LOCUS       NC_010403               2726 bp    DNA     circular CON 16-JUL-2023
DEFINITION  Acinetobacter baumannii AYE plasmid p4ABAYE, complete sequence.
ACCESSION   NC_010403
VERSION     NC_010403.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3138279
            Assembly: GCF_000069245.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii AYE
  ORGANISM  Acinetobacter baumannii AYE
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 2726)
  AUTHORS   Vallenet,D., Nordmann,P., Barbe,V., Poirel,L., Mangenot,S.,
            Bataille,E., Dossat,C., Gas,S., Kreimeyer,A., Lenoble,P., Oztas,S.,
            Poulain,J., Segurens,B., Robert,C., Abergel,C., Claverie,J.M.,
            Raoult,D., Medigue,C., Weissenbach,J. and Cruveiller,S.
  TITLE     Comparative analysis of Acinetobacters: three genomes for three
            lifestyles
  JOURNAL   PLoS One 3 (3), e1805 (2008)
   PUBMED   18350144
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2726)
  AUTHORS   Genoscope -,C.E.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-FEB-2008) Genoscope - Centre National de Sequencage :
            BP 191 91006 EVRY cedex - FRANCE (E-mail : seqref@genoscope.cns.fr -
            Web : www.genoscope.cns.fr)
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 07/16/2023 10:30:02
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,909
            CDSs (total)                      :: 3,815
            Genes (coding)                    :: 3,700
            CDSs (with protein)               :: 3,700
            Genes (RNA)                       :: 94
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 115
            CDSs (without protein)            :: 115
            Pseudo Genes (ambiguous residues) :: 0 of 115
            Pseudo Genes (frameshifted)       :: 46 of 115
            Pseudo Genes (incomplete)         :: 65 of 115
            Pseudo Genes (internal stop)      :: 27 of 115
            Pseudo Genes (multiple problems)  :: 20 of 115
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CU459139.1.
            Annotation data relative to BLAST similarities, COG assignations,
            enzymatic function prediction (PRIAM software), TMHMM and SignalP
            predictions, and synteny results (Syntonizer software) are
            available in BaumannoScope database via the MaGe annotation system
            http://www.genoscope.cns.fr/agc/mage/baumannoscope.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2726
                     /organism="Acinetobacter baumannii AYE"
                     /mol_type="genomic DNA"
                     /strain="AYE"
                     /db_xref="taxon:509173"
                     /plasmid="p4ABAYE"
     gene            36..1286
                     /locus_tag="ABAYE_RS00085"
                     /old_locus_tag="p4ABAYE0001"
     CDS             36..1286
                     /locus_tag="ABAYE_RS00085"
                     /old_locus_tag="p4ABAYE0001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001180320.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_001180321.1"
                     /translation="MQNLDKKKPLLSDSLATGDNKGFASPKGDQHRDRITRFGILKHRS
                     KQQENYLFSLAKIKENYHADVKNDESIRAMKTAQKLNGCGNFLLFKNFYTINQIKLAKF
                     QACSEHLLCPFCAGIRASKAIQKYSERVDQVLSENPRLKPVMITFTVKNGVDLGERFTH
                     LIKSFRTLIERRRDYIKKGRGFNEFCKINGAMYSYENTYNEKTNEWHPHIHMFALLDDW
                     IDQDELSQYWQSITGDSMVVDIRRAKKQKDLGYSGAAAEVCKYALKFGDLSVEKTWEAF
                     KVLKGKRLSGAFGSLWGVKIPESLIDDLPDDSDLPYLEMIYKFVFSKKSYYDLQLTRHV
                     EPTGKDDADELRGEEGRNLLVSMDGRGASDAGRARTGALAPQHGRKKQHWQIPPVTRVR
                     VRKRIRRWDGYLCVLHL"
                     /name="protein rep"
     gene            1384..1599
                     /locus_tag="ABAYE_RS00090"
                     /old_locus_tag="p4ABAYE0002"
     CDS             1384..1599
                     /locus_tag="ABAYE_RS00090"
                     /old_locus_tag="p4ABAYE0002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001262269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001262269.1"
                     /translation="MANANTTVLELLGKQVSFVYVLKSDSDEYSFTCSGVVTDVIISLN
                     SEPQLSVDNGDFYIYSDLKDFFIKSE"
                     /name="hypothetical protein"
     gene            1907..2224
                     /locus_tag="ABAYE_RS00095"
                     /old_locus_tag="p4ABAYE0003"
     CDS             1907..2224
                     /locus_tag="ABAYE_RS00095"
                     /old_locus_tag="p4ABAYE0003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000070380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000070381.1"
                     /translation="MSNPSKLDTLVAEISGTAESEYIGLYKQIPFRVRLPLFARLSALH
                     TVQNSHNKTPRNALLNDLLEIAMDQVMSKLDEETLEGLGHLEAQYYEELSQYDSGELSD
