LOCUS       NC_011897               4270 bp    DNA     circular CON 04-MAY-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Bovismorbificans plasmid
            p2007057, complete sequence.
ACCESSION   NC_011897
VERSION     NC_011897.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14225332
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Bovismorbificans
  ORGANISM  Salmonella enterica subsp. enterica serovar Bovismorbificans
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4270)
  AUTHORS   Cavaco,L.M., Hasman,H., Xia,S. and Aarestrup,F.M.
  TITLE     qnrD, a novel gene conferring transferable quinolone resistance in
            Salmonella enterica serovar Kentucky and Bovismorbificans strains of
            human origin
  JOURNAL   Antimicrob Agents Chemother 53 (2), 603-608 (2009)
   PUBMED   19029321
REFERENCE   2  (bases 1 to 4270)
  AUTHORS   Cavaco,L.M., Hasman,H. and Aarestrup,F.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-SEP-2008) Microbiology and Risk Assessment, National
            Food Institute, Technical University of Denmark, Bulowsvej 27 room
            B25, Copenhagen, Copenhagen V 1790, Denmark
  REMARK    Sequence update by submitter
REFERENCE   3  (bases 1 to 4270)
  AUTHORS   Cavaco,L.M., Hasman,H. and Aarestrup,F.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-MAY-2008) Microbiology and Risk Assessment, National
            Food Institute, Technical University of Denmark, Bulowsvej 27 room
            B25, Copenhagen, Copenhagen V 1790, Denmark
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Name              :: GCF_009952675.2-RS_2024_05_04
            Annotation Date              :: 05/04/2024 05:23:23
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.7
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 4
            CDSs (total)                 :: 4
            Genes (coding)               :: 4
            CDSs (with protein)          :: 4
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            FJ228229.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4270
                     /organism="Salmonella enterica subsp. enterica serovar
                     Bovismorbificans"
                     /mol_type="genomic DNA"
                     /strain="GSS-HN-2007057"
                     /serovar="Bovismorbificans"
                     /sub_species="enterica"
                     /db_xref="taxon:58097"
                     /plasmid="p2007057"
     gene            554..1198
                     /locus_tag="HS556_RS00005"
                     /old_locus_tag="p2007057_p1"
     CDS             554..1198
                     /locus_tag="HS556_RS00005"
                     /old_locus_tag="p2007057_p1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032495680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolone resistance pentapeptide repeat protein
                     QnrD1"
                     /protein_id="WP_012634451.1"
                     /translation="MEKHFINEKFSRDQFTGNRVKNIAFSNCDFSGVDLTDTEFVDCSF
                     YDRNSLEGCDFNRAKLKNASFKSCDLSMSNFKNISALGLEISECLAQGADFRGANFMNM
                     ITTRSWFCSAYITKTNLSYANFSRVILEKCELWENRWNGTVITGAVFRGSDLSCGEFSS
                     FDWSLADFTGCDLTGGALGELDARRINLDGVKLDGEQALQLVESLGVIVHR"
                     /name="quinolone resistance pentapeptide repeat protein
                     QnrD1"
     gene            complement(1820..2206)
                     /locus_tag="HS556_RS00010"
     CDS             complement(1820..2206)
                     /locus_tag="HS556_RS00010"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_058671329.1"
                     /translation="MRISNVEWLKKRIGFIRKLGEKTTRQRQIIDLLDDEASLSETDRR
                     LLHVLATAEKNELQEQDAAQKKAVQARISGQKNRRERNHKLFLAAGLMIDAGLVDTKTG
                     ELNFDSEKLLTALKRVRCDLETSV"
                     /name="hypothetical protein"
