LOCUS       NC_013297               3125 bp    DNA     circular CON 10-SEP-2023
DEFINITION  Staphylococcus aureus plasmid SAP049B, complete sequence.
ACCESSION   NC_013297
VERSION     NC_013297.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14225409
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 3125)
  AUTHORS   Summers,A.O., Shearer,J. and Wireman,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-DEC-2009) Department of Microbiology, University of
            Georgia, 527 Biological Sciences Building, Athens, GA 30602, USA
  REMARK    Protein update by submitter
REFERENCE   2  (bases 1 to 3125)
  AUTHORS   Gill,J., Borman,J., Shetty,J., Hostetler,J., Durkin,S. and
            Montgomery,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-AUG-2009) J. Craig Venter Institute, 9704 Medical
            Center Drive, Rockville, MD 20850, USA
REFERENCE   3  (bases 1 to 3125)
  AUTHORS   Summers,A.O., Shearer,J. and Wireman,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JUL-2009) Department of Microbiology, University of
            Georgia, 527 Biological Sciences Building, Athens, GA 30602, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Date              :: 09/10/2023 03:58:28
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.6
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 4
            CDSs (total)                 :: 4
            Genes (coding)               :: 4
            CDSs (with protein)          :: 4
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            GQ900408.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3125
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="NE 3868"
                     /db_xref="taxon:1280"
                     /plasmid="SAP049B"
                     /geo_loc_name="USA"
                     /identified_by="Kenneth Bayles: Department of Pathology and
                     Microbiology, University of Nebraska Medical Center, Omaha,
                     NE, USA"
                     /note="human clinical blood isolate"
     gene            173..361
                     /locus_tag="HHF22_RS00005"
                     /old_locus_tag="SAP049B_001"
     CDS             173..361
                     /locus_tag="HHF22_RS00005"
                     /old_locus_tag="SAP049B_001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001030810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001039248.1"
                     /translation="MNKNTVLDEGYVIATILNVFFLLGLIFISHLENLYILIPYVILMG
                     INAIYLVVKVMNFKKNN"
                     /name="hypothetical protein"
     gene            395..517
                     /locus_tag="HHF22_RS00020"
                     /old_locus_tag="SAP049B_002"
     CDS             395..517
                     /locus_tag="HHF22_RS00020"
                     /old_locus_tag="SAP049B_002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000491229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000491229.1"
                     /translation="MFSHCFFIPIGVVAYFLFFYKDDAFDEMEEKYDYHEDNKK"
                     /name="hypothetical protein"
     gene            complement(687..1268)
                     /locus_tag="HHF22_RS00010"
                     /old_locus_tag="SAP049B_003"
     CDS             complement(687..1268)
                     /locus_tag="HHF22_RS00010"
                     /old_locus_tag="SAP049B_003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000991705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000991705.1"
                     /translation="MNAIQNSISLRKILVVSLSILTILSMVLDFNFKEAQAQNKNNIAD
                     KNVETLNEKEIEKELKYIYGKIIILDKDGTAKDVNLENAKSRYGYVPEGFQKLKNDIEN
                     KKKTSSISPRAVGGNYKNSGDCFYSEVLNSYGELLTGNIITAVFEDVKAKNLKGVAKKL
                     AKIGIKGNLAGIAATMVSKDVQCNLKYGLL"
                     /name="hypothetical protein"
     gene            1720..2715
                     /locus_tag="HHF22_RS00015"
                     /old_locus_tag="SAP049B_005"
     CDS             1720..2715
                     /locus_tag="HHF22_RS00015"
                     /old_locus_tag="SAP049B_005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001199895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_001199892.1"
                     /translation="MQYNTTRSITENQDNKTLKDMTKSGKQRPWREKKIDNVSYADILE
                     ILKIKKAFNVKQCGNILEFKPTDEGYLKLHKTWFCKSKLCPVCNWRRAMKNSYQAQKVI
                     EKVIKEKPKARWLFLTLSTKNAIDGDTLEQSLKHLTKAFDRLSRYKKVKQNLVGFMRST
