LOCUS       NC_010626               2908 bp    DNA     circular CON 08-FEB-2024
DEFINITION  Mammaliicoccus sciuri plasmid pC194-like, complete sequence.
ACCESSION   NC_010626
VERSION     NC_010626.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14225752
KEYWORDS    RefSeq.
SOURCE      Mammaliicoccus sciuri
  ORGANISM  Mammaliicoccus sciuri
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Mammaliicoccus.
REFERENCE   1  (bases 1 to 2908)
  AUTHORS   Hauschild,T., Stepanovic,S., Vukovic,D., Dakic,I. and Schwarz,S.
  TITLE     Occurrence of chloramphenicol resistance and corresponding
            resistance genes in members of the Staphylococcus sciuri group
  JOURNAL   Int J Antimicrob Agents 33 (4), 383-384 (2009)
   PUBMED   19091524
REFERENCE   2  (bases 1 to 2908)
  AUTHORS   Hauschild,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-MAR-2008) Department of Microbiology, Institute of
            Biology, University of Bialystok, Swierkowa 20 B, Bialystok 15-950,
            Poland
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/08/2024 02:23:03
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2
            CDSs (total)                      :: 2
            Genes (coding)                    :: 1
            CDSs (with protein)               :: 1
            Genes (RNA)                       :: 0
            tRNAs                             :: 0
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 1
            CDSs (without protein)            :: 1
            Pseudo Genes (ambiguous residues) :: 0 of 1
            Pseudo Genes (frameshifted)       :: 1 of 1
            Pseudo Genes (incomplete)         :: 0 of 1
            Pseudo Genes (internal stop)      :: 0 of 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            EU602348.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2908
                     /organism="Mammaliicoccus sciuri"
                     /mol_type="genomic DNA"
                     /isolate="101"
                     /db_xref="taxon:1296"
                     /plasmid="pC194-like"
                     /geo_loc_name="Serbia"
                     /note="chloramphenicol resistance plasmid"
     gene            complement(488..1411)
                     /locus_tag="HS512_RS00005"
                     /old_locus_tag="pC194_p2"
     CDS             complement(488..1411)
                     /locus_tag="HS512_RS00005"
                     /old_locus_tag="pC194_p2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002499696.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_000417606.1"
                     /translation="MEKYTEKKQRNQVFQKFIKRHIGENQMDLVEDCNTFLSFVADKTL
                     EKQKLYKANSCKNRFCPVCAWRKARKDALGLSLMMQYIKQQEKKEFIFLTLTTPNVMSD
                     ELENEIKRYNNSFRKLIKRKKVGSVIKGYVRKLEITYNKKRDDYNPHFHVLIAVNKSYF
                     TDKRYYISQQEWLDLWRDVTGISEITQVQVQKIRQNNNKELYEMAKYSGKDSDYLINQK
                     VFDAFYKSLKGKQVLVYSGLFKEAKKKLKNGDLDYLKEIDPTEYIYQIFYIWKQKEYLA
                     SELYDLTEQEKREINHKMIDEIEEEQ"
                     /name="protein rep"
     gene            1881..2600
                     /gene="catA"
                     /locus_tag="HS512_RS00010"
                     /old_locus_tag="pC194_p4"
                     /pseudo=""
     ARG             1882..2528
                     /name="catA"
                     /gene="catA"
                     /gene_name="type A-9 chloramphenicol O-acetyltransferase"
                     /tool="amrfinderplus"
                     /drug_class="PHENICOL"
                     /identity="100.0"
                     /coverage="100.0"
     ARG             1882..2531
                     /name="Limosilactobacillus reuteri cat-TC"
                     /gene="Limosilactobacillus reuteri cat-TC"
                     /gene_name="chloramphenicol acetyltransferase (CAT)"
                     /tool="rgi"
                     /drug_class="phenicol antibiotic"
