LOCUS       NC_013300               3125 bp    DNA     circular CON 10-SEP-2023
DEFINITION  Staphylococcus aureus plasmid SAP051B, complete sequence.
ACCESSION   NC_013300
VERSION     NC_013300.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14225406
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 3125)
  AUTHORS   Summers,A.O., Shearer,J. and Wireman,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-DEC-2009) Department of Microbiology, University of
            Georgia, 527 Biological Sciences Building, Athens, GA 30602, USA
  REMARK    Protein update by submitter
REFERENCE   2  (bases 1 to 3125)
  AUTHORS   Gill,J., Borman,J., Shetty,J., Hostetler,J., Durkin,S. and
            Montgomery,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-AUG-2009) J. Craig Venter Institute, 9704 Medical
            Center Drive, Rockville, MD 20850, USA
REFERENCE   3  (bases 1 to 3125)
  AUTHORS   Summers,A.O., Shearer,J. and Wireman,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JUL-2009) Department of Microbiology, University of
            Georgia, 527 Biological Sciences Building, Athens, GA 30602, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Date              :: 09/10/2023 04:03:14
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.6
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 4
            CDSs (total)                 :: 4
            Genes (coding)               :: 4
            CDSs (with protein)          :: 4
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            GQ900411.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3125
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="NE 3883"
                     /db_xref="taxon:1280"
                     /plasmid="SAP051B"
                     /geo_loc_name="USA"
                     /identified_by="Kenneth Bayles: Department of Pathology and
                     Microbiology, University of Nebraska Medical Center, Omaha,
                     NE, USA"
                     /note="human clinical blood isolate"
     gene            complement(join(2760..3125,1..630))
                     /locus_tag="HHF19_RS00005"
                     /old_locus_tag="SAP051B_005"
     CDS             complement(join(2760..3125,1..630))
                     /locus_tag="HHF19_RS00005"
                     /old_locus_tag="SAP051B_005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001199895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_001199892.1"
                     /translation="MQYNTTRSITENQDNKTLKDMTKSGKQRPWREKKIDNVSYADILE
                     ILKIKKAFNVKQCGNILEFKPTDEGYLKLHKTWFCKSKLCPVCNWRRAMKNSYQAQKVI
                     EKVIKEKPKARWLFLTLSTKNAIDGDTLEQSLKHLTKAFDRLSRYKKVKQNLVGFMRST
                     EVTVNKNDGSYNQHMHVLLCVENAYFRKKENYITQEEWVNLWQRALQVDYRPVANVKAI
                     KPNRKGDKDIESAIKETSKYSVKSSDFLTDDDEKNQEIVSDLEKGLYRKRMLSYGGLLK
                     QKHKILNLDDVEDGNLINASDEDKTTDEEEKAHSITAIWNFEKQNYYLRH"
                     /name="protein rep"
     gene            1082..1663
                     /locus_tag="HHF19_RS00010"
                     /old_locus_tag="SAP051B_002"
     CDS             1082..1663
                     /locus_tag="HHF19_RS00010"
                     /old_locus_tag="SAP051B_002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000991705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000991705.1"
                     /translation="MNAIQNSISLRKILVVSLSILTILSMVLDFNFKEAQAQNKNNIAD
                     KNVETLNEKEIEKELKYIYGKIIILDKDGTAKDVNLENAKSRYGYVPEGFQKLKNDIEN
                     KKKTSSISPRAVGGNYKNSGDCFYSEVLNSYGELLTGNIITAVFEDVKAKNLKGVAKKL
                     AKIGIKGNLAGIAATMVSKDVQCNLKYGLL"
                     /name="hypothetical protein"
     gene            complement(1833..1955)
                     /locus_tag="HHF19_RS00020"
                     /old_locus_tag="SAP051B_003"
     CDS             complement(1833..1955)
                     /locus_tag="HHF19_RS00020"
                     /old_locus_tag="SAP051B_003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000491229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000491229.1"
                     /translation="MFSHCFFIPIGVVAYFLFFYKDDAFDEMEEKYDYHEDNKK"
                     /name="hypothetical protein"
     gene            complement(1989..2177)
                     /locus_tag="HHF19_RS00015"
                     /old_locus_tag="SAP051B_004"
     CDS             complement(1989..2177)
                     /locus_tag="HHF19_RS00015"
                     /old_locus_tag="SAP051B_004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001030810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001039248.1"
