LOCUS       NC_013309               4439 bp    DNA     circular CON 10-SEP-2023
DEFINITION  Staphylococcus aureus plasmid SAP093A, complete sequence.
ACCESSION   NC_013309
VERSION     NC_013309.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14225438
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 4439)
  AUTHORS   Summers,A.O., Shearer,J. and Wireman,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-DEC-2009) Department of Microbiology, University of
            Georgia, 527 Biological Sciences Building, Athens, GA 30602, USA
  REMARK    Protein update by submitter
REFERENCE   2  (bases 1 to 4439)
  AUTHORS   Gill,J., Borman,J., Shetty,J., Hostetler,J., Durkin,S. and
            Montgomery,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-AUG-2009) J. Craig Venter Institute, 9704 Medical
            Center Drive, Rockville, MD 20850, USA
REFERENCE   3  (bases 1 to 4439)
  AUTHORS   Summers,A.O., Shearer,J. and Wireman,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JUL-2009) Department of Microbiology, University of
            Georgia, 527 Biological Sciences Building, Athens, GA 30602, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Date              :: 09/10/2023 04:12:51
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.6
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 3
            CDSs (total)                 :: 3
            Genes (coding)               :: 3
            CDSs (with protein)          :: 3
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            GQ900441.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4439
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="SK1529"
                     /db_xref="taxon:1280"
                     /plasmid="SAP093A"
                     /geo_loc_name="Australia: Melbourne"
                     /collection_date="1965"
                     /identified_by="Ron Skurray, Neville Firth, Slade Jensen:
                     School of Biological Sciences, University of Sydney,
                     Sydney, AU"
                     /note="Tc; human clinical isolate"
     gene            join(3717..4439,1..222)
                     /locus_tag="HHF49_RS00005"
                     /old_locus_tag="SAP093A_001"
     CDS             join(3717..4439,1..222)
                     /locus_tag="HHF49_RS00005"
                     /old_locus_tag="SAP093A_001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000277654.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA];
                     GO:0003916 - DNA topoisomerase activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation factor domain-containing
                     protein"
                     /protein_id="WP_000277654.1"
                     /translation="MYKNNHANHSNHLENHDLDNFSKTGYSNSRLDAHTVCISDPKLSF
                     DAMTIVGNLNRDNAQALSKFMSVEPQIRLWDILQTKFKAKALQEKVYIEYDKVKADSWD
                     RRNMRIEFNPNKLTRDEMIWLKQNIISYMEDDGFTRLDLAFDFEDDLSDYYAMSDKAVK
                     KTIFYGRNGKPETKYFGVRDSNRFIRIYNKKQERKDNADAEVMSEHLWRVEIELKRDMV
                     DYWNDCFSDLHILQPDWKTIQRTADRAIVFMLLSDEEEWGKLHRNSRTKYKNLIKEISP
                     VDLTDLMKSTLKANEKQLQKQIDFWQHEFKFWK"
                     /name="replication initiation factor domain-containing
                     protein"
     gene            384..1763
                     /gene="tet(K)"
                     /locus_tag="HHF49_RS00010"
                     /old_locus_tag="SAP093A_002"
     ARG             385..1760
                     /name="tet(K)"
                     /gene="tet(K)"
                     /gene_name="tetracycline efflux MFS transporter Tet(K)"
