LOCUS       NC_010656               2089 bp    DNA     circular CON 06-JUL-2023
DEFINITION  Shigella boydii CDC 3083-94 plasmid pBS512_2, complete sequence.
ACCESSION   NC_010656
VERSION     NC_010656.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02604039
            Assembly: GCF_000020185.1
KEYWORDS    RefSeq.
SOURCE      Shigella boydii CDC 3083-94
  ORGANISM  Shigella boydii CDC 3083-94
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2089)
  AUTHORS   Rasko,D.A., Rosovitz,M., Maurelli,A.T., Myers,G., Seshadri,R.,
            Cer,R., Jiang,L., Ravel,J. and Sebastian,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-MAY-2008) J. Craig Venter Institute, 9704 Medical
            Center Drive, Rockville, MD 20850, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 07/06/2023 01:43:42
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,144
            CDSs (total)                      :: 5,013
            Genes (coding)                    :: 4,194
            CDSs (with protein)               :: 4,194
            Genes (RNA)                       :: 131
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 102
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 819
            CDSs (without protein)            :: 819
            Pseudo Genes (ambiguous residues) :: 0 of 819
            Pseudo Genes (frameshifted)       :: 284 of 819
            Pseudo Genes (incomplete)         :: 533 of 819
            Pseudo Genes (internal stop)      :: 147 of 819
            Pseudo Genes (multiple problems)  :: 140 of 819
            Pseudo Genes (short protein)      :: 3 of 819
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP001058.1.
            Source DNA and bacteria available from Jacques Ravel, Institute for
            Genome Sciences, Department of Microbiology and Immunology,
            University of Maryland School of Medicine;
            jravel@som.umaryland.edu.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2089
                     /organism="Shigella boydii CDC 3083-94"
                     /mol_type="genomic DNA"
                     /strain="BS512; CDC 3083-94"
                     /db_xref="taxon:344609"
                     /plasmid="pBS512_2"
     gene            703..1668
                     /locus_tag="SBBS512_RS00005"
                     /old_locus_tag="SbBS512_B0002"
     CDS             703..1668
                     /locus_tag="SBBS512_RS00005"
                     /old_locus_tag="SbBS512_B0002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012421200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_012421200.1"
                     /translation="MSEDKFLSDYSPRDAVWDTQRTLTDSVGGIYQIAAEFERYALRMA
                     SCSGLLRFGWSTIMETGETRLRLRSAQFCRVRHCPVCQWRRTLMWQARFYQALPKIVVD
                     YPSSRWLFLTLTVRNCEIGELGTVLTAMNAAFKRMEKRKELSPVQGWIRATEVTRGKDG
                     SAHPHFHCLLMVQPSWFKGKNYVKHERWVELWRDCLRVNYEPNIDIRAVKTKTGEVVAN
                     VAEQLQSAVAETLKYSVKPEDMANDPEWFLELTRQLHKRRFISTGGALKNVLQLDRETN
                     EDLVIADDVGDGTDDGKRTAFVWDSGKRRYKRAPEKDKSD"
                     /name="protein rep"
     gene            1672..1938
                     /locus_tag="SBBS512_RS00010"
                     /old_locus_tag="SbBS512_B0003"
