LOCUS       NC_010401               5644 bp    DNA     circular CON 16-JUL-2023
DEFINITION  Acinetobacter baumannii AYE plasmid p1ABAYE, complete sequence.
ACCESSION   NC_010401
VERSION     NC_010401.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3138279
            Assembly: GCF_000069245.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii AYE
  ORGANISM  Acinetobacter baumannii AYE
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 5644)
  AUTHORS   Vallenet,D., Nordmann,P., Barbe,V., Poirel,L., Mangenot,S.,
            Bataille,E., Dossat,C., Gas,S., Kreimeyer,A., Lenoble,P., Oztas,S.,
            Poulain,J., Segurens,B., Robert,C., Abergel,C., Claverie,J.M.,
            Raoult,D., Medigue,C., Weissenbach,J. and Cruveiller,S.
  TITLE     Comparative analysis of Acinetobacters: three genomes for three
            lifestyles
  JOURNAL   PLoS One 3 (3), e1805 (2008)
   PUBMED   18350144
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5644)
  AUTHORS   Genoscope -,C.E.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-FEB-2008) Genoscope - Centre National de Sequencage :
            BP 191 91006 EVRY cedex - FRANCE (E-mail : seqref@genoscope.cns.fr -
            Web : www.genoscope.cns.fr)
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 07/16/2023 10:30:02
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,909
            CDSs (total)                      :: 3,815
            Genes (coding)                    :: 3,700
            CDSs (with protein)               :: 3,700
            Genes (RNA)                       :: 94
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 115
            CDSs (without protein)            :: 115
            Pseudo Genes (ambiguous residues) :: 0 of 115
            Pseudo Genes (frameshifted)       :: 46 of 115
            Pseudo Genes (incomplete)         :: 65 of 115
            Pseudo Genes (internal stop)      :: 27 of 115
            Pseudo Genes (multiple problems)  :: 20 of 115
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CU459137.1.
            Annotation data relative to BLAST similarities, COG assignations,
            enzymatic function prediction (PRIAM software), TMHMM and SignalP
            predictions, and synteny results (Syntonizer software) are
            available in BaumannoScope database via the MaGe annotation system
            http://www.genoscope.cns.fr/agc/mage/baumannoscope.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5644
                     /organism="Acinetobacter baumannii AYE"
                     /mol_type="genomic DNA"
                     /strain="AYE"
                     /db_xref="taxon:509173"
                     /plasmid="p1ABAYE"
     gene            629..1579
                     /locus_tag="ABAYE_RS00005"
                     /old_locus_tag="p1ABAYE0001"
     CDS             629..1579
                     /locus_tag="ABAYE_RS00005"
                     /old_locus_tag="p1ABAYE0001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001031297.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_001031297.1"
                     /translation="MNKENSYDKSYPVTTMAIQNKVTECFKSMSVDEKRILIMASPIAR
                     NVDASEQDQILISAQQFADDCGIKVNSAYKQIENASKKLVDRSFSYVNDRGKKVYSNWV
                     IDATYEDAGISLRFTSIVLVMLKILDKYNPYTRYKKDVVLKLKKDYSIDFYHLAKKNQA
                     KNGFELTLDEMFTEFGLPESYRDLRNLKRRVLKSSLDEINEFTDVTVDYSPVKKGRSVV
                     GFKFTVKEKSKPKLIAPERDPKTIDMFCNLSDAQINKYSAILSKLSELSDLSNFQDYPS
