LOCUS       NC_010796               4241 bp    DNA     circular CON 14-MAR-2024
DEFINITION  Serratia marcescens plasmid pRK10, complete sequence.
ACCESSION   NC_010796
VERSION     NC_010796.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14225304
KEYWORDS    RefSeq.
SOURCE      Serratia marcescens
  ORGANISM  Serratia marcescens
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Yersiniaceae; Serratia.
REFERENCE   1  (bases 1 to 4241)
  AUTHORS   Syed Ibrahim,K., Bakkiyaraj,D., James,R., Ganesh Babu,T. and Karutha
            Pandian,S.T.
  TITLE     Isolation and sequence analysis of a small cryptic plasmid pRK10
            from a corrosion inhibitor degrading strain Serratia marcescens ACE2
  JOURNAL   Plasmid 62 (3), 183-190 (2009)
   PUBMED   19699230
REFERENCE   2  (bases 1 to 4241)
  AUTHORS   Roswin,J., Ganesh Babu,T., Syed Ibrahim,K., Rajasekar,A.,
            Maruthamuthu,S. and Karutha Pandian,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-MAY-2008) Biotechnology, Alagappa University, Alagappa
            Nagar, Karaikudi, Tamil Nadu 630 003, India
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009952335.2-RS_2024_03_14
            Annotation Date                   :: 03/14/2024 02:52:34
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6
            CDSs (total)                      :: 6
            Genes (coding)                    :: 5
            CDSs (with protein)               :: 5
            Genes (RNA)                       :: 0
            tRNAs                             :: 0
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 1
            CDSs (without protein)            :: 1
            Pseudo Genes (ambiguous residues) :: 0 of 1
            Pseudo Genes (frameshifted)       :: 0 of 1
            Pseudo Genes (incomplete)         :: 1 of 1
            Pseudo Genes (internal stop)      :: 0 of 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            EU697813.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4241
                     /organism="Serratia marcescens"
                     /mol_type="genomic DNA"
                     /strain="ACE2"
                     /db_xref="taxon:615"
                     /plasmid="pRK10"
     gene            complement(1..1071)
                     /locus_tag="HS515_RS00005"
                     /old_locus_tag="pRK10_p1"
     CDS             complement(1..1071)
                     /locus_tag="HS515_RS00005"
                     /old_locus_tag="pRK10_p1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000646535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent alcohol dehydrogenase family
                     protein"
                     /protein_id="WP_012464819.1"
                     /translation="MKAMVFYGENDVRFEERKKPEIINPGDAIIRMIKTTICGTDLGIL
                     KGKNPEIEKNAKEKTGSFNGRILGHEGVGIIEEIGSAVKNFKIGDKVIISCVSRCGTCD
                     NCQKQLYAHCRNDGGWIMGYMIDGTQAEFVRTPYADNSLYLFPDELNDDAGVLLSDALP
                     TAHEIGIQNGMVKPGDTVAIVGAGPVGMSCLLTGMLYSPSQLIMIDMDENRLAMAKDMG
                     ATHTINSAKENAINRVMELTNQRGVDCAIEAVGIEPTWNICQNIIKEGGHLANVGVHGN
                     PVSFAIEKLWIKNLTITTGLVNANTTGMLMKTCCSGKLATEKLATHHFNFNDIEKAYDV
                     FKHAADEKAMKVMINF"
                     /name="zinc-dependent alcohol dehydrogenase family protein"
     gene            complement(1440..1553)
                     /locus_tag="HS515_RS00035"
     CDS             complement(1440..1553)
                     /locus_tag="HS515_RS00035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_071789001.1"
                     /translation="MHEPPVQSDCCALSGNYRLESNPVRHAKAPLAAATGN"
                     /name="replication initiation protein"
     gene            2193..2516
                     /locus_tag="HS515_RS00010"
                     /old_locus_tag="pRK10_p2"
