LOCUS       NC_013305               2415 bp    DNA     circular CON 10-SEP-2023
DEFINITION  Staphylococcus aureus plasmid SAP078B, complete sequence.
ACCESSION   NC_013305
VERSION     NC_013305.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14225448
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 2415)
  AUTHORS   Summers,A.O., Shearer,J. and Wireman,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-DEC-2009) Department of Microbiology, University of
            Georgia, 527 Biological Sciences Building, Athens, GA 30602, USA
  REMARK    Protein update by submitter
REFERENCE   2  (bases 1 to 2415)
  AUTHORS   Gill,J., Borman,J., Shetty,J., Hostetler,J., Durkin,S. and
            Montgomery,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-AUG-2009) J. Craig Venter Institute, 9704 Medical
            Center Drive, Rockville, MD 20850, USA
REFERENCE   3  (bases 1 to 2415)
  AUTHORS   Summers,A.O., Shearer,J. and Wireman,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JUL-2009) Department of Microbiology, University of
            Georgia, 527 Biological Sciences Building, Athens, GA 30602, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Date              :: 09/10/2023 04:04:53
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.6
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 2
            CDSs (total)                 :: 2
            Genes (coding)               :: 2
            CDSs (with protein)          :: 2
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            GQ900431.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2415
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="A78R1"
                     /db_xref="taxon:1280"
                     /plasmid="SAP078B"
                     /geo_loc_name="United Kingdom"
                     /collection_date="2007"
                     /identified_by="Jodi Lindsay, Department of Cellular and
                     Molecular Medicine, St. George's, University of London,
                     London, UK"
                     /note="MRSA; not from infection"
     gene            complement(234..968)
                     /gene="erm(C)"
                     /locus_tag="HHF59_RS00005"
                     /old_locus_tag="SAP078B_001"
     ARG             complement(238..968)
                     /name="erm(C)"
                     /gene="erm(C)"
                     /gene_name="23S rRNA (adenine(2058)-N(6))-methyltransferase
                     Erm(C)"
                     /tool="amrfinderplus"
                     /drug_class="LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN"
                     /identity="100.0"
                     /coverage="100.0"
     gene            complement(1725..2201)
                     /locus_tag="HHF59_RS00010"
                     /old_locus_tag="SAP078B_002"
     CDS             complement(1725..2201)
                     /locus_tag="HHF59_RS00010"
                     /old_locus_tag="SAP078B_002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000664727.1"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA];
                     GO:0006276 - plasmid maintenance [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="WP_000664727.1"
                     /translation="MKERYGTVYKGSQRLIDEESGEVIEVDKLYRKQTSGNFVKAYIVQ
                     LISMLDMIGGKKLKIVNYILDNVHLSNNTMIATTREIAKATGTSLQTVITTLKILEEGN
                     IIKRKTGVLMLNPELLMRGDDQKQKYLLLEFGNFEQEANEKQENALSDYYSFKD"
                     /name="replication/maintenance protein RepL"
     ARG             complement(235..968)
                     /name="ErmC"
                     /gene="ErmC"