                     FALWISGILRDPKSVREETAKRIFKALHSKTDFKP"
                     /name="replication initiation protein"
     gene            1576..1863
                     /locus_tag="ABAYE_RS00010"
                     /old_locus_tag="p1ABAYE0002"
     CDS             1576..1863
                     /locus_tag="ABAYE_RS00010"
                     /old_locus_tag="p1ABAYE0002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000857160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000857160.1"
                     /translation="MKTRAELDAMSHQELKDYEQILLALWTPRMAIESDIERLSTNRNE
                     LLEIFNQLKNPDAPENERLKNSILSLKYKIEDLEDKLDDLIQDNRLNRAD"
                     /name="hypothetical protein"
     gene            complement(2054..2572)
                     /locus_tag="ABAYE_RS00015"
                     /old_locus_tag="p1ABAYE0003"
     CDS             complement(2054..2572)
                     /locus_tag="ABAYE_RS00015"
                     /old_locus_tag="p1ABAYE0003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000447193.1"
                     /GO_function="GO:0005515 - protein binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="WP_000447193.1"
                     /translation="METFAEPVFSNDLLAKAENGDTSAQLELAEIYLYGHGVDSDENQA
                     EVWALKSAENGNVAAMFWLADGYVTYARLMEDDDKNDSLEHFQKAFKWFQKASENGHSE
                     SMVELADLYTRADSGIEVNINKAFELREKAAKLGNKKAMRSLSVMYRDGIGIPKNTDLA
                     QSWWDKSEN"
                     /name="tetratricopeptide repeat protein"
     gene            2851..3114
                     /locus_tag="ABAYE_RS00020"
                     /old_locus_tag="p1ABAYE0004"
     CDS             2851..3114
                     /locus_tag="ABAYE_RS00020"
                     /old_locus_tag="p1ABAYE0004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016658858.1"
                     /GO_process="GO:0008219 - cell death [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system prevent-host-death
                     family antitoxin"
                     /protein_id="WP_000557944.1"
                     /translation="MHVFTYTDARNNLKSVLDKVIDDVDVAFITRKEGGHAVVMGQDHY
                     DSLMETLYLLSSPNNASRLNESIAQLRAGKTKHRELIEDDES"
                     /name="type II toxin-antitoxin system prevent-host-death
                     family antitoxin"
     gene            3101..3364
                     /locus_tag="ABAYE_RS00025"
                     /old_locus_tag="p1ABAYE0005"
     CDS             3101..3364
                     /locus_tag="ABAYE_RS00025"
                     /old_locus_tag="p1ABAYE0005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004674113.1"
                     /GO_process="GO:0008219 - cell death [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Txe/YoeB family addiction module toxin"
                     /protein_id="WP_000184943.1"
                     /translation="MTNRNVEWTDNAWDEYIYWQTQDKKILKRINTLIKECQRTPFEGT
                     GKPEPLKANLSGFWSRRIDEKHRLVYEVTDERISIIQCRFHY"
                     /name="Txe/YoeB family addiction module toxin"
     gene            complement(3426..3728)
                     /locus_tag="ABAYE_RS00030"
                     /old_locus_tag="p1ABAYE0006"
     CDS             complement(3426..3728)
                     /locus_tag="ABAYE_RS00030"
                     /old_locus_tag="p1ABAYE0006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000110201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000110201.1"
