaacgca ctgcggatag
      601 agcaatagtt tttatgttat tgagtgatga agaagaatgg ggaaagcttc acagaaattc
      661 tagaacaaaa tataagaatt tgataaaaga aatttcgcca gtcgatttaa cggacttaat
      721 gaaatcgact ttaaaagcga acgaaaaaca attgcaaaaa caaatcgatt tttggcaaca
      781 tgaatttaaa ttttggaaat agtgtacata ttaatattac tgaacaaaaa tgatatattt
      841 aaactattct aatttaggag gattttttta tgaagtgtct atttaaaaat ttggggaatt
      901 tatatgaggt gaaagaataa tttaccccta taaactttag tcacctcaag taaagaggta
      961 aaattgttta gtttatataa aaaatttaaa ggtttgtttt atagcgtttt attttggctt
     1021 tgtattcttt cattttttag tgtattaaat gaaatggttt taaatgtttc tttacctgat
     1081 attgcaaatc attttaatac tactcctgga attacaaact gggtaaacac tgcatatatg
     1141 ttaacttttt cgataggaac agcagtatat ggaaaattat ctgattatat aaatataaaa
     1201 aaattgttaa ttattggtat tagtttgagc tgtcttggtt cattgattgc ttttattggt
     1261 cacaatcact tttttatttt gatttttggt aggttagtac aaggagtagg atctgctgca
     1321 ttcccttcac tgattatggt ggttgtagct agaaatatta caagaaaaaa acaaggcaaa
     1381 gcctttggtt ttataggatc aattgtagct ttaggtgaag ggttaggtcc ttcaataggg
     1441 ggaataatag cacattatat tcattggtct tacctactta tacttcctat gattacaata
     1501 gtaactatac cttttcttat taaagtaatg gtacctggta aatcaacaaa aaatacatta
     1561 gatatcgtag gtattgtttt aatgtctata agtattatat gttttatgtt atttacgaca
     1621 aattataatt ggactttttt aatactcttc acaatctttt ttgtgatttt tattaaacat
     1681 atttcaagag tttctaaccc ttttattaat cctaaactag ggaaaaacat tccgtttatg
     1741 cttggtttgt tttctggtgg gctaatattt tctatagtag ctggttttat atcaatggtg
     1801 ccttatatga tgaaaactat ttatcatgta aatgtagcga caataggtaa tagtgttatt
     1861 tttcctggaa ccatgagtgt tattgttttt ggttattttg gtggtttttt agtggataga
     1921 aaaggatcat tatttgtttt tattttagga tcattgtcta tctctataag ttttttaact
     1981 attgcatttt ttgttgagtt tagtatgtgg ttgactactt ttatgtttat atttgttatg
     2041 ggcggattat cttttactaa aacagttata tcaaaaatag tatcaagtag tctttctgaa
     2101 gaagaagttg cttctggaat gagtttgcta aatttcacaa gttttttatc agagggaaca
     2161 ggtatagcaa ttgtaggagg tttattgtca ctacaattga ttaatcgtaa actagttctg
     2221 gaatttataa attattcttc tggagtgtat agtaatattc ttgtagccat ggctatcctt
     2281 attattttat gttgtctttt gacgattatt gtatttaaac gttctgaaaa gcagtttgaa
     2341 tagttatatt atattttggt ttagaactat gagtggctag cattttgcca ctcatttttt
     2401 gcgttagcaa aaacaggttt aagcctcgca gagcacacgt attaacgact tattaaaaat
     2461 aagtctagtg tgttagactt aaactattaa atacacatga aacctttgtg cttaggagtg
     2521 atttttatat gtcttattcc attgttagag tttcaaaagt taaatctgga acaaatacaa
     2581 cgggcataca aaaacatgtt caaagagaaa ataataatta tgaaaatgaa gatatagacc
     2641 atagtaaaac ttacttaaat tatgatttgg taaatgctaa taaacagaat tttaataact
     2701 tgattgatga aaaaatcgaa cagaattata caggcaaaag aaaaattaga acagacgcga
     2761 ttaaacacat tgatggttta attacatcag acaatgattt ctttgataat caaacgccag
     2821 aagatacaaa gcagtttttt gaatatgcta aagagttttt agaacaagaa tacggtaaag
     2881 ataatttatt atatgcaaca gttcacatgg acgaaaaaac accacatatg cattatggcg
     2941 ttgttccaat aactgatgat ggtcgtttaa gtgctaaaga agttgtaggt aataaaaaag
     3001 ctttaacagc gtttcaagat agatttaatg agcatgttaa acaacgagga tatgatttag
     3061 aacgtgggca atcaagacaa gtaacaaatg ctaaacatga gcaaataagt cagtataaac
     3121 aaaaaacaga atatcataag caagaatatg aacgtgagag ccaaaaaaca gaccatataa
     3181 agcaaaagaa cgataaatta atgcaagagt accaaaaatc gttaaatacg cttaaaaagc
     3241 ctataaatgt tccgtatgag caagaaactg aaaaagtagg tggtttattt agcaaagaaa
     3301 tacaagaaac tggaaatgtt gtaataagcc aaaaagattt caatgaattt cagaaacaga
     3361 taaaagctgc tcaagatatt tcggaagatt acgagtatat aaagtctggt agagccttag
     3421 atgataaaga taaggaaata cgagagaaag atgatttatt aaataaagca gttgagcgta
     3481 ttgaaaacgc agacgataat tttaaccaac tttacgaaaa tgcaaagcca cttaaagaga
     3541 atatagaaat agcgttaaag cttttaaaaa tcttactaaa agagttagaa cgagttttag
     3601 gaagaaatac ctttgcggaa agagttaata agttaacaga agatgaacca aaactaaatg
     3661 gtttagcagg aaacttagat aaaaaaatga atccagaatt atattcagaa caggaacagc
     3721 aacaagaaca acaaaagaat caaaaacgag atagaggtat gcacttatag aacatgcatt
     3781 tatgccgaga aaacttattg gttggaatgg gctatgtgtt agctaacttg ttagcgagtt
     3841 ggttggactt gaattgggat taatcccaag aaagtaccaa ctcaacaaca cataaagccc
     3901 tgtaggttcc gaccaataag gaaattggaa taaagcaata aaaggagttg aagaaatgaa
     3961 attcagagaa gcctttgaga attttataac aagtaagtat gtacttggtg ttttagtagt
     4021 tttaactgtt taccagataa tacaaatgct taaataaaaa aagacttgat ctgattagac
     4081 caagtctttt gatagtgtta tattaataac aaaataaaaa ggagtcgctc acgccctgat
     4141 caaagtttgt gaacgacatc attcaaagaa aaaaacactg agttgttttt ataatcttgt
     4201 atatttagat attaaacgat atttaaatat acatcaagat atatatttgg gtgagcgatt
     4261 ccttaaacga aattgagatt aaggagtcga ttttttatgt ataaaaacaa tcatgcaaat
     4321 cattcaaatc atttggaaaa tcacgattta gacaattttt ctaaaaccgg ctactctaat
     4381 agccggttgg acgcacatac tgtgtgcata tctgatccaa aattaagttt tgatgcaat
//