                     /tool="amrfinderplus"
                     /drug_class="TETRACYCLINE"
                     /identity="100.0"
                     /coverage="100.0"
     gene            1949..3190
                     /gene="mobV"
                     /locus_tag="HHF49_RS00015"
                     /old_locus_tag="SAP093A_003"
     CDS             1949..3190
                     /gene="mobV"
                     /locus_tag="HHF49_RS00015"
                     /old_locus_tag="SAP093A_003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010889940.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobV family relaxase"
                     /protein_id="WP_000122374.1"
                     /translation="MSYSIVRVSKVKSGTNTTGIQKHVQRENNNYENEDIDHSKTYLNY
                     DLVNANKQNFNNLIDEKIEQNYTGKRKIRTDAIKHIDGLITSDNDFFDNQTPEDTKQFF
                     EYAKEFLEQEYGKDNLLYATVHMDEKTPHMHYGVVPITDDGRLSAKEVVGNKKALTAFQ
                     DRFNEHVKQRGYDLERGQSRQVTNAKHEQISQYKQKTEYHKQEYERESQKTDHIKQKND
                     KLMQEYQKSLNTLKKPINVPYEQETEKVGGLFSKEIQETGNVVISQKDFNEFQKQIKAA
                     QDISEDYEYIKSGRALDDKDKEIREKDDLLNKAVERIENADDNFNQLYENAKPLKENIE
                     IALKLLKILLKELERVLGRNTFAERVNKLTEDEPKLNGLAGNLDKKMNPELYSEQEQQQ
                     EQQKNQKRDRGMHL"
                     /name="mobV"
     Typing          3718..4439
                     /name="rep_cluster_1118"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          1950..3187
                     /name="MOBV"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 atccaacgca ctgcggatag agcaatagtt tttatgttat tgagtgatga agaagaatgg
       61 ggaaagcttc acagaaattc tagaacaaaa tataagaatt tgataaaaga aatttcgcca
      121 gtcgatttaa cggacttaat gaaatcgact ttaaaagcga acgaaaaaca attgcaaaaa
      181 caaatcgatt tttggcaaca tgaatttaaa ttttggaaat agtgtacata ttaatattac
      241 tgaacaaaaa tgatatattt aaactattct aatttaggag gattttttta tgaagtgtct
      301 atttaaaaat ttggggaatt tatatgaggt gaaagaataa tttaccccta taaactttag
      361 tcacctcaag taaagaggta aaattgttta gtttatataa aaaatttaaa ggtttgtttt
      421 atagcgtttt attttggctt tgtattcttt cattttttag tgtattaaat gaaatggttt
      481 taaatgtttc tttacctgat attgcaaatc attttaatac tactcctgga attacaaact
      541 gggtaaacac tgcatatatg ttaacttttt cgataggaac agcagtatat ggaaaattat
      601 ctgattatat aaatataaaa aaattgttaa ttattggtat tagtttgagc tgtcttggtt
      661 cattgattgc ttttattggt cacaatcact tttttatttt gatttttggt aggttagtac
      721 aaggagtagg atctgctgca ttcccttcac tgattatggt ggttgtagct agaaatatta
      781 caagaaaaaa acaaggcaaa gcctttggtt ttataggatc aattgtagct ttaggtgaag
      841 ggttaggtcc ttcaataggg ggaataatag cacattatat tcattggtct tacctactta
      901 tacttcctat gattacaata gtaactatac cttttcttat taaagtaatg gtacctggta
      961 aatcaacaaa aaatacatta gatatcgtag gtattgtttt aatgtctata agtattatat
     1021 gttttatgtt atttacgaca aattataatt ggactttttt aatactcttc acaatctttt
     1081 ttgtgatttt tattaaacat atttcaagag tttctaaccc ttttattaat cctaaactag
     1141 ggaaaaacat tccgtttatg cttggtttgt tttctggtgg gctaatattt tctatagtag
     1201 ctggttttat atcaatggtg ccttatatga tgaaaactat ttatcatgta aatgtagcga
     1261 caataggtaa tagtgttatt tttcctggaa ccatgagtgt tattgttttt ggttattttg
     1321 gtggtttttt agtggataga aaaggatcat tatttgtttt tattttagga tcattgtcta
     1381 tctctataag ttttttaact attgcatttt ttgttgagtt tagtatgtgg ttgactactt
     1441 ttatgtttat atttgttatg ggcggattat cttttactaa aacagttata tcaaaaatag
     1501 tatcaagtag tctttctgaa gaagaagttg cttctggaat gagtttgcta aatttcacaa
     1561 gttttttatc agagggaaca ggtatagcaa ttgtaggagg tttattgtca ctacaattga