                     /identity="98.54"
                     /coverage="90.76"
     Typing          complement(489..1423)
                     /name="rep_cluster_1230"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 aaccacataa cagtcataaa accactcctt tttaacaaac tttatcacaa gaaatattta
       61 aattttaaat gcctttattt tgaattttaa ggggcatttt aaagatttag gggtaaatca
      121 tatagtttta tgcctaaaaa cctacagaag cttttaaaaa gcaaatatga gccaaataaa
      181 tatattctaa ttctacaaac aaaaatttga gcaaattcag tgtcgatttt ttaagacact
      241 gcccagttac atgcaaatta aaattttcat gattttttat agttcctaac agggttaaaa
      301 tttgtataac gaaagtataa tgtttatata acgttagtat aataaagcat tttaacatta
      361 tacttttgat aatcgtttat cgtcgtcatc acaataactt ttaaaatact cgtgcataat
      421 tcaacagctg acctcccaat aactacatgg tgttatcggg aggtcagctg ttagcactta
      481 tattttgtta ttgttcttcc tcgatttcgt ctatcatttt gtgattaatt tctctttttt
      541 cttgttctgt taagtcataa agttcactag ctaaatactc tttttgtttc caaatataaa
      601 aaatttgata gatatattcg gttggatcaa tttcttttaa gtaatctaaa tccccatttt
      661 ttaatttctt tttagcctct ttaaataatc ctgaataaac taatacctgt ttacctttaa
      721 gtgatttata aaatgcatca aagacttttt gatttattaa ataatcacta tctttaccag
      781 aatacttagc catttcatat aattctttat tattattttg tcttattttt tgaacttgaa
      841 cttgtgttat ttctgaaatg cccgttacat cacgccataa atctaaccat tcttgttggc
      901 taatataata tcttttatct gtgaaatacg atttatttac tgcaattaac acatgaaaat
      961 gaggattata atcatctctt tttttattat atgtaatctc taacttacga acatatccct
     1021 ttataacact acctactttt tttctcttta taagttttct aaaagaatta ttataacgtt
     1081 ttatttcatt ttctaattca tcactcatta cattaggtgt agtcaaagtt aaaaagataa
     1141 actccttttt ctcttgctgc ttaatatatt gcatcatcaa agataaaccc aatgcatctt
     1201 ttctagcttt tctccaagca cagacaggac aaaatcgatt tttacaagaa ttagctttat
     1261 ataatttctg tttttctaaa gttttatcag ctacaaaaga cagaaatgta ttgcaatctt
     1321 caactaaatc catttgattc tctccaatat gacgtttaat aaatttctga aatacttgat
     1381 ttctttgttt tttctcagta tacttttcca tgttataaca cataaaaaca acttagtttt
     1441 cacaaactat gacaataaaa aaagttgctt tttccccttt ctatgtatgt tttttactag
     1501 tcatttaaaa cgatacatta ataggtacga aaaagcaact ttttttgcgc ttaaaaccag
     1561 tcataccaat aacttaaggg taactagcct cgccggcaat agttaccctt attatcaaga
     1621 taagaaagaa aaggattttt cgctatgctc aaatccttta aaaaaacaca aaagaccaca
     1681 ttttttaatg tggtctttta ttcttcaact aaagcaccca ttagttcaac aaacgaaaat
     1741 tggataaagt gggatatttt taaaatatat atttatgtta cagtaatatt gacttttaaa
     1801 aaaggattga ttctaatgaa gaaagcagac aagtaagcct cctaaattca ctttagataa
     1861 aaatttagga ggcatatcaa atgaacttta ataaaattga tttagacaat tggaagagaa
     1921 aagagatatt taatcattat ttgaaccaac aaacgacttt tagtataacc acagaaattg
     1981 atattagtgt tttataccga aacataaaac aagaaggata taaattttac cgtgcattta
     2041 ttttcttagt gacaagggtg ataaactcaa atacagcttt tagaactggt tacaatagcg
     2101 acggagagtt aggttattgg gataagttag agccacttta tacaattttt gatggtgtat
     2161 ctaaaacatt ctctggtatt tggactcctg taaagaatga cttcaaagag ttttatgatt
     2221 tatacctttc tgatgtagag aaatataatg gttcggggaa attgtttccc aaaacaccta
     2281 tacctgaaaa tgctttttct ctttctatta ttccatggac ttcatttact gggtttaact
     2341 taaatatcaa taataatagt aattaccttc tacccattat tacagcagga aaattcatta
     2401 ataaaggtaa ttcaatatat ttaccgctat ctttacaggt acatcattct gtttgtgatg
     2461 gttatcatgc aggattgttt atgaactcta ttcaggaatt gtcagatagg cctaatgact
     2521 ggcttttata atatgagata atgccgactg tactttttac agtcggtttt ctaatgtcac
     2581 taacctgccc cgttagttga agaaggtttt tatattacag ctccagatcc atatccttct
     2641 ttttctgaac cgacttctcc tttttcgctt ctttattcca attgctttat tgacgttgag
     2701 cctcggaacc cttaacaatc ccaaaacttg tcgaatggtc ggcttaatag ctcacgctat
     2761 gccgacattc gtctgcaagt ttagttaagg gttcttctca acgcacaata aattttctcg
     2821 gcataaatgc gtggtctaat ttttattttt aataaccttg atagcaaaaa atgccattcc
     2881 aatacaaaac cacataccta taatcgat
//