                     /translation="MNKNTVLDEGYVIATILNVFFLLGLIFISHLENLYILIPYVILMG
                     INAIYLVVKVMNFKKNN"
                     /name="hypothetical protein"
     Typing          complement(2526..2690)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.42e-81"
     Typing          complement(2..630)
                     /name="rep_cluster_1017"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="90.506"
                     /coverage="98.0"
                     /evalue="0.0"
     Typing          complement(2761..3125)
                     /name="rep_cluster_1017"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ttgtaatgct ctttgccata aattaaccca ttcttcttga gttatataat tctctttttt
       61 tctaaaatat gcattttcaa cacataacaa aacatgcatg tgctgattat aactaccgtc
      121 atttttatta acggtaactt ctgttgaacg cataaatcca acaagatttt gtttaacctt
      181 tttatatcta ctcaacctat caaatgcttt agttagatgc ttcaaacttt gttctaaagt
      241 atctccatct atcgcatttt ttgttgaaag tgttaaaaac aaccaacgtg cttttggctt
      301 ttccttaatt actttttcaa tcactttttg agcttgataa ctatttttca tagcacgtct
      361 ccaattacaa accggacata attttgattt acaaaaccat gtcttatgta acttcaaata
      421 gccttcatca gttggcttaa attctaaaat attaccacat tgttttacat taaaagcctt
      481 tttgattttt aaaatttcta gtatatctgc atagcttaca ttatctattt tcttttctct
      541 ccatgggcgt tgtttcccac ttttcgtcat atcttttaac gttttattat cttgattttc
      601 ggttatactt ctagtagtat tatattgcat ataaaaagac ccccagtatt atttaagatt
      661 cgacacctta ataatataac tggggttttt tattgtcaaa ttttcctttc acgcacaaaa
      721 acacgtttaa acactgtaat atcaacagtt acagctatat atataaaatc gagttatttc
      781 tatatagtat caagacaaga agaaactcgt tcacactcgt ttcaaaaaac aacctattcc
      841 ttcttctttt tatgaccctc taaacctaaa taaattaatg tgaaaaccaa tgaataaata
      901 aaactttcta aaaagtcaaa aggattatca aataaaatcg aattaacaaa attaaaaatt
      961 aaaaatacag ataataaaat aatcaaaaag taaaaaaact tattcatatt aaactccttt
     1021 gtttttatat gttaatatta tattgaattc atttaaataa caaaacaagg gggcatttac
     1081 aatgaatgca attcaaaaca gtatatcact aagaaagatt ttagtagtat ctttaagtat
     1141 tttaaccata ctttcaatgg tcttggattt taatttcaaa gaagctcaag cccaaaacaa
     1201 aaataacatt gcagataaaa acgttgaaac tttaaacgaa aaagaaattg aaaaagaact
     1261 aaaatacata tatggcaaaa ttattatttt agataaagac ggaacagcta aagatgttaa
     1321 tctagaaaat gccaaatctc gatatggata tgttcctgaa ggattccaaa aactaaaaaa
     1381 cgacatagag aataaaaaga aaactagttc aatatcacct agagcagttg gtgggaacta
     1441 caaaaatagc ggtgactgtt tctattctga agttttaaac tcatatggag aacttttaac
     1501 tggaaacata atcacagcag tttttgaaga tgttaaagcc aaaaacttaa agggcgtagc
     1561 aaaaaaatta gctaaaattg ggataaaagg aaacctagct ggaatcgcag ctactatggt
     1621 ttcgaaggat gtacaatgta atcttaaata cgggttactt tagatactat ttattccaat
     1681 tgctttattg acgttgagcc tcggaaccct taacaatccc aaaacttgtc gaatggtcgg
     1741 cttaatagct cacgctatgc cgacattcgt ctgcaagttt agttaagggt tcttctcaac
     1801 atcaataaat tttctcggca taaatgcgtc gtctattttt tattatcttc atgataatca
     1861 tatttttctt ccatctcgtc aaaagcatca tctttataga aaaacaaaaa gtaagcaaca
     1921 acaccaatag gaataaaaaa acagtgtgaa aacaagaaga aactcgtttc aaaatcccct
     1981 caaatattct aattattctt tttgaaattc ataaccttaa caaccaaata aatagcattt
     2041 attcccatca aaataacata cggaattaat atatataaat tttccaaatg agatataaaa
     2101 attaatccaa gtaaaaagaa aacatttaaa atagttgcta taacgtaacc ttcatctaac
     2161 actgtgtttt tattcaaaat aaacactcct tttttaaaaa actttatcac aagacttact
     2221 caaattataa atacctttat tttgagtttt aagggggtat tttaaaggtt tagggggtat
     2281 catataggtt tttaacttaa aaatatatac aagctcttaa aacgcaaata tgagccaaat
     2341 aaatatatgg taatttcaca aacaaaaatt tcagcaaaac cagtgactaa ttttttaaca
     2401 ctgcccattt acatgcaaat taaaaattag cataaaatcc tttaaaactt ccacatgttt
     2461 ttctaaattc ctgcagggcg ttttttatca aaaatcgaga atttttaatt tttctctaaa
     2521 aactccgtaa gagcataagg agaatttgct atcattcaaa aatgataggt ctggcaaagc
     2581 cagaaattcc aggggtttta aggtatttta aagtgatatc atacaaagct gtactgtctt
     2641 atttttgtga cacaatatat tgcgtttgtc ttatttttgt gacactacat acagcatttg
     2701 tcacaaaaat aagacagtac ttttttataa aaaatcaaca aaaaagacat tagtcaacac
     2761 taatgtctta aataataatt ttgcttttcg aaattccaaa ttgcggtaat tgaatgtgct
     2821 ttttcttctt cgtctgttgt tttatcttca tcacttgcat taatcaaatt accatcttcg
     2881 acatcgtcta agtttaaaat tttatgtttt tgtttaagca atccaccata acttaacata
     2941 cgttttcgat acaaaccttt ttctaaatca cttacaattt cttgattttt ttcatcatca
     3001 tcagttaaaa aatcagatga tttaaccgaa tattttgagg tctctttgat tgccgattca
     3061 atgtctttat cgccttttct attcggtttg atcgctttaa cattagcaac aggtcgatag
     3121 tcaac
//
