LOCUS       NC_011997               2131 bp    DNA     circular CON 11-FEB-2024
DEFINITION  Macrococcoides caseolyticum JCSC5402 plasmid pMCCL3, complete
            sequence.
ACCESSION   NC_011997
VERSION     NC_011997.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00060930
            Assembly: GCF_000010585.1
KEYWORDS    RefSeq.
SOURCE      Macrococcoides caseolyticum JCSC5402
  ORGANISM  Macrococcoides caseolyticum JCSC5402
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Macrococcoides.
REFERENCE   1
  AUTHORS   Baba,T., Kuwahara-Arai,K., Uchiyama,I., Takeuchi,F., Ito,T. and
            Hiramatsu,K.
  TITLE     Complete genome sequence of Macrococcus caseolyticus strain
            JCSCS5402, [corrected] reflecting the ancestral genome of the
            human-pathogenic staphylococci
  JOURNAL   J Bacteriol 191 (4), 1180-1190 (2009)
   PUBMED   19074389
  REMARK    Erratum:[J Bacteriol. 2009 May;191(10):3429]
REFERENCE   2  (bases 1 to 2131)
  AUTHORS   Baba,T., Kuwahara-Arai,K., Takeuchi,F. and Hiramatsu,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JUL-2007) Contact:Tadashi Baba Juntendo University
            School of Medicine, Department of Bacteriology; 2-1-1 Hongo, Bunkyo,
            Tokyo 113-8421, Japan
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/11/2024 01:05:44
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,390
            CDSs (total)                      :: 2,323
            Genes (coding)                    :: 2,282
            CDSs (with protein)               :: 2,282
            Genes (RNA)                       :: 67
            rRNAs                             :: 5, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 4, 4 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 23 of 41
            Pseudo Genes (incomplete)         :: 22 of 41
            Pseudo Genes (internal stop)      :: 2 of 41
            Pseudo Genes (multiple problems)  :: 5 of 41
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            AP009487.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2131
                     /organism="Macrococcoides caseolyticum JCSC5402"
                     /mol_type="genomic DNA"
                     /strain="JCSC5402"
                     /db_xref="taxon:458233"
                     /plasmid="pMCCL3"
     gene            1..996
                     /locus_tag="MCCL_RS11485"
                     /old_locus_tag="MCCL_plsC0001"
     CDS             1..996
                     /locus_tag="MCCL_RS11485"
                     /old_locus_tag="MCCL_plsC0001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001199895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_012655909.1"
                     /translation="MQSYDTREIRENQDTEILRDVSKSGKERPWKEKKLANVTYADLLH
                     VLKIKKAHNVRSCGQVLEFKPTDEGYLKLYKTWFCKSKLCPVCNWRRAMKNSYQAQRVV
                     EEVIKEKPKARWLFITLSTKNAVDGQTLNKAVSEMTKAFDRLMRYKKISKNLIGFMRTT
                     EVTVNSNDGSYNQHLHVLLCVEPSYFNSKENYIEQKEWIKFWKRALKINYEPVVHVKAI
                     TPNRKKDSAIVSAIKETSKYSVKESDYLTDDEEKNLEIISDLEEGLYKKRMIAYGGLLK
                     IKHKELNLDDAEDGNLIQTSDEEKINSEEEKAHSIIAIWNFEKQNYFLKH"
                     /name="protein rep"
     Typing          2..983
                     /name="rep_cluster_1074"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 atgcaatctt atgatacaag agaaattaga gaaaatcaag acactgaaat tttacgtgat
       61 gtttcaaaaa gtgggaaaga acgcccatgg aaagaaaaga aattagcgaa tgtaacttac
      121 gctgatctat tacatgtctt aaaaattaaa aaagctcata atgtgcgtag ttgtggtcaa
      181 gtgcttgagt ttaagccgac tgatgaaggt tatttaaaat tatataagac atggttttgt
      241 aaatctaaat tatgtccggt gtgtaactgg aggcgtgcaa tgaaaaatag ttatcaagcc
      301 cagcgtgtag ttgaagaagt tattaaagaa aaaccgaaag caagatggct atttattacg
      361 ctttcaacaa aaaatgcagt ggatggacag actttaaata aagcagtttc tgagatgacg
      421 aaagcattcg atcgtttgat gcgatataaa aaaatctcta aaaatttaat tgggtttatg
      481 cgaacaacag aagtaacagt taattcaaat gacggaagtt acaatcagca tttacatgtt
      541 ttactctgtg tcgagccgag ttattttaat agcaaagaaa actatatcga gcaaaaagaa
      601 tggataaaat tttggaaacg agcattaaaa ataaattatg aacctgttgt tcacgtcaaa
      661 gcaatcactc cgaacagaaa aaaagattca gcaatcgtgt ctgcgattaa agagacatca
      721 aaatattctg ttaaggaatc agattattta acagatgacg aagaaaaaaa tttagaaatt
      781 atttcagacc tggaagaagg actttataaa aaaagaatga ttgcttacgg tggtcttttg
      841 aaaataaaac acaaagaatt aaatttagat gatgctgaag atggaaattt gattcagaca
      901 tctgacgaag aaaaaataaa ttctgaagaa gaaaaagctc actcgataat tgcaatttgg
      961 aattttgaaa aacaaaatta ttttttgaag cattgaaaat ttttcaatgc ttttttatat
     1021 gtatagcata cgtacaaaaa ttctatacgt acactatacg tatgcataca ctatacgtat
     1081 gcatatactg tatgtatacg tattatatgc ataactatac gtatagtgta cgtatgagat
     1141 aaagaacatg gtggcactat ttttaagggt aaataactcg gcactgccga gttcaccacg
     1201 ttttggctct gccaaaacat caaagtggtg gcattacccc ttatgctcat gttctaaaaa
     1261 taactagaat gctcttattt gcctcatatt ttgattttaa gagcatgttt ttaaataagg
     1321 tatttaaaat actttgagaa ttaaaacgat ccttctacgc tcaaatttga gctaatgaga
     1381 taaaaaacgg aagtaatcta taaaattttg ggggactttt atgccgagaa aacttttgat
     1441 gtggaggaga ccccccaggt acactaagag ccgttttcgg cgaggaggta gcgtcagcta
     1501 tcaactcgac ggaatacgag gtcttggggg tctgggggag cgtcagcgtg tcagaggctc
     1561 catgtcaaaa ggaaattgga ataaaaaaca aagggagatg aaaaaatgta ttattctagc
     1621 gttgaagaag aaagagaaaa cagagaaaga tttcaaagag taaaagacta ttattttaat
     1681 agctttaaag aaaaaatgcc aaagttcaat aagggcatgt ggtatttata tattttaaaa
     1741 acctgaactg atcctaaaat ttgattttta atttttgggt cagtttttgc atttttcttg
     1801 ctgaatttgt tcgctatgtt atgtaaacta gaaaaacatg gtcagagggg ctagaaactc
     1861 ttattttcca acggaaaata agagtttctt cttgtcttga tactattaga aataattcta
     1921 ttttttaaaa taggctgtaa cccttgtggc tgtaaggttg aggtagattt tttggggtga
     1981 aagaaaattt gacataaaaa aacctcagta ttatgattag attgtcgaga aataaccaaa
     2041 aatacggagg tttttttatg cttataatcc caaagaaaag ttcgttggtt gtttttttaa
     2101 tgctaaatcc caatgaaggg agcattaatt a
//