     1621 ttaatcgtaa actagttctg gaatttataa attattcttc tggagtgtat agtaatattc
     1681 ttgtagccat ggctatcctt attattttat gttgtctttt gacgattatt gtatttaaac
     1741 gttctgaaaa gcagtttgaa tagttatatt atattttggt ttagaactat gagtggctag
     1801 cattttgcca ctcatttttt gcgttagcaa aaacaggttt aagcctcgca gagcacacgt
     1861 attaacgact tattaaaaat aagtctagtg tgttagactt aaactattaa atacacatga
     1921 aacctttgtg cttaggagtg atttttatat gtcttattcc attgttagag tttcaaaagt
     1981 taaatctgga acaaatacaa cgggcataca aaaacatgtt caaagagaaa ataataatta
     2041 tgaaaatgaa gatatagacc atagtaaaac ttacttaaat tatgatttgg taaatgctaa
     2101 taaacagaat tttaataact tgattgatga aaaaatcgaa cagaattata caggcaaaag
     2161 aaaaattaga acagacgcga ttaaacacat tgatggttta attacatcag acaatgattt
     2221 ctttgataat caaacgccag aagatacaaa gcagtttttt gaatatgcta aagagttttt
     2281 agaacaagaa tacggtaaag ataatttatt atatgcaaca gttcacatgg acgaaaaaac
     2341 accacatatg cattatggcg ttgttccaat aactgatgat ggtcgtttaa gtgctaaaga
     2401 agttgtaggt aataaaaaag ctttaacagc gtttcaagat agatttaatg agcatgttaa
     2461 acaacgagga tatgatttag aacgtgggca atcaagacaa gtaacaaatg ctaaacatga
     2521 gcaaataagt cagtataaac aaaaaacaga atatcataag caagaatatg aacgtgagag
     2581 ccaaaaaaca gaccatataa agcaaaagaa cgataaatta atgcaagagt accaaaaatc
     2641 gttaaatacg cttaaaaagc ctataaatgt tccgtatgag caagaaactg aaaaagtagg
     2701 tggtttattt agcaaagaaa tacaagaaac tggaaatgtt gtaataagcc aaaaagattt
     2761 caatgaattt cagaaacaga taaaagctgc tcaagatatt tcggaagatt acgagtatat
     2821 aaagtctggt agagccttag atgataaaga taaggaaata cgagagaaag atgatttatt
     2881 aaataaagca gttgagcgta ttgaaaacgc agacgataat tttaaccaac tttacgaaaa
     2941 tgcaaagcca cttaaagaga atatagaaat agcgttaaag cttttaaaaa tcttactaaa
     3001 agagttagaa cgagttttag gaagaaatac ctttgcggaa agagttaata agttaacaga
     3061 agatgaacca aaactaaatg gtttagcagg aaacttagat aaaaaaatga atccagaatt
     3121 atattcagaa caggaacagc aacaagaaca acaaaagaat caaaaacgag atagaggtat
     3181 gcacttatag aacatgcatt tatgccgaga aaacttattg gttggaatgg gctatgtgtt
     3241 agctaacttg ttagcgagtt ggttggactt gaattgggat taatcccaag aaagtaccaa
     3301 ctcaacaaca cataaagccc tgtaggttcc gaccaataag gaaattggaa taaagcaata
     3361 aaaggagttg aagaaatgaa attcagagaa gcctttgaga attttataac aagtaagtat
     3421 gtacttggtg ttttagtagt tttaactgtt taccagataa tacaaatgct taaataaaaa
     3481 aagacttgat ctgattagac caagtctttt gatagtgtta tattaataac aaaataaaaa
     3541 ggagtcgctc acgccctgat caaagtttgt gaacgacatc attcaaagaa aaaaacactg
     3601 agttgttttt ataatcttgt atatttagat attaaacgat atttaaatat acatcaagat
     3661 atatatttgg gtgagcgatt ccttaaacga aattgagatt aaggagtcga ttttttatgt
     3721 ataaaaacaa tcatgcaaat cattcaaatc atttggaaaa tcacgattta gacaattttt
     3781 ctaaaaccgg ctactctaat agccggttgg acgcacatac tgtgtgcata tctgatccaa
     3841 aattaagttt tgatgcaatg acgatcgttg gaaatctcaa ccgagacaac gctcaagccc
     3901 tttctaaatt tatgagtgta gagccccaaa taagactttg ggatattctt caaacaaagt
     3961 ttaaagctaa agcacttcaa gaaaaagttt atattgaata tgacaaagtg aaagcagata
     4021 gttgggatag acgtaatatg cgtattgaat ttaatccaaa caaacttaca cgagatgaaa
     4081 tgatttggtt aaaacaaaat ataataagct acatggaaga tgacggtttt acaagattag
     4141 atttagcctt tgattttgaa gatgatttga gtgactacta tgcaatgtct gataaagcag
     4201 ttaagaaaac tattttttat ggtcgtaatg gtaagccaga aacaaaatat tttggcgtga
     4261 gagatagtaa tagatttatt agaatttata ataaaaagca agaacgtaaa gataatgcag
     4321 atgctgaagt tatgtctgaa catttatggc gtgtagaaat cgaacttaaa agagatatgg
     4381 tggattactg gaatgattgc tttagtgatt tacatatctt gcaaccagat tggaaaact
//