     gene            2374..3309
                     /locus_tag="HS556_RS00015"
                     /old_locus_tag="p2007057_p4"
     CDS             2374..3309
                     /locus_tag="HS556_RS00015"
                     /old_locus_tag="p2007057_p4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016235474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="WP_072206570.1"
                     /translation="MATYHLSVKFGGKGKALAHANYITREDKFSQRKDLEHTEHGNMPE
                     WAKDDPAHFWQAADAFERANGSTYREIEIALPRELNEAQRLELVRDFVKQETGGQHTYS
                     FAIHNPQASIDGGEQPHAHIMMSQRVDDGIKRSPEQYFRRYNAKFPARGGARKDSGHNL
                     TPTEQKQALKALRERWERTHNAHMKRYGFEQGFIDSRSLKAQGIDRKPEQHLGFEAAGR
                     LDDSQRQDIKDSRTFSVVDVPEQAKHIDHSDRSWMNASGIEVNRKELVRSLTHDISQQY
                     GREMAARVTKQGNVEIERVKSLSRGFSISR"
                     /name="MobA/MobL family protein"
     gene            3312..3842
                     /locus_tag="HS556_RS00020"
                     /old_locus_tag="p2007057_p5"
     CDS             3312..3842
                     /locus_tag="HS556_RS00020"
                     /old_locus_tag="p2007057_p5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000168766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_012634455.1"
                     /translation="MASTEEKLLTLLLSAEHLKEAAKEQQKAVADSLAVARETLKGYRE
                     ISDSVAQQVRDEVRQEVQKMDVAGLIGERISADFQRLEKSVGNMKINADALDKEISIIR
                     SNIIAEYNTLRGYSWKWFAGVAVAFVVLIFATSWFVKTELQDNYNASAAVYQKVADLEK
                     LLTTEQKPEKKKN"
                     /name="hypothetical protein"
     ARG             555..1195
                     /name="qnrD1"
                     /gene="qnrD1"
                     /gene_name="quinolone resistance pentapeptide repeat
                     protein QnrD1"
                     /tool="amrfinderplus"
                     /drug_class="QUINOLONE"
                     /identity="100.0"
                     /coverage="100.0"
     Typing          305..460
                     /name="Col3M"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.089"
                     /coverage="100.0"
                     /evalue="2.29e-71"
     Typing          2375..3306
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.678"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 atcactcggt tcgcggggct acagcgtttc tgtgtccgaa accgaacgat tacgtacagc
       61 atgtagacaa catgtccgaa agtaagcaaa accattaacg gacagccgga tcatttcgta
      121 catcccttac ggtcaggggt tcgcgctcaa tggaacgaaa tcacccgtta gcttaaaacg
      181 cttaacgtag gataatttcc tttttccaag cggacccgta ctcggttggt caaatcgctt
      241 cttgccacaa aacaagtttg tgtctttcag cgatttcgca tcgttttact tgtcagtttg
      301 aatgatgtta aaaacgcact cagaagctcg caaaaccgtt ctaaactttc agcgtagatt
      361 tgggtgtttt atagggtgat agtgtcttaa aatcgttttg aggggcttta gtggggatga
      421 acgggcggtt ttcgctaact aactcgcccg tttaacataa aagggattgt atgaatcaat
      481 tttagctaga gtttaaggtt gttcaaatta atgtacaatg attgcactgt ataaataacc
      541 aggtgtagca tgtatggaaa agcactttat caatgaaaag ttttcacgag atcaatttac
      601 ggggaataga gttaaaaata ttgccttttc aaattgtgat ttttcagggg ttgatttaac
      661 tgatactgaa tttgttgatt gtagttttta cgacaggaat agcttggaag ggtgtgattt
      721 taatagagcc aaactaaaaa acgctagctt taaaagctgc gatttatcaa tgagtaattt
      781 taaaaacatt agcgccttag gtcttgaaat tagtgagtgt ttagctcaag gagctgattt
      841 tcgaggggct aattttatga atatgataac tacaaggtca tggttttgta gtgcttatat
      901 aaccaagaca aatcttagtt acgctaattt ttctagagtc atattagaaa agtgcgaact
      961 gtgggaaaat cgctggaatg gcactgtgat aactggcgcc gtgtttcgtg gctccgatct
     1021 ttcttgtggg gagttttcat cgtttgattg gtctttggct gattttactg gttgtgattt
     1081 aacgggtggg gcgcttggcg agcttgatgc aaggcgaatt aatttagatg gagtgaagtt
     1141 ggatggagag caggcgcttc agcttgttga gagtttaggt gttattgttc accgataaaa