     CDS             2193..2516
                     /locus_tag="HS515_RS00010"
                     /old_locus_tag="pRK10_p2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_012464820.1"
                     /translation="MLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPARACKLPSI
                     SPALLRQLAGMGNNLNQIARQVNAGGGSAHDRVQIVSALMAINAGLERLRHAVLEKGAD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            2725..>3159
                     /locus_tag="HS515_RS00030"
                     /pseudo=""
     CDS             2725..>3159
                     /locus_tag="HS515_RS00030"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            3194..3679
                     /locus_tag="HS515_RS00020"
                     /old_locus_tag="pRK10_p4"
     CDS             3194..3679
                     /locus_tag="HS515_RS00020"
                     /old_locus_tag="pRK10_p4"
                     /inference="COORDINATES: protein motif:HMM:NF016710.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_012464822.1"
                     /translation="MNSLLTLAKDLEQKSKAQQQSTGEMLKAAFSEHEKSVRAELSESE
                     KRISAAILDHDRKLSSAMSQRTKGMLRMVSQTWLTIVLVSALLIASSAGILWWQSQQIL
                     DNYTTIREQKSTQAMLSERNSGVQLSTCGEQRRRCVKVNPEAGRFGEDSSWMILAGK"
                     /name="MbeB family mobilization protein"
     gene            3683..3892
                     /locus_tag="HS515_RS00025"
                     /old_locus_tag="pRK10_p5"
     CDS             3683..3892
                     /locus_tag="HS515_RS00025"
                     /old_locus_tag="pRK10_p5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014538403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_012464823.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWESAFAEWRTMSGLMQRENA
                     ALSERVTGLSRQVQSLSEQLRRLS"
                     /name="MbeD family mobilization/exclusion protein"
     Typing          2003..2085
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="3.79e-36"
     Typing          complement(1441..1918)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.683"
                     /coverage="92.0"
                     /evalue="4.61e-163"
     Typing          2507..4002
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="93.387"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ttaaaaatta atcataactt tcattgcttt ttcatcagcg gcatgtttaa aaacatcata
       61 ggctttttct atatcgttaa aattaaaatg atgagtggcg agtttttctg ttgctagttt
      121 tcctgagcag caggttttca ttaacattcc tgttgtattt gcattaacga gacctgttgt
      181 tattgtcagg ttttttatcc acaacttctc gatagcaaaa ctcacagggt tcccatgaac
      241 accaacgttt gctaaatgcc cgccttcttt tataatattt tgacaaatat tccatgttgg
      301 ttcgattcca actgcttcga ttgcacaatc gacaccacgc tggtttgtca attccataac
      361 cctattaata gcgttttctt ttgcagagtt aatagtatga gttgccccca tatctttagc
      421 cattgccaaa cggttttcat ccatatcgat catgatcaac tgcgatgggg aataaagcat
      481 gccggtgagt aggcaactca ttccaacagg acccgcccca acaatagcaa cagtgtcacc
      541 aggctttacc attccattct ggatccctat ctcgtgggct gtaggtagtg catcagaaag
      601 taaaactccg gcatcgtcat ttaattcatc agggaataag taaagagagt tgtctgcata
      661 tggtgttctg acgaactcag cttgagttcc atcaatcata taacccataa tccaaccacc
      721 atcatttcta caatgcgcat ataattgttt ttgacaatta tcgcaggtgc cgcaacgact
      781 aacgcaagaa ataattacct tatcacctat tttaaaattt ttaactgctg agccaatttc
      841 ctctattata ccaactccct catgtccgag tattctccca ttaaaagatc ctgttttttc
      901 ttttgcattt ttctctattt ctgggttctt tccttttaat attccaagat ctgttccaca
      961 aattgtggtt ttaatcatgc gaataatagc gtcgcctgga ttgattatct ctggtttttt
     1021 tcgttcctca aaacgaacat cattttcacc ataaaaaacc atagctttca tttgtatatc
     1081 accttatgca tccgtttact ttgtttgtat attgtatcat ttgtttgttt tttgttgttt
     1141 tttttgtgct ttttgtgctt tttgtgcttt ttgtgcttat gtcgttgggg ctgggcgggg
