LOCUS       NC_013307               4439 bp    DNA     circular CON 10-SEP-2023
DEFINITION  Staphylococcus aureus plasmid SAP085A, complete sequence.
ACCESSION   NC_013307
VERSION     NC_013307.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14225442
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 4439)
  AUTHORS   Summers,A.O., Shearer,J. and Wireman,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-DEC-2009) Department of Microbiology, University of
            Georgia, 527 Biological Sciences Building, Athens, GA 30602, USA
  REMARK    Protein update by submitter
REFERENCE   2  (bases 1 to 4439)
  AUTHORS   Gill,J., Borman,J., Shetty,J., Hostetler,J., Durkin,S. and
            Montgomery,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-AUG-2009) J. Craig Venter Institute, 9704 Medical
            Center Drive, Rockville, MD 20850, USA
REFERENCE   3  (bases 1 to 4439)
  AUTHORS   Summers,A.O., Shearer,J. and Wireman,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JUL-2009) Department of Microbiology, University of
            Georgia, 527 Biological Sciences Building, Athens, GA 30602, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Date              :: 09/10/2023 04:20:29
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.6
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 3
            CDSs (total)                 :: 3
            Genes (coding)               :: 3
            CDSs (with protein)          :: 3
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            GQ900437.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4439
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="SK1396"
                     /db_xref="taxon:1280"
                     /plasmid="SAP085A"
                     /geo_loc_name="Australia: Melbourne"
                     /collection_date="1965"
                     /identified_by="Ron Skurray, Neville Firth, Slade Jensen:
                     School of Biological Sciences, University of Sydney,
                     Sydney, AU"
                     /note="Tc; human clinical isolate"
     gene            complement(39..1280)
                     /gene="mobV"
                     /locus_tag="HHF53_RS00005"
                     /old_locus_tag="SAP085A_001"
     CDS             complement(39..1280)
                     /gene="mobV"
                     /locus_tag="HHF53_RS00005"
                     /old_locus_tag="SAP085A_001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010889940.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobV family relaxase"
                     /protein_id="WP_000122374.1"
                     /translation="MSYSIVRVSKVKSGTNTTGIQKHVQRENNNYENEDIDHSKTYLNY
                     DLVNANKQNFNNLIDEKIEQNYTGKRKIRTDAIKHIDGLITSDNDFFDNQTPEDTKQFF
                     EYAKEFLEQEYGKDNLLYATVHMDEKTPHMHYGVVPITDDGRLSAKEVVGNKKALTAFQ
                     DRFNEHVKQRGYDLERGQSRQVTNAKHEQISQYKQKTEYHKQEYERESQKTDHIKQKND
                     KLMQEYQKSLNTLKKPINVPYEQETEKVGGLFSKEIQETGNVVISQKDFNEFQKQIKAA
                     QDISEDYEYIKSGRALDDKDKEIREKDDLLNKAVERIENADDNFNQLYENAKPLKENIE
                     IALKLLKILLKELERVLGRNTFAERVNKLTEDEPKLNGLAGNLDKKMNPELYSEQEQQQ
                     EQQKNQKRDRGMHL"
                     /name="mobV"
     gene            complement(1466..2845)
                     /gene="tet(K)"
                     /locus_tag="HHF53_RS00010"
                     /old_locus_tag="SAP085A_002"
     ARG             complement(1470..2845)
                     /name="tet(K)"
                     /gene="tet(K)"
                     /gene_name="tetracycline efflux MFS transporter Tet(K)"
