LOCUS       NC_011082               3373 bp    DNA     circular CON 27-MAR-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476
            plasmid pSL476_3, complete sequence.
ACCESSION   NC_011082
VERSION     NC_011082.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02604067
            Assembly: GCF_000020705.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Heidelberg str. SL476
  ORGANISM  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3373)
  AUTHORS   Fricke,W.F., Mammel,M.K., McDermott,P.F., Tartera,C., White,D.G.,
            Leclerc,J.E., Ravel,J. and Cebula,T.A.
  TITLE     Comparative genomics of 28 Salmonella enterica isolates: evidence
            for CRISPR-mediated adaptive sublineage evolution
  JOURNAL   J Bacteriol 193 (14), 3556-3568 (2011)
   PUBMED   21602358
REFERENCE   2  (bases 1 to 3373)
  AUTHORS   Ravel,J., Fricke,W.F., White,D., McDermott,P., Mammel,M.,
            Rosovitz,M., Leclerc,J., Cebula,T. and Sebastian,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JUL-2008) J. Craig Venter Institute, 9704 Medical
            Center Drive, Rockville, MD 20850, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000020705.1-RS_2024_03_27
            Annotation Date                   :: 03/27/2024 01:23:03
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,877
            CDSs (total)                      :: 4,755
            Genes (coding)                    :: 4,633
            CDSs (with protein)               :: 4,633
            Genes (RNA)                       :: 122
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 122
            CDSs (without protein)            :: 122
            Pseudo Genes (ambiguous residues) :: 0 of 122
            Pseudo Genes (frameshifted)       :: 47 of 122
            Pseudo Genes (incomplete)         :: 85 of 122
            Pseudo Genes (internal stop)      :: 27 of 122
            Pseudo Genes (multiple problems)  :: 31 of 122
            Pseudo Genes (short protein)      :: 1 of 122
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP001119.1.
            The sequenced strain has been deposited at the Salmonella Genetic
            Stock Center at the University of Calgary under the care of Dr.
            K.E. Sanderson.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3373
                     /organism="Salmonella enterica subsp. enterica serovar
                     Heidelberg str. SL476"
                     /mol_type="genomic DNA"
                     /strain="SL476"
                     /serovar="Heidelberg"
                     /sub_species="enterica"
                     /db_xref="taxon:454169"
                     /plasmid="pSL476_3"
     gene            complement(182..373)
                     /locus_tag="SEHA_RS00520"
                     /old_locus_tag="SeHA_B0001"
     CDS             complement(182..373)
                     /locus_tag="SEHA_RS00520"
                     /old_locus_tag="SeHA_B0001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_000165979.1"
                     /translation="MTKQEKTALNMARFIRSQTLTLLEKLNDLDADEQADICESLHDHA
                     DELYRSCLARFGDDGESN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            437..760
                     /locus_tag="SEHA_RS00525"
     CDS             437..760
                     /locus_tag="SEHA_RS00525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_024132211.1"
                     /translation="MLTIRVTDEEHARLLERCEGKRLAEWMRRVCLGEPVARTGKLPTL
                     SPPLLRHLAAIGNNLNQTARKVNSGQWSSIDRVHVVAALMAIEGELRQLRQAVREQGVR
                     DDS"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            969..>1406
                     /locus_tag="SEHA_RS26895"
                     /pseudo=""
     CDS             969..>1406
                     /locus_tag="SEHA_RS26895"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            1438..1998
                     /locus_tag="SEHA_RS26410"
     CDS             1438..1998
                     /locus_tag="SEHA_RS26410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000067488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_000067487.1"
                     /translation="MSNLLQMGTDFEKKLKERAASTENMLNSEFRKLEESVDKALSLNR
                     QKIRDAISEHTTSVKKQLDTLSTTVSMQFSTTEAELSRQQKKLLWRVIKGRILFPALTA
                     LSVTGGIFLGCWGLMEWQESKIAKNILTIREQENTLAKLEAKTWGVTFVNGENGKFLVL
                     PDGVKGENTWTVGDKNAVRLVRE"
                     /name="MbeB family mobilization protein"
     gene            2005..2238
                     /locus_tag="SEHA_RS26415"
     CDS             2005..2238
                     /locus_tag="SEHA_RS26415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137389.1"