                     /translation="MSVETLEQKIAKQEERLRQLKAQKQAIAAREKKKNSDRQRKDDTR
                     RKILLGAWVLNKLKNDESFKGQLTDFEKFLSTESKTEENRQKDKDLFNGVIWNNT"
                     /name="hypothetical protein"
     gene            3939..5591
                     /gene="mobQ"
                     /locus_tag="ABAYE_RS00035"
                     /old_locus_tag="p1ABAYE0007"
     CDS             3939..5591
                     /gene="mobQ"
                     /locus_tag="ABAYE_RS00035"
                     /old_locus_tag="p1ABAYE0007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005199240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobQ family relaxase"
                     /protein_id="WP_001029311.1"
                     /translation="MAIYHFSVKTISRGNGRSAVACAAYRSGEKLVCNFYGKEQDYTKK
                     TGVEFTEIYAPENTNTELLNRQTLWNKVEKAERRKDALLAREFEIAFPGELNAEQRKNM
                     LNELCQNLVKKYGVIVDAAIHAPHTDSGSDERNYHAHIMFTTRSINEHGDFSAKKYRDF
                     SRDNGTETVSLWRESFAELCNHHLKQNGFDERVDHRSYEDQESDLEATQHEGPQATYLR
                     RRGIFTEISLKNDEIKLRNLKIKKVIALDENIKVSEDLVQKVRSELQFQYSQAEYLEKT
                     SQKLSEFQNEELSKLTTKLNTMSSAISELRKKEPLFFKTKWINQINDLIDQHNTQLDIQ
                     KHISGLSEIEKKERYSDHLNKWTEENQLLQPKKSFAKFDEPNITVKQRKLNDQISNIDH
                     QISEISRRETEYQEYVRDQRLEIINSYIFEEDNYGNKYFSPQNGEKQKRLYAEEMEDLK
                     IQELHTAFTKKIETEAQQEFSQKRAIQLENDRKDRESREQQLRKEREQQEQRYAQEREQ
                     QEHLAFLRRQEQEKQQRNEPKKPENDNNHDYTP"
                     /name="mobQ"
     Typing          630..1579
                     /name="rep_cluster_1171"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          3940..5588
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 acagtaaaac tatagttgat aaaaataaat cgcttaaaac gcaaatgaga gccttttagc
       61 gagtgtctac gagtgacaca acgaaaggtt gcttattccc cctctgaaaa accgtttttt
      121 attgaattac tggggacagt gattagcgag tgtctacgag cgaagtattg atgcttttgc
      181 tcgtcaaaaa gcatgagcat agcgaatgca ttattcatgt tttgcttttt gaatccttga
      241 tcatatatgc aaaaaactgc ccccacgaag cgagtgaaac gagcttcaat agagtacgag
      301 ctttagcgag taccaagggc agttttaata actcactttg gaaataaatt cccttttatt
      361 cttttaaaaa gcttttaaaa gcttttagac cctctgaaaa ccttatgcag caatagtttc
      421 aagcgttaaa agggtacaaa tagcatgata aagggtacaa atagcatgat tttatcgttt
      481 aaaagggtac aaatagcatg attaaagggt acaaatagca tgataaaggg tacaaataaa
      541 ttattgtacc cttatgttta ttggtgtaca ttgttttctc ataagggtac aaaaatcatg
      601 ttcatttttt ataaggtttg atatctgaat gaataaagaa aatagttatg ataaatctta
      661 tccagtaaca acaatggcta ttcaaaacaa agttactgaa tgctttaaaa gcatgtctgt
      721 agatgaaaaa agaattttaa ttatggcttc tccgattgct agaaatgtcg atgcaagtga
      781 acaagatcaa atcttaatat ctgctcaaca atttgctgat gactgtggta tcaaagtcaa
      841 ttctgcttat aaacaaattg aaaatgcgtc aaaaaaacta gtagatcggt ccttttcata
      901 cgttaatgat agggggaaaa aggtctactc taactgggta attgatgcta cttatgaaga
      961 tgcagggata tctttaaggt ttacatctat tgttttggtg atgttgaaaa ttttagataa
     1021 atacaatcca tacactcgtt ataaaaaaga tgtagttcta aaattaaaaa aagactactc
     1081 aatagacttt taccatttag cgaaaaaaaa tcaggcaaaa aatggctttg aattaacgct
     1141 agatgaaatg tttacagagt ttggtttacc agaatcttat agagatttga ggaacttaaa
     1201 acgaagagtt ttgaagagct cattagatga aattaatgaa tttaccgatg taacagttga
     1261 ctatagtcca gttaaaaaag gacgttctgt tgtcggcttt aagttcactg tgaaagaaaa
     1321 atctaagcca aaattaatag ctcctgagcg agatccaaaa acaatagata tgttctgcaa