     1201 tctaggtaaa aaacgcctaa tgccccaatg tggtactaat caaaacggag cgaagcgaca
     1261 tcttcatctt gtctttgctt ttctccatga tcagttattg ggtcatggtc tcttagctcg
     1321 ttaatctggc taagtttggt taggttgggc ttctttcgac acttcgcaat ccaagaaatc
     1381 cctagtccgt tgattggtgc tcttatcagg tacgcactgt aatctttcga taccgcagcg
     1441 tgattcggag gcagagccgg aatttcgttt tccggtacgt tttactacca caatttgcct
     1501 gtttatcctt tcggagaccg ggctaagtcc gagtcaatca agtggtgcat ttgagttaat
     1561 gtcgttgaat ggttttaagg aagtagtgac aagctagctt cccattgcta agattggatt
     1621 gtctaggtct gatcttagca acgaatgcac cgaatcagat tagcagagcc ggagtgatgt
     1681 cacaatcatt tcggctctgc gctttctgaa cttaagcaaa aaatcccctc gtatttcaat
     1741 ctgcaacgct cgccgcaaga tgcaaactgg ttttgcatcg aggaagcgtc atatcactga
     1801 atccttgcag aatgcacggt cacaccgatg tttccagatc acagcgtacc cgtttcagcg
     1861 cggtcagtaa tttttcagag tcaaaattca actcacccgt ttttgtatca accagtcccg
     1921 cgtcaatcat cagtccggca gccaagaaca gtttgtgatt acgttccctg cggtttttct
     1981 gacctgaaat ccgtgcctga accgcctttt tctgcgcggc atcctgttcc tgcaactcgt
     2041 ttttttcagc ggttgccaga acgtggagca gtcgcctgtc agtctcactg agcgaagcct
     2101 catcatccag caggtcgata atctgccgtt gccgtgttgt tttctccccc agttttctga
     2161 tgaagcctat gcgcttttta agccattcga cgttactgat ccgcatcgtt taacttcccc
     2221 atcccgatat ttccgatggt gaaagtatat aacttgcggt cagaagtcgc atgacttatc
     2281 tttactcata attcttcaaa ttagagtaaa gcgcacttat atgtttctcc ctgcgggcag
     2341 aaacacgtgc gtaaaaccaa gggcaaaaac atcatggcaa cctatcatct cagcgtgaaa
     2401 tttggcggca agggtaaagc ccttgctcat gccaattaca tcacgcggga agataagttc
     2461 agtcagcgaa aagatctcga acacaccgag cacggcaata tgccggaatg ggcgaaagat
     2521 gaccccgccc atttctggca ggctgcggat gcgttcgaac gtgccaacgg ttcaacgtac
     2581 cgggaaatcg agatagcact accccgtgaa ctgaacgaag cgcagcggct ggagcttgtc
     2641 agggattttg tgaagcagga aacgggcggt caacatacgt attcgtttgc gattcacaat
     2701 ccgcaagcca gcattgacgg cggcgaacag ccgcacgccc atatcatgat gagccagcgt
     2761 gttgatgacg gtattaagcg cagcccagag cagtatttca ggcgctataa cgccaaattt
     2821 ccggcgcgtg gcggcgcgcg caaggactca gggcataatt taacccctac agaacaaaaa
     2881 caggcactga aagccctgcg ggagcgctgg gagcgtacgc acaacgcgca tatgaaacga
     2941 tatggctttg agcagggttt tattgatagc cggtcactga aagcacaggg tatagaccgg
     3001 aaaccggaac agcatctcgg ttttgaagca gccggacgac tggacgacag ccagaggcag
     3061 gatattaaag acagccggac gttttcagtc gtggatgtgc ctgaacaggc gaagcatatc
     3121 gaccacagcg accgtagctg gatgaatgcc agcggtatcg aggtaaaccg gaaggaactg
     3181 gtcagatctc tgacgcatga tatctcgcag cagtacgggc gggagatggc tgcacgggtc
     3241 acaaaacagg gaaatgttga aatagagcgc gtgaaatccc tgtcacgcgg attttccata
     3301 agcaggtaac tatggcgagc accgaagaaa aacttctcac actcctgctg tcggcggagc
     3361 atctgaaaga ggccgcaaaa gagcagcaga aagccgtggc ggattcgctg gcggtggcaa
     3421 gggaaaccct gaaaggctac cgggaaatat cagacagtgt ggcacagcag gtacgggatg
     3481 aagtccggca ggaagtgcag aaaatggatg ttgcggggct gattggcgag cgtatcagcg
     3541 ctgattttca gcgtctggaa aaatccgtcg ggaacatgaa aatcaatgcg gacgcgctgg
     3601 acaaggaaat ttccattatc cgcagcaata tcatcgcgga gtacaacacg ctgcggggtt
     3661 acagctggaa gtggtttgca ggggttgcgg ttgcctttgt cgtactgata tttgccacaa
     3721 gctggtttgt gaaaacggaa ctacaggaca attacaacgc gtctgctgcc gtctatcaga
     3781 aagtggcaga ccttgaaaag ctgctgacaa cggaacagaa accggaaaag aaaaagaact
     3841 gacgcgctgc gcttgtccaa cgcctcacgt tcgcacaata aattgcgcac ccgttcaccg
     3901 ttttcagccg ggtttggggc gtcttttgag acttccggcc tgaattcagg ccggaagttc
     3961 tcgccagtca gtcaggtgca tggttatgca tggggctgaa aatcacggta tgcgattctg
     4021 agcggttttc ggtgagaaga cgggggtttt tatggctcag gacgtaaaac cgccctgagc
     4081 gcgtttcagc ggtgcgcgta atgacgcgtt atggtaaatc ggtgccacag gcgtaagtat
     4141 ctgctaagga tctttttgtt gattcttttt taagagcata atgagattat ataaattgat
     4201 tttggggtcc gcttggaaaa gggaaaataa cctacgctaa gactactttt taaccaatcg
     4261 gctattggat
//
