LOCUS       NC_013302               3011 bp    DNA     circular CON 10-SEP-2023
DEFINITION  Staphylococcus aureus plasmid SAP070A, complete sequence.
ACCESSION   NC_013302
VERSION     NC_013302.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14225456
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 3011)
  AUTHORS   Summers,A.O., Shearer,J. and Wireman,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-DEC-2009) Department of Microbiology, University of
            Georgia, 527 Biological Sciences Building, Athens, GA 30602, USA
  REMARK    Protein update by submitter
REFERENCE   2  (bases 1 to 3011)
  AUTHORS   Gill,J., Borman,J., Shetty,J., Hostetler,J., Durkin,S. and
            Montgomery,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-AUG-2009) J. Craig Venter Institute, 9704 Medical
            Center Drive, Rockville, MD 20850, USA
REFERENCE   3  (bases 1 to 3011)
  AUTHORS   Summers,A.O., Shearer,J. and Wireman,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JUL-2009) Department of Microbiology, University of
            Georgia, 527 Biological Sciences Building, Athens, GA 30602, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Date              :: 09/10/2023 04:06:16
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.6
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 2
            CDSs (total)                 :: 2
            Genes (coding)               :: 2
            CDSs (with protein)          :: 2
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            GQ900423.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3011
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="S54"
                     /db_xref="taxon:1280"
                     /plasmid="SAP070A"
                     /geo_loc_name="United Kingdom: London"
                     /collection_date="2003"
                     /identified_by="Jodi Lindsay, Department of Cellular and
                     Molecular Medicine, St. George's, University of London,
                     London, UK"
                     /note="HA-MRSA; clinical, hospital-acquired infection"
     gene            join(2819..3011,1..803)
                     /locus_tag="HHF67_RS00005"
                     /old_locus_tag="SAP070A_001"
     CDS             join(2819..3011,1..803)
                     /locus_tag="HHF67_RS00005"
                     /old_locus_tag="SAP070A_001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001199895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_001199895.1"
                     /translation="MQYNTTRSITENQDNKTLKDMTKSGKQRPWREKKIDNVSYADILE
                     ILKIKKAYNVKQCGNVLEFKPTDEGYLKLHKTWFCKSKLCPVCNWRRAMKNSYQAQKVI
                     EEVIKEKPKARWLFLTLSTKNAIDGDTLEQSLKHLTKAFDRLSRYKKVKQNLVGFMRST
                     EVTVNKNDGSYNQHMHVLLCVENAYFRKKENYITQEEWVNLWQKALQVDYRPVANIKAI
                     KPNQKGDKDIESAIKETSKYSVKSSDFLTDNDEKNQEIVSDLEKGLYRKRMLSYGGLLK
                     QKHKILNLDDAEDGNLINTSDEDKITDEEAKAHSITAIWNFEKQNYYLRH"
                     /name="protein rep"
     gene            complement(1786..2367)
                     /locus_tag="HHF67_RS00010"
                     /old_locus_tag="SAP070A_002"
     CDS             complement(1786..2367)
                     /locus_tag="HHF67_RS00010"
                     /old_locus_tag="SAP070A_002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000991701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000991701.1"
                     /translation="MNAIQKSVSLRKVLVISLSFLTILSMVLNFNFKEAQAQNKNNIAD
                     KNIETLNEKEIEKELDYIYGKIIVLDKDGTAKDVNLENAKSRYGYVPEGFQKLKNDIEN
                     KKKNSSISPRAVGGNYKNSNDCFYSEVLNSYGELLTGNIIAAVFDDVKAKNIKSAAKKL
                     ARIGIKGNLAGIAATMVSKDVQCTLKYGWF"
                     /name="hypothetical protein"
     Typing          874..1038
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="99.398"
                     /coverage="100.0"
                     /evalue="1.13e-79"