                     /translation="MTELEGHLLNALEHLQQDYMRRLNEWESAFAELQKMHEVTQRNNA
                     ILNERVVILSQQVQRLAGQVDRLSRLFIANNS"
                     /name="MbeD family mobilization/exclusion protein"
     Typing          18..101
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="87.059"
                     /coverage="95.0"
                     /evalue="8.83e-18"
     Typing          751..2321
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="92.817"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gcacttccca tccatgtctg caccgatgca aaatgagata agccagtata cacatcgcta
       61 tcgctctgtg aactgggtca gggctgcgcc ccgacacccg cactgacgcg ccctggcggg
      121 cttgtctgct cccggcatcc gctcacaggc aagctgtgaa cgtctccggg agctgcatgt
      181 ttcagttgct ttcaccgtca tcgccgaagc gtgcgaggca actgcggtag agttcgtcgg
      241 cgtggtcgtg aagtgattcg cagatgtctg cctgttcgtc cgcgtccaga tcgttgagtt
      301 tttccagcag ggttagcgtc tggcttctga taaagcgagc catgttaagg gctgtttttt
      361 cctgtttggt catggtctta aggctccttg tatgggggat ttgttagggg gaatgatacc
      421 gatgaaacgc gagaagatgc tcacgatacg ggttaccgat gaggagcacg cccggttact
      481 ggaacgctgc gagggtaaac gactggcgga atggatgcgg cgggtctgtc tgggggagcc
      541 ggttgcacgc acaggaaaac tgccgacact atcgccgcca ttgctgcggc atctggctgc
      601 catcgggaac aacctgaacc agacagcccg gaaggtgaac agcggccagt ggtcttcgat
      661 tgaccgggtt catgtggtgg ccgcactgat ggccatcgag ggtgaattgc gccagttgcg
      721 gcaggctgtc agggaacagg gggtacggga tgatagttaa atttcatgcc agggggaaag
      781 gcggtggaag tggcccggtc gattacctgc tggggcggga gcgtaaccgc gaaggcgcaa
      841 cggtgctccg gggtaacccg gaagaagtgc gggaactcat tgattccacg ccattctcga
      901 agaaatacac ttcaggcgtt ctgtcgttcg cggagaagga gttaccgccg ggtgaacgcg
      961 aaagagtgat gacgagcttt gagcgtgttc ttatgcccgg tctcgaaaaa gaccagtaca
     1021 gcattctctg ggtggaacac caggataagg ggcggctcga actgaatttt gtcatcccga
     1081 acatggagct acagagcggt aagcgcctcc agccgtacta cgaccgcgcg gacaggccga
     1141 ggataaatgc ctggcagacg ctggttaatc atcattacgg gctgcgtgac ccgaacgcac
     1201 cggagaacag acggacgctt gtcacgccaa ataatctgcc aaaagcgaaa caggaggccg
     1261 cagaagcgat tacacggggt cttgaggctc tttaccatgc cggagcaata aaaacgcgtc
     1321 aggatgtcac agaggcgctt acagcggcag gttttgaggt ggtgaggaca accaaaagca
     1381 gcatcagtat tgccgacccg gagggggggc ggaatctcag gctaaagggg gcgctgtatg
     1441 agcaatcttt tacaaatggg aacagacttc gagaagaaac tgaaagagcg agccgcttct
     1501 accgagaaca tgctgaacag cgagttcagg aagctcgaag agtctgtaga caaggcattg
     1561 agcttaaaca ggcagaaaat cagagacgct atcagcgaac atacaacatc cgtgaaaaag
     1621 caactggata cgctgagcac caccgtgagc atgcagttca gcaccacaga ggccgaactg
     1681 tcccggcagc agaaaaaact gctctggcgg gtgatcaaag ggcggatact gtttccggcg
     1741 ctgaccgcgc tcagcgtcac gggcggcatt ttcctggggt gctgggggct gatggagtgg
     1801 caggaaagca agattgcgaa aaatatcctg actatcagag agcaggaaaa cacgctggcg
     1861 aaactcgagg caaaaacctg gggggtgacg ttcgtcaatg gcgagaacgg gaaatttctg
     1921 gtgttgccgg acggggtgaa aggggaaaac acctggacgg tgggcgacaa gaacgccgtg
     1981 aggctggtca gggagtaaac gagtatgacg gaactggaag ggcatttgct gaacgcctta
     2041 gagcatttgc aacaggacta tatgcggcgg ctgaacgagt gggagagcgc cttcgcggaa
     2101 ttgcagaaga tgcacgaggt tacgcaacgg aacaacgcga tactgaacga gcgcgtcgtg
     2161 atattgagtc agcaggtgca gagattagcc gggcaagtgg atcgcttgag tcggttattt
     2221 atcgcgaaca acagctaagg gatgaacagg agcgtgcccg gtacagacat gaggtacagg
     2281 aacgcgcggc acgggttcgg agtgggccat caatggagat gtgaccgggg aagtgacgaa
     2341 atcttgccat tttgaccagt tcgacggctg gggcgagcga aacaaatcgt gtgccgtatt
     2401 tgtgcatagc tatgcaacat cctgaaaacg catttcacgc gtttttgggg attcagccag
     2461 gggaaaacat ggttttttta ctttttgagc gtaaagacgt gaaaaatctc gttattgcac
     2521 ttgcgatctt tcgtcggcgg gcgtagaacg aaaacagctc gccaggaagg cgagctgttt
     2581 cgggttcatt gaggtctctg acctcctcaa tgttcctgtg gaaactgttg agatccacaa
     2641 cagaaaccag ttcattcagt ttgcatgagc cttctgtatt cttcaagaat ttttcaacag
     2701 cacagtctcc caggaacccc gaaaaaaacc tgtttttgca gatacttgcg tatttgcgag
     2761 aatcgtttgc ggttggggga gctgtgacga cggcgaccgc acgcgtgaga gttccgctac
     2821 cggcgcagag agtttcatcg acagcggaca cctgatgagt tgccacaaaa accgtatgta
     2881 gcgcggctag attggttgag ttagaccttg gcggcagttc ccggtatgtg gtggcgtgac
     2941 gggtgagatg gtgcggcgaa gacgcatacg tcacgcaggc gcgggttctt ccactgacgc
     3001 gccccgtgat cgatggcctt ggctccgtcc ggcatatcga gagcggcaaa ctacccgtcc
     3061 cttcactggg aggggtgagt tgttgccgtt ccctccaacc tttcaccatc cggcatatcg
     3121 cacgatccca tgtgcaccgc aactcctgat aactccagtg caaaaaaaaa aaacggatct
     3181 gcatcacaac gagagtgatc ccaccgctcg ccgcagcccc agcgaccgaa cgtagtgagc
     3241 gagtgggcga ggaagcggaa gagtcacaga tgcaagcatt gtgcacttac gcgcctgtgc
     3301 cagtgtccgc gtgtgtgctg tttatcgggt gcgctgtttt tacatctgtg cggcttttta
     3361 ctcctgacat ggt
//