                     EVTVNKNDGSYNQHMHVLLCVENAYFRKKENYITQEEWVNLWQRALQVDYRPVANVKAI
                     KPNRKGDKDIESAIKETSKYSVKSSDFLTDDDEKNQEIVSDLEKGLYRKRMLSYGGLLK
                     QKHKILNLDDVEDGNLINASDEDKTTDEEEKAHSITAIWNFEKQNYYLRH"
                     /name="protein rep"
     Typing          2786..2950
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.42e-81"
     Typing          1721..2715
                     /name="rep_cluster_1017"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.9"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 catatattta tttggctcat atttgcgttt taagagcttg tatatatttt taagttaaaa
       61 acctatatga taccccctaa acctttaaaa taccccctta aaactcaaaa taaaggtatt
      121 tataatttga gtaagtcttg tgataaagtt ttttaaaaaa ggagtgttta ttttgaataa
      181 aaacacagtg ttagatgaag gttacgttat agcaactatt ttaaatgttt tctttttact
      241 tggattaatt tttatatctc atttggaaaa tttatatata ttaattccgt atgttatttt
      301 gatgggaata aatgctattt atttggttgt taaggttatg aatttcaaaa agaataatta
      361 gaatatttga ggggattttg aaacgagttt cttcttgttt tcacactgtt tttttattcc
      421 tattggtgtt gttgcttact ttttgttttt ctataaagat gatgcttttg acgagatgga
      481 agaaaaatat gattatcatg aagataataa aaaatagacg acgcatttat gccgagaaaa
      541 tttattgatg ttgagaagaa cccttaacta aacttgcaga cgaatgtcgg catagcgtga
      601 gctattaagc cgaccattcg acaagttttg ggattgttaa gggttccgag gctcaacgtc
      661 aataaagcaa ttggaataaa tagtatctaa agtaacccgt atttaagatt acattgtaca
      721 tccttcgaaa ccatagtagc tgcgattcca gctaggtttc cttttatccc aattttagct
      781 aatttttttg ctacgccctt taagtttttg gctttaacat cttcaaaaac tgctgtgatt
      841 atgtttccag ttaaaagttc tccatatgag tttaaaactt cagaatagaa acagtcaccg
      901 ctatttttgt agttcccacc aactgctcta ggtgatattg aactagtttt ctttttattc
      961 tctatgtcgt tttttagttt ttggaatcct tcaggaacat atccatatcg agatttggca
     1021 ttttctagat taacatcttt agctgttccg tctttatcta aaataataat tttgccatat
     1081 atgtatttta gttctttttc aatttctttt tcgtttaaag tttcaacgtt tttatctgca
     1141 atgttatttt tgttttgggc ttgagcttct ttgaaattaa aatccaagac cattgaaagt
     1201 atggttaaaa tacttaaaga tactactaaa atctttctta gtgatatact gttttgaatt
     1261 gcattcattg taaatgcccc cttgttttgt tatttaaatg aattcaatat aatattaaca
     1321 tataaaaaca aaggagttta atatgaataa gtttttttac tttttgatta ttttattatc
     1381 tgtattttta atttttaatt ttgttaattc gattttattt gataatcctt ttgacttttt
     1441 agaaagtttt atttattcat tggttttcac attaatttat ttaggtttag agggtcataa
     1501 aaagaagaag gaataggttg ttttttgaaa cgagtgtgaa cgagtttctt cttgtcttga
     1561 tactatatag aaataactcg attttatata tatagctgta actgttgata ttacagtgtt
     1621 taaacgtgtt tttgtgcgtg aaaggaaaat ttgacaataa aaaaccccag ttatattatt
     1681 aaggtgtcga atcttaaata atactggggg tctttttata tgcaatataa tactactaga
     1741 agtataaccg aaaatcaaga taataaaacg ttaaaagata tgacgaaaag tgggaaacaa
     1801 cgcccatgga gagaaaagaa aatagataat gtaagctatg cagatatact agaaatttta
     1861 aaaatcaaaa aggcttttaa tgtaaaacaa tgtggtaata ttttagaatt taagccaact
     1921 gatgaaggct atttgaagtt acataagaca tggttttgta aatcaaaatt atgtccggtt
     1981 tgtaattgga gacgtgctat gaaaaatagt tatcaagctc aaaaagtgat tgaaaaagta
     2041 attaaggaaa agccaaaagc acgttggttg tttttaacac tttcaacaaa aaatgcgata
     2101 gatggagata ctttagaaca aagtttgaag catctaacta aagcatttga taggttgagt
     2161 agatataaaa aggttaaaca aaatcttgtt ggatttatgc gttcaacaga agttaccgtt
     2221 aataaaaatg acggtagtta taatcagcac atgcatgttt tgttatgtgt tgaaaatgca
     2281 tattttagaa aaaaagagaa ttatataact caagaagaat gggttaattt atggcaaaga
     2341 gcattacaag ttgactatcg acctgttgct aatgttaaag cgatcaaacc gaatagaaaa
     2401 ggcgataaag acattgaatc ggcaatcaaa gagacctcaa aatattcggt taaatcatct
     2461 gattttttaa ctgatgatga tgaaaaaaat caagaaattg taagtgattt agaaaaaggt
     2521 ttgtatcgaa aacgtatgtt aagttatggt ggattgctta aacaaaaaca taaaatttta
     2581 aacttagacg atgtcgaaga tggtaatttg attaatgcaa gtgatgaaga taaaacaaca
     2641 gacgaagaag aaaaagcaca ttcaattacc gcaatttgga atttcgaaaa gcaaaattat
     2701 tatttaagac attagtgttg actaatgtct tttttgttga ttttttataa aaaagtactg
     2761 tcttattttt gtgacaaatg ctgtatgtag tgtcacaaaa ataagacaaa cgcaatatat
     2821 tgtgtcacaa aaataagaca gtacagcttt gtatgatatc actttaaaat accttaaaac
     2881 ccctggaatt tctggctttg ccagacctat catttttgaa tgatagcaaa ttctccttat
     2941 gctcttacgg agtttttaga gaaaaattaa aaattctcga tttttgataa aaaacgccct
     3001 gcaggaattt agaaaaacat gtggaagttt taaaggattt tatgctaatt tttaatttgc
     3061 atgtaaatgg gcagtgttaa aaaattagtc actggttttg ctgaaatttt tgtttgtgaa
     3121 attac
//