                     /gene_name="Erm 23S ribosomal RNA methyltransferase"
                     /tool="rgi"
                     /drug_class="macrolide antibiotic; lincosamide antibiotic;
                     streptogramin antibiotic; streptogramin A antibiotic;
                     streptogramin B antibiotic"
                     /identity="99.59"
                     /coverage="100.0"
     Typing          complement(1716..2201)
                     /name="rep_cluster_1947"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.591"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 acgtaaatgc tacccttcgg ctcgctttcg ctcggcattg acgtcagata ctgcaccccc
       61 tgaaccccca tgctccaaca gcaaaaagga aactttttgc tgcttttccg acgcttattc
      121 gcttcgctca tatttatata gaaaagaagt gaatgcgcaa aagacataat cgattcacaa
      181 aaaataggta cacgaaaaac aagttaaggg atgcagttta tgcatccctt aacttactta
      241 ttaaataatt tatagctatt gaaaagagat aagaattgtt caaagctaat attgtttaaa
      301 tcgtcaattc ctgcatgttt taaggaattg ttaaattgat tttttgtaaa tattttcttg
      361 tattctttgt taacccattt cataacgaaa taattatact tctgtttatc tttgtgtgat
      421 attcttgatt tttttctatt taatctgata agtgagctat tcactttagg tttaggatga
      481 aaatattctc ttggaaccat acttaatata gaaatatcaa cttctgccat taaaaataat
      541 gccaatgagc gttttgtatt taataatctt ttagcaaacc cgtattccac gattaaataa
      601 atctcatcag ctatactatc aaaaacaatt ttgcgtatta tatccgtact tatgttataa
      661 ggtatattac caaatatttt ataggattgg tttttaggaa atttaaactg caatatatcc
      721 ttgtttaaaa cttggaaatt atcgtgatca acaagtttat tttctgtagt tttgcataat
      781 ttatggtcta tttcaatggc agttacgaaa ttacacctct gtactaattc aagggtaaaa
      841 tgcccttttc ctgagccgat ttcaaagata ttatcatgtt catttaatct tatatttgtc
      901 attattttat ctatattatg ttttgaagta ataaagtttt gactgtgttt tatatttttc
      961 tcgttcatta taaccctctt taatttggtt ataatgaatt ttgcttatta acgattcatt
     1021 ataaccactt attttttcct ccttataaaa ttagtataat tatagcacga gctctgataa
     1081 atatgaacat gatgagtgat cgttaaattt atactgcaat ctgatgcgat tattgaataa
     1141 aagatatgag agatttatct agtttctttt tttacaagaa aaaagaaagt tcttaaaggt
     1201 tttatacttt tggtcgtaga gcacacggtt taacgactta attacgaagt aaataagtct
     1261 agtgtgttag actttaatgt ttttttaagg cattagtgca tttaagcgtc agagcatggc
     1321 tttatgccga gaaaactatt ggttggaatg gcgtgtgtgt tagccaaagc tttggcgagt
     1381 tggttggggg tttcatggga ttaatcccat gaaagtacca actcaacaac acactaacgc
     1441 ctgttggttc caaccaatag gaaattggaa taagcaatta gtataatgag agtataatgt
     1501 tggtataacg ttagtataat gatgcttttt ttcattatat tttttatgta ctttaaacct
     1561 gcacgcttat gtgaattaga aaaagcttaa tcgcatttca tagattgacc tcccaataac
     1621 tacgtggtgt tattgggagg tcaatctatt tcatttgcgt taagcttttg atctacatta
     1681 agcgtgcagg ttttttgtct atttgtagac gattttatgt tatactagtc cttgaaagaa
     1741 taataatcag ataatgcatt ttcttgtttt tcatttgcct cttgctcaaa gttcccaaat
     1801 tcgagtaaga ggtatttttg tttttggtcg tcgcctctca ttagtagttc agggtttaac
     1861 attaatactc cagtttttct ttttataata tttccttctt ctaagatttt aagtgttgtt
     1921 attactgttt gtagacttgt tcctgtagct tttgctattt ctcttgttgt agctatcatt
     1981 gtattgttac ttaagtggac attatctagg atatagttaa cgattttaag tttttttccg
     2041 ccaatcatat ctaacatact tattaattgc actatatatg cctttacgaa gttaccagac
     2101 gtttgtttac ggtataactt gtctacctct atgacttctc cactttcttc gtctatgagc
     2161 ctctgagagc ctttatagac tgttccatat ctttctttca tctttttctc actccttatt
     2221 ttaaactatt ctaactatat cataactgtt ctaaaaaaaa aagaacattt gttaaaagaa
     2281 attagaacaa aatgagtgaa aaattagaac aaacaaattc cttataaacc ttatcatctc
     2341 aacctatatt aagattttac ctagttgaat cttcttttct atataaagcg tcggagcata
     2401 tcagggggtt atcta
//