     CDS             1672..1938
                     /locus_tag="SBBS512_RS00010"
                     /old_locus_tag="SbBS512_B0003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001024536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001024536.1"
                     /translation="MNINIEYLNGNKTIGLFFLRSEAVIPDRFKNLILLIDGLSFGTFG
                     FHPHEGFEDELILYIQKTNERVKTLFVKIDLNGIKFGFLRTHS"
                     /name="hypothetical protein"
     Typing          1097..1328
                     /name="Col(BS512)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.05e-118"
ORIGIN
        1 aacactctgc gagtggtaca ttttccccgg attatcgtcc tgagcctgcc gctggctctc
       61 tttctaccgc ctcgctttgc tcgttgctca acgcctcaca gacacggatt aaaatccgca
      121 tccgttcacc gttttttaaa gtccgttaaa agcatgatgc catctccgag agttaatctc
      181 gtcaaatgct aaatcgtggg ggtccccttt ggggttccga tttagtgatt gacgacacca
      241 ccgattaaaa aacttatgcg gggtggatgg tttcacgaag tgaggccatc cacctgtaag
      301 acagggtttt gtttttattc cctgttttgg tgatcgggtg tgtggaaaag gttgggctca
      361 gccgttcggg ggtgcttgtt ttggggggtt aaaattgtgg ttattttttg cgcaagtctc
      421 gcgcgtgatc cttgtattta tacttaaggg ataaatggcg gatatgaaat agtggtttag
      481 cccagtaatg acgaggcttt gagtgggttt tgacaggtca aagaaaatgg agcagaattg
      541 aggcgttttt aatcggcgtt ggggagtgcg tcaacactcc ccaacatttc gaatgtgtca
      601 cctcagcggc aaactctggt gacatgtact ggctcgcaat gcacaggtac gtgatgaata
      661 taccacatca aatcacagcc tgcccagatc ggagcaggct taatgtcaga agataaattc
      721 ctttcggact acagcccccg tgatgcagtt tgggataccc agcgcacgct taccgattct
      781 gtagggggta tctaccagat tgctgctgaa ttcgagcgct atgcactccg tatggcctcc
      841 tgtagcggtt tgttacgttt tggttggtct accatcatgg aaaccggaga aacgcgccta
      901 cggcttcgta gtgcgcaatt ttgccgtgtc cgtcattgcc ctgtctgcca gtggagaaga
      961 accctcatgt ggcaagcccg tttttatcag gctctaccga aaattgttgt ggattacccg
     1021 tcttcccgat ggttgtttct gacgttaact gtcaggaact gcgagatagg tgaacttgga
     1081 acagtcctta cagcaatgaa tgcggcgttt aagcgaatgg aaaagcgaaa ggagctatca
     1141 cctgttcagg ggtggatcag ggctacggag gtgacgcgag gtaaggatgg cagcgcacat
     1201 ccgcattttc actgtctgct gatggtgcaa ccttcttggt ttaaagggaa gaactacgtt
     1261 aagcacgaac gttgggtaga actctggcgc gattgcttgc gggtgaacta tgagccgaat
     1321 atcgatattc gggcagtaaa aactaagaca ggtgaggttg tggccaacgt tgccgagcaa
     1381 ctgcaaagcg cggttgctga aacgctgaaa tactccgtta aaccggaaga tatggcaaac
     1441 gatcctgagt ggtttcttga gctgacgcgg cagcttcaca agcgccgttt tatctcgacc
     1501 ggtggggcgc taaaaaacgt cctccagttg gatcgagaaa ccaatgagga tcttgtcatt
     1561 gccgacgatg taggggatgg cactgatgac gggaagcgga cggcgtttgt ctgggattca
     1621 ggtaaacggc gttacaaacg cgcccctgag aaggataaat cggattaacg tatgaatatt
     1681 aatattgaat acctgaatgg aaataagact attggtttat tttttttaag aagtgaagcg
     1741 gtgattcctg acaggtttaa aaaccttatt ttgcttattg atggattaag ttttggcaca
     1801 tttggttttc atccgcacga aggttttgag gatgaattaa ttttatatat tcagaaaaca
     1861 aacgagaggg taaaaactct ttttgtgaaa atagatttaa acggtatcaa gtttggattt
     1921 ttaagaacgc attcttagtt ctggaaaaga gccagcggca ggctgaggtg ataggtacga
     1981 gattgcatgc aatctctagt gctctgtcta tcctgcatta tcctcagcat tatcctcagc
     2041 cttgccaact cgacaccaat gcaggataga caatccgatg tcaaatgtt
//