                     /tool="amrfinderplus"
                     /drug_class="TETRACYCLINE"
                     /identity="100.0"
                     /coverage="100.0"
     gene            complement(3007..3951)
                     /locus_tag="HHF53_RS00015"
                     /old_locus_tag="SAP085A_003"
     CDS             complement(3007..3951)
                     /locus_tag="HHF53_RS00015"
                     /old_locus_tag="SAP085A_003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000277654.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA];
                     GO:0003916 - DNA topoisomerase activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation factor domain-containing
                     protein"
                     /protein_id="WP_000277654.1"
                     /translation="MYKNNHANHSNHLENHDLDNFSKTGYSNSRLDAHTVCISDPKLSF
                     DAMTIVGNLNRDNAQALSKFMSVEPQIRLWDILQTKFKAKALQEKVYIEYDKVKADSWD
                     RRNMRIEFNPNKLTRDEMIWLKQNIISYMEDDGFTRLDLAFDFEDDLSDYYAMSDKAVK
                     KTIFYGRNGKPETKYFGVRDSNRFIRIYNKKQERKDNADAEVMSEHLWRVEIELKRDMV
                     DYWNDCFSDLHILQPDWKTIQRTADRAIVFMLLSDEEEWGKLHRNSRTKYKNLIKEISP
                     VDLTDLMKSTLKANEKQLQKQIDFWQHEFKFWK"
                     /name="replication initiation factor domain-containing
                     protein"
     Typing          complement(3008..3951)
                     /name="rep_cluster_1118"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          complement(43..1280)
                     /name="MOBV"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 attccaacca ataagttttc tcggcataaa tgcatgttct ataagtgcat acctctatct
       61 cgtttttgat tcttttgttg ttcttgttgc tgttcctgtt ctgaatataa ttctggattc
      121 atttttttat ctaagtttcc tgctaaacca tttagttttg gttcatcttc tgttaactta
      181 ttaactcttt ccgcaaaggt atttcttcct aaaactcgtt ctaactcttt tagtaagatt
      241 tttaaaagct ttaacgctat ttctatattc tctttaagtg gctttgcatt ttcgtaaagt
      301 tggttaaaat tatcgtctgc gttttcaata cgctcaactg ctttatttaa taaatcatct
      361 ttctctcgta tttccttatc tttatcatct aaggctctac cagactttat atactcgtaa
      421 tcttccgaaa tatcttgagc agcttttatc tgtttctgaa attcattgaa atctttttgg
      481 cttattacaa catttccagt ttcttgtatt tctttgctaa ataaaccacc tactttttca
      541 gtttcttgct catacggaac atttataggc tttttaagcg tatttaacga tttttggtac
      601 tcttgcatta atttatcgtt cttttgcttt atatggtctg ttttttggct ctcacgttca
      661 tattcttgct tatgatattc tgttttttgt ttatactgac ttatttgctc atgtttagca
      721 tttgttactt gtcttgattg cccacgttct aaatcatatc ctcgttgttt aacatgctca
      781 ttaaatctat cttgaaacgc tgttaaagct tttttattac ctacaacttc tttagcactt
      841 aaacgaccat catcagttat tggaacaacg ccataatgca tatgtggtgt tttttcgtcc
      901 atgtgaactg ttgcatataa taaattatct ttaccgtatt cttgttctaa aaactcttta
      961 gcatattcaa aaaactgctt tgtatcttct ggcgtttgat tatcaaagaa atcattgtct
     1021 gatgtaatta aaccatcaat gtgtttaatc gcgtctgttc taatttttct tttgcctgta
     1081 taattctgtt cgattttttc atcaatcaag ttattaaaat tctgtttatt agcatttacc
     1141 aaatcataat ttaagtaagt tttactatgg tctatatctt cattttcata attattattt
     1201 tctctttgaa catgtttttg tatgcccgtt gtatttgttc cagatttaac ttttgaaact
     1261 ctaacaatgg aataagacat ataaaaatca ctcctaagca caaaggtttc atgtgtattt
     1321 aatagtttaa gtctaacaca ctagacttat ttttaataag tcgttaatac gtgtgctctg
     1381 cgaggcttaa acctgttttt gctaacgcaa aaaatgagtg gcaaaatgct agccactcat
     1441 agttctaaac caaaatataa tataactatt caaactgctt ttcagaacgt ttaaatacaa
     1501 taatcgtcaa aagacaacat aaaataataa ggatagccat ggctacaaga atattactat