     1201 gcgaaaatct ggaaagcgaa tcagatcttt gtgagaacct tcttgagatc ctttttttct
     1261 cgtcgtaatc ttatggtcag taaacgaaaa aaccgcccag caaggcggtt ttttcgaagg
     1321 ttcttagagc agcaactctt tgaaaccgcg gtaactggct tggaggagcg cagtcaccaa
     1381 aacatgtcct ttcagtttag ccttaactgg ctcataactt caagactaac tcctctaaat
     1441 cagttaccag tggctgctgc cagtggtgct tttgcatgtc ttaccgggtt ggactcaaga
     1501 cgatagttac cggataaggc gcagcagtcg gactgaacgg ggggttcgtg catacagtcc
     1561 agcttggagc gaactgcctt cccggaaccg agtgtcaggc gtggaatgag aaaccgcggc
     1621 cacaacagcg gaatgacacc ggcaaaccgg atggcaggaa caggagagcg cacgagggag
     1681 ccaccagggg gaaacgcctg gtatctttaa gtcctgtcgg gtttcgccac cactgatttg
     1741 agcgtcagat ttcgtgatgc ttgtcagggg ggcggagcct atggaaaaac ggcaacgccg
     1801 catccttttt ccggccctta ctgatccctc gctattccgt catcctgttc tccgtgagtc
     1861 ggtaacgccc gccgcagcct catgaccgaa cgtagtgagc gaatgagcga ggaggcgtaa
     1921 tttcatatgt ccgtgcatgc tattgcggac gctcctgaac tacatatcac acctgtcaca
     1981 tgaagcactt tcctgattac agcactcatg ccaacatatt aagccagtat acactccgct
     2041 agcgctacgt gactggttca gggctgcgcc ccgaaacccg ccaaaagcca ctgacgcgcc
     2101 tgcggcttgt ccaacaccgc gccgatcggg aaagtatttc ccgcccgtcc cggcgttatc
     2161 aggaggcctg attggcagat aaacgcagca aaatgcttac gatgtgggtg actgaggatg
     2221 agcaccggcg tctgctggag cgctgcgacg gtaagcagct cgcagcctgg atgcggcaga
     2281 cgtgcctgga cgagaagccg gcacgcgcct gcaaacttcc gtcgatctcg ccggcgctgc
     2341 ttcggcagct cgccggtatg ggtaacaacc tcaaccagat tgcccgccaa gttaacgccg
     2401 gtggcggcag cgcacacgac cgcgtgcaga tagtctccgc gctgatggcc attaatgccg
     2461 gactcgagcg gctgcggcat gccgtactgg aaaagggagc tgacgatgat cgttaagttt
     2521 catccccggg ggcgcggcgg cggggccggg ccggtggatt atctgctggg aaaagaccgc
     2581 cagcgcgaag gtgccagcgt tctgcagggt aaaccggagg aagtccggga gcttatcgac
     2641 gcctcgccct acgccaaaaa gtacacctcc ggcgtcctgt cgtttgccga acaggactta
     2701 ctgcccggcc agcgcgaaaa gctgatggcg agcttcgagc gggttctgat gcccggactc
     2761 gataaagacc agtacagcgt gctgtgggtt gagcaccggg acaaggggcg gctggagctg
     2821 aacttcctga tcccgaacac ggagctgctg accggcaggc ggctccagcc gtattacgac
     2881 cgcgccgacc gtccgcgcat tgacgcctgg cagaccatag tgaacggcag gctggggctg
     2941 cacgacccga acgcgccgga aaaccggcgg gcgctggtca cgccttccgc gctgccggaa
     3001 gcgaagcagg aagccgctca ggcgattacg cggggcttac tggccttagc ctcgtccggg
     3061 gagctgaaaa cccgtcagga cgtcactgag gcgctggaaa gcgcaggttt tgaggtggtg
     3121 cgtaccacga aaagcagcat cagtattgcc gacccggagg gggggcgaaa catccgactg
     3181 aagggagcca tctatgaaca gtcttttaac gctggcgaag gacttagagc agaaatcgaa
     3241 agcgcagcag cagagtaccg gcgagatgct gaaagccgca ttcagcgagc acgagaagtc
     3301 tgtcagagcg gaactgagcg aaagcgagaa gagaatcagc gccgccatcc tcgaccacga
     3361 ccggaagctg tcctcagcca tgagccagcg tacgaaaggg atgctgcgca tggtcagcca
     3421 gacgtggctg actatcgtcc tggtgtccgc gctgctgata gcctcgagcg cgggcattct
     3481 gtggtggcag agtcagcaga tactcgacaa ttacacgacc atccgggagc agaagagcac
     3541 gcaggcaatg ctgtcagaga ggaacagcgg cgtgcagctc tcgacctgcg gcgagcagag
     3601 acgccgctgc gtgaaggtga acccggaagc gggacggttc ggagaggatt cgagctggat
     3661 gatactggcg gggaaatagc acatgacgga gctggaaaaa cagttgctga gcgcattaga
     3721 gcagctacag caggactact cgaaaaggct ggacgagtgg gagagcgcct tcgcggaatg
     3781 gcggacgatg tctggtctta tgcaacggga gaacgcggcg ctgagcgagc gcgtcacggg
     3841 cttgagcagg caggtgcaga gtttgagcga gcagctgcgc cggttgtcgt aatgctgaac
     3901 gggatagagg cacaccggga gcaggagcgg gcggcgcagc atcagaaagc gctggagctg
     3961 gagcgatctc agcgacagcg gacgtataac ggcccttcac tgtgataacc ggataaaatg
     4021 gggctttcgg cggacatctg cgctgaaagc cggagccatt cacccggctg catggctatg
     4081 cagtccgggg aaatttatcg gacgcaaaaa ggcggtttcc cgggtgcttt gctgcgggtt
     4141 ttacccggca ggctccgtat tcgcgcccaa tccgcccgga gcggtgcggg caagggatgt
     4201 tatgtttaat taaacactca tcatgagagc tagctaattt t
//