                     D"
                     /name="hypothetical protein"
     gene            2217..2390
                     /locus_tag="ABAYE_RS20400"
                     /old_locus_tag="p4ABAYE0004"
     CDS             2217..2390
                     /locus_tag="ABAYE_RS20400"
                     /old_locus_tag="p4ABAYE0004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005065469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_162097781.1"
                     /translation="MIRKPRIISNTPMESLDEACTYFRQVLQEHLDKKRQITFFTIAMV
                     DGRLKLIEGIPE"
                     /name="hypothetical protein"
     gene            2387..2677
                     /locus_tag="ABAYE_RS00105"
                     /old_locus_tag="p4ABAYE0005"
     CDS             2387..2677
                     /locus_tag="ABAYE_RS00105"
                     /old_locus_tag="p4ABAYE0005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000593064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000593064.1"
                     /translation="MIKLEGTVLNTYHLDGGTNKKGEEYEARDKVQLLGSLELPNGQIK
                     NELIDLTVEDSRIYDDFKNKLISISCGAMAVGRNVIFYVRKGAKPVLADHL"
                     /name="hypothetical protein"
     Typing          37..1286
                     /name="rep_cluster_420"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ttacttgata ctattgatta aagcggggac aaaatttgca gaatttagat aagaaaaaac
       61 ccctgttatc ggacagtttg gcgaccggtg ataacaaggg ttttgcatct cccaaaggag
      121 atcaacatag ggatagaata acacgttttg gcattttgaa acatagatcg aagcaacaag
      181 aaaactattt attttcgtta gctaagatta aagaaaatta tcatgccgat gtaaaaaacg
      241 atgaatctat tcgcgccatg aaaactgccc aaaaattaaa tgggtgcggt aattttcttc
      301 tattcaaaaa tttttacacc attaatcaaa ttaaactcgc caagttccaa gcttgtagtg
      361 agcatttgtt atgtccgttt tgtgctggta ttagagcttc taaggcaatt caaaaatact
      421 ctgagcgtgt tgatcaagtc ttatctgaaa atcctcgttt aaagcccgtt atgatcacgt
      481 ttacggttaa aaatggggta gacctagggg aacggttcac ccatcttata aaatcgttta
      541 gaacgcttat agagcgtcgt agggactata ttaaaaaagg gcgtggcttt aatgaatttt
      601 gcaaaattaa tggtgcgatg tattcatatg agaatactta caatgaaaaa actaatgaat
      661 ggcatcctca tattcatatg tttgcacttt tggatgattg gatagatcag gatgaattgt
      721 ctcaatattg gcaatccatt actggggact ctatggtcgt tgatattcgt agagccaaaa
      781 aacaaaaaga cttaggctat tcaggtgctg ctgctgaagt ctgtaaatat gctctcaaat
      841 ttggtgatct ttctgtagaa aagacttggg aagctttcaa agttttgaaa ggtaagcgat
      901 taagtggggc ttttggatct ctttggggcg tgaaaattcc tgaatcattg atagatgatc
      961 ttccagacga ttctgattta ccttatttag aaatgattta taagttcgtc ttttctaaga
     1021 agtcttatta cgatttacaa cttactcgtc atgtcgaacc tacaggtaag gacgacgccg
     1081 acgagcttcg aggagaagaa ggacgcaacc tgttggtgag catggacggg cgaggagcga
     1141 gcgacgctgg gagggcccgc actggcgcgc tagccccgca gcacggacga aaaaaacaac
     1201 actggcaaat tccaccagtt actcgtgttc gggttcggaa gcgaatccga agatgggacg
     1261 gatatttatg tgtcttacat ttatagtttt ttaactagtt aataatacta gtaagtcggt
     1321 gaaatcaggg agtgccatcc ccgatttcac ctaaccacaa cgtactgtca aggagtactt
     1381 atcatggcta acgcgaatac tactgtttta gaacttttag gcaaacaagt ttcttttgtt
     1441 tatgttctta agtctgattc agatgaatat tctttcacct gttctggtgt tgtgactgat
     1501 gtaattatca gtcttaactc tgaaccacag ctctctgttg ataacgggga tttttatatt
     1561 tattcggatt taaaggattt ctttattaag tctgaataag ggtctcttgg tatatttacg
     1621 aaatctcatg ccacgcttga aacttaaggg tttcaggcgt gtttttttat agtttcttga
     1681 gaaacgcgta agcgtgcatt actgaaaaaa cacctaaatc ttagagtggg tgtctaccca
     1741 cgaactgaca taaaacgatt taaaaacttt cctctctgat tacaagttcc ctttagccta
     1801 agaacgggag ttaccgagct ttgctcgccg tgatattgaa tagattttaa ttttgatata
     1861 taaatggaat cacaaaatga ttccttttat atataaggta agatttatga gcaatccatc
     1921 aaaattagat actcttgttg cagagattag tggtactgct gaatctgaat atattggtct
     1981 ttataagcag attccttttc gtgtaagact tccccttttt gcacgtttat cagcacttca
     2041 taccgtccaa aattcccata ataaaactcc gcgtaatgcg ctgttgaatg acttacttga
     2101 aatcgccatg gatcaagtta tgtctaaatt agatgaggaa actttggaag gtcttggcca
     2161 tttagaagct caatattatg aagagctttc tcaatatgat tctggagaac tttcagatga
     2221 ttagaaaacc acgaattata agtaacactc ctatggaaag cctggatgaa gcatgtactt
     2281 actttagaca ggttctccaa gaacatttag ataaaaaaag acaaattaca ttttttacca
     2341 ttgctatggt tgatggtcgt ttgaagttaa ttgaggggat accagaatga ttaagcttga
     2401 aggcacagtt ttaaatacat accacttaga tggtgggact aataaaaagg gcgaagaata
     2461 tgaagctcga gataaagtcc aacttctagg ttcgttggag cttcccaacg gacaaattaa
     2521 aaatgaatta atcgacctta ctgtcgaaga ttctcgtatt tatgatgatt tcaaaaataa
     2581 gcttattagc atcagttgtg gtgctatggc tgttggtcgt aacgttattt tttatgttcg
     2641 aaaaggtgcg aaacctgttt tagcagatca cttatgattt tccctaaaaa acatcgagtt
     2701 agcgaagcgt ctcgatgttt tttctt
//