     1561 acactccaga agaataattt ataaattcca gaactagttt acgattaatc aattgtagtg
     1621 acaataaacc tcctacaatt gctatacctg ttccctctga taaaaaactt gtgaaattta
     1681 gcaaactcat tccagaagca acttcttctt cagaaagact acttgatact atttttgata
     1741 taactgtttt agtaaaagat aatccgccca taacaaatat aaacataaaa gtagtcaacc
     1801 acatactaaa ctcaacaaaa aatgcaatag ttaaaaaact tatagagata gacaatgatc
     1861 ctaaaataaa aacaaataat gatccttttc tatccactaa aaaaccacca aaataaccaa
     1921 aaacaataac actcatggtt ccaggaaaaa taacactatt acctattgtc gctacattta
     1981 catgataaat agttttcatc atataaggca ccattgatat aaaaccagct actatagaaa
     2041 atattagccc accagaaaac aaaccaagca taaacggaat gtttttccct agtttaggat
     2101 taataaaagg gttagaaact cttgaaatat gtttaataaa aatcacaaaa aagattgtga
     2161 agagtattaa aaaagtccaa ttataatttg tcgtaaataa cataaaacat ataatactta
     2221 tagacattaa aacaatacct acgatatcta atgtattttt tgttgattta ccaggtacca
     2281 ttactttaat aagaaaaggt atagttacta ttgtaatcat aggaagtata agtaggtaag
     2341 accaatgaat ataatgtgct attattcccc ctattgaagg acctaaccct tcacctaaag
     2401 ctacaattga tcctataaaa ccaaaggctt tgccttgttt ttttcttgta atatttctag
     2461 ctacaaccac cataatcagt gaagggaatg cagcagatcc tactccttgt actaacctac
     2521 caaaaatcaa aataaaaaag tgattgtgac caataaaagc aatcaatgaa ccaagacagc
     2581 tcaaactaat accaataatt aacaattttt ttatatttat ataatcagat aattttccat
     2641 atactgctgt tcctatcgaa aaagttaaca tatatgcagt gtttacccag tttgtaattc
     2701 caggagtagt attaaaatga tttgcaatat caggtaaaga aacatttaaa accatttcat
     2761 ttaatacact aaaaaatgaa agaatacaaa gccaaaataa aacgctataa aacaaacctt
     2821 taaatttttt atataaacta aacaatttta cctctttact tgaggtgact aaagtttata
     2881 ggggtaaatt attctttcac ctcatataaa ttccccaaat ttttaaatag acacttcata
     2941 aaaaaatcct cctaaattag aatagtttaa atatatcatt tttgttcagt aatattaata
     3001 tgtacactat ttccaaaatt taaattcatg ttgccaaaaa tcgatttgtt tttgcaattg
     3061 tttttcgttc gcttttaaag tcgatttcat taagtccgtt aaatcgactg gcgaaatttc
     3121 ttttatcaaa ttcttatatt ttgttctaga atttctgtga agctttcccc attcttcttc
     3181 atcactcaat aacataaaaa ctattgctct atccgcagtg cgttggatag ttttccaatc
     3241 tggttgcaag atatgtaaat cactaaagca atcattccag taatccacca tatctctttt
     3301 aagttcgatt tctacacgcc ataaatgttc agacataact tcagcatctg cattatcttt
     3361 acgttcttgc tttttattat aaattctaat aaatctatta ctatctctca cgccaaaata
     3421 ttttgtttct ggcttaccat tacgaccata aaaaatagtt ttcttaactg ctttatcaga
     3481 cattgcatag tagtcactca aatcatcttc aaaatcaaag gctaaatcta atcttgtaaa
     3541 accgtcatct tccatgtagc ttattatatt ttgttttaac caaatcattt catctcgtgt
     3601 aagtttgttt ggattaaatt caatacgcat attacgtcta tcccaactat ctgctttcac
     3661 tttgtcatat tcaatataaa ctttttcttg aagtgcttta gctttaaact ttgtttgaag
     3721 aatatcccaa agtcttattt ggggctctac actcataaat ttagaaaggg cttgagcgtt
     3781 gtctcggttg agatttccaa cgatcgtcat tgcatcaaaa cttaattttg gatcagatat
     3841 gcacacagta tgtgcgtcca accggctatt agagtagccg gttttagaaa aattgtctaa
     3901 atcgtgattt tccaaatgat ttgaatgatt tgcatgattg tttttataca taaaaaatcg
     3961 actccttaat ctcaatttcg tttaaggaat cgctcaccca aatatatatc ttgatgtata
     4021 tttaaatatc gtttaatatc taaatataca agattataaa aacaactcag tgtttttttc
     4081 tttgaatgat gtcgttcaca aactttagtc agggcgtgag cgactccttt ttattttgtt
     4141 attaatataa cactatcaaa agacttggtc taatcagatc aagtcttttt ttatttaagc
     4201 atttgtatta tctggtaaac agttaaaact actaaaacac caagtacata cttacttgtt
     4261 ataaaattct caaaggcttc tctgaatttc atttcttcaa ctccttttat tgctttattc
     4321 caatttcctt attggtcgga acctacaggg ctttatgtgt tgttgagttg gtactttctt
     4381 gggattaatc ccaattcaag tccaaccaac tcgctaacaa gttagctaac acatagccc
//