     Typing          2..803
                     /name="rep_cluster_1017"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="96.887"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 agccgaccga tgaaggttat ttgaaattac ataagacgtg gttttgtaaa tcaaagctat
       61 gtccagtttg taattggagg cgtgctatga aaaatagtta tcaagctcaa aaagtgattg
      121 aagaagtaat taaggaaaag ccaaaagcac gttggttgtt tttaacactt tcaaccaaaa
      181 atgcgataga tggagatact ttagaacaaa gtttgaagca tctaactaaa gcatttgata
      241 ggttgagtag atataaaaag gttaaacaaa atcttgttgg atttatgcgt tcaacagaag
      301 ttaccgttaa taaaaatgat ggtagttata atcagcatat gcacgttttg ttatgtgttg
      361 aaaatgcata ttttagaaaa aaagagaatt atataactca agaagaatgg gttaatttat
      421 ggcaaaaagc attacaagtt gattatcgac ctgttgcaaa tattaaagca attaaaccta
      481 atcaaaaagg cgataaagat attgaatcgg caatcaaaga gacatcaaaa tattcggtta
      541 agtcatctga ttttttaact gacaatgacg aaaaaaatca agaaattgta agtgatttag
      601 aaaaaggttt atatcgaaaa cgtatgttaa gttatggtgg attgcttaaa caaaagcata
      661 aaattttaaa cttagacgat gctgaagatg gtaatttaat taatacaagt gatgaagata
      721 aaataacaga tgaagaagca aaagcacatt caattacggc aatttggaat tttgaaaaac
      781 aaaattatta tttaagacat tagtgatgac tgatgtcttt tttattgatt ttttgtaaaa
      841 aagtactgtc ttatttttgt gacaaatgct gtatgtagtg tcacaaaact gtgacaaacg
      901 caatatattg tgtcacaaaa gtgtgacact acagcttttt atgatatcac tttaaaatta
      961 cttaaaaccc ttggaatgtc tggctttgcc agacctatca tttttgaatg atagcaaatt
     1021 ctccttatgc tcttacggag ttcttagaga aaaattaaaa attctcgatt tttgataaaa
     1081 agcgccctgc aggaatttag aaaaacatgg gggaagtttt aaaggatttt atgctaattt
     1141 ttaatttgca tgtaaatggg cagtgtccga aaaatcgaca ctgggtttga tcgaattttt
     1201 gattataaaa aatttttgat tataaaatca gaatatattt atttggctca tatttgcgtt
     1261 ttaagaaaca aataagataa tacaggtata aaactatata tttttaaagt tcgttctaaa
     1321 taccccctta aaatgcaaaa taagtatatt cgattattac acgtaaattt tggttttagc
     1381 tcgacgcatt tttaagtatg taaatgcgcc tcttggataa cgaaaaataa aaaatcttaa
     1441 ttaaacagag tttaactaag atagtcacga attttattag gtttaaaaat tatgattact
     1501 tcagatgttt agaattaagg tgttgattat agtgtgaatg aaagcaaggg ataataatta
     1561 gtaaatcagt gcacaattaa tgttttattt aagggatagt tacacgcata atcaaacatg
     1621 catttatgcc gagaaaattt attgatgttg agaagaaccc ttaactaaac ttgaagacga
     1681 atgtcggcat agcgtgagct attaagccga cgattcgaca agtttaggga ttgttaaggg
     1741 ttccgaggct caacgtcaat aaagcaattg gaataaatta tatatttaga accatccgta
     1801 tttcagagta cattgtacat cctttgaaac catagtagct gcaattccag ctaaatttcc
     1861 ttttatgcca attctggcta atttttttgc tgcactcttt atgtttttgg cttttacatc
     1921 atcaaaaact gctgcgatta tattaccggt taaaagttct ccatatgagt ttaaaacttc
     1981 agaatagaaa cagtcattac tatttttgta gtttccacca actgctctag gtgatattga
     2041 gctatttttc tttttattct ctatgtcgtt ctttagtttt tggaaacctt caggaacata
     2101 tccatatcta gatttggcat tttctagatt aacatcttta gcggttccgt ctttatctaa
     2161 aacaataatt ttgccatata tgtagtctag ttctttttcg atttcttttt cgtttaaagt
     2221 ttcaatgttt ttatctgcga tgttgttttt gttttgggct tgagcttctt taaaattaaa
     2281 attcaagacc attgaaagta tagttaaaaa acttaaagat attactaaaa cttttcttag
     2341 tgatacactt ttttgaattg cattcattat aaatgccccc ttgttttgtt atttaaatga
     2401 atccaatata atattaacat ataaaaacaa aggagtttaa tatgaataag tttatttatt
     2461 ttttaattgt tttattgtcc gtatttttaa tatttaattt tgttaattcg attttattta
     2521 ataatccttt tgacttttta gaaagcttta tttattcgtt ggttttcaca ttgatttatt
     2581 taggtttaga gggctataaa gagaaaaaga aatagattgt ttttgaaacg agttgaaaac
     2641 gagtttcttc ttgtcttgat actatataga aataactcga ttttatatat atagctgtaa
     2701 ctgttgatat tacagcgttt aaacgtgttt ttgtgcgtga aaggaaaatt tgacaataaa
     2761 aaaccccagt tatattatta aggtgtcgaa tcttaaataa tactgggggt ctttttatat
     2821 gcaatataat actactagaa gtataaccga aaatcaagat aataaaacgt taaaagatat
     2881 gacgaaaagt gggaaacaac gcccatggag agaaaagaaa atagataatg taagctatgc
     2941 agatatactt gaaattttaa aaataaaaaa ggcttataac gtaaaacaat gtggtaacgt
     3001 cttagaattc a
//