     1381 cctgtctgat gctcaaatta acaagtacag tgctatttta tctaaacttt ctgagctatc
     1441 agacctaagt aacttccagg actatcctag ttttgccctt tggattagtg gcatcttacg
     1501 agatccgaaa agtgtaagag aggaaacagc aaagcggatt tttaaagctc ttcatagcaa
     1561 gacggatttt aaaccatgaa aactagagct gaattagatg caatgagcca tcaagagctc
     1621 aaagactatg agcaaatttt acttgctctg tggacaccaa gaatggctat tgaaagtgac
     1681 attgaaaggt taagcactaa tcgcaacgaa ttattagaaa tttttaatca attaaaaaat
     1741 cctgatgctc ctgaaaatga gcgtttaaaa aattctattt tatcgctcaa atataagatt
     1801 gaagatttag aagataaatt ggatgatctt attcaagata atcgcttaaa tcgtgcagat
     1861 tgaattattc agtttattta attaaaaccg tgaaacattg atcaaagaat aggcgtggaa
     1921 cgtgaaaaat cataaaaaaa gcccaccaga gggtatgtgg gctaaaatca tgtaactaca
     1981 gcattgattt ctatagataa ttataacgca tttcgtataa ggtgtattat gttaatttta
     2041 ggaaatatta aaactaattt tcagacttat cccaccaact ttgagctaaa tcagtatttt
     2101 taggaatacc tataccatca cgatacataa cggaaagact tcgcattgct ttcttattac
     2161 ctaactttgc agccttttca cgaagttcaa aagctttatt aatattaact tctattccgc
     2221 tatctgcacg agtatataga tcagctaact caaccattga ttcagaatgg ccattttctg
     2281 aggctttctg aaaccactta aaagcttttt ggaaatgttc taaagaatcg tttttgtcat
     2341 catcttccat taatctagca taagtaacat atccatcagc taaccaaaac attgctgcta
     2401 catttccatt ttctgctgat ttaagagccc aaacttcagc ttgattttca tctgaatcaa
     2461 caccatgacc atatagataa atctcggcta attctaactg agcagaagta tctccatttt
     2521 ctgctttcgc taataaatca ttagaaaaaa caggttctgc aaatgtttcc attgaaaggc
     2581 aaactcctaa agccataaaa atatttgtta atttattcaa tttttaacct ttaaactaaa
     2641 ctgttaggct tgtatatttt tatatcatac ctaaaagaaa actctaaaat tagagtatgt
     2701 cttatctcta tttaacataa tggcggttat acgaaattga caatatgtac aggattctgt
     2761 acatttagga ttgtaaagtt tcaatcacta ccgcctaggt agtctagcta gcagcgtttt
     2821 gacgcagctt accctatgag ggatagatat atgcatgtat ttacatatac ggacgcacgt
     2881 aacaatttaa aatctgtttt agataaagta attgatgatg tagacgttgc ttttattaca
     2941 agaaaagaag gtggccatgc tgtagtaatg ggacaagatc attacgatag cttaatggaa
     3001 acgttatatc tcctttcatc tccaaataat gcaagtcgtt taaatgaatc aattgctcaa
     3061 ttacgtgcag ggaaaacaaa acacagagag ttgattgagg atgacgaatc gtaacgtcga
     3121 atggactgat aatgcctggg atgaatatat ctattggcag acacaggata aaaagatact
     3181 taagcgtatt aataccttaa tcaaagaatg tcagcgaaca ccttttgaag gaacaggaaa
     3241 accagaacct ttaaaagcta atctttcagg attttggagt cgtaggattg atgaaaagca
     3301 tagattagtt tatgaagtga cagatgaacg aatctctata attcaatgtc gattccatta
     3361 ctaacaagat cccctatttt taggggattg tttttttatt taatacaaaa tctcatatgc
     3421 gaaatttagg tgttattcca tataacgcca ttaaaaagat ctttatcttt ctgcctattt
     3481 tcttcagtct tactttccgt gcttaaaaac ttttcaaaat cggttagttg acccttaaaa
     3541 gattcatcat ttttcagttt gtttagaacc caagccccca gtagaatttt acgtctagta
     3601 tcatcttttc tttgtcgatc agaatttttc tttttttcac gagcagcaat agcttgtttt
     3661 tgtgctttta gttgtcttaa tcgttcttct tgctttgcaa ttttttgctc taaagtttca
     3721 acactcatac catcaccatc tcaaggaatc cccctcaagc ataggtctgt ttgaattgaa
     3781 attcaagaca gcccatgcta tcgtggtttt cccgaagggc gcacttagcc attggatttc
     3841 atccaatggt gcgacaaggg gtaaatcccc tttgtaatcc ccagaccaac atattcatgt
     3901 tggtaatttc gataaatcga aataaagagc aaaacaaaat ggcgatatat catttttcag
     3961 ttaaaacgat tagtagaggt aatggacgat cagccgttgc ttgtgctgca tatcgttcag
     4021 gtgaaaaatt ggtatgcaat ttctatggaa aagaacaaga ctacacaaaa aaaactggtg
     4081 tcgaatttac agaaatctat gcgcccgaaa atacaaatac cgagttactc aatcgtcaga
     4141 cactttggaa caaagtcgaa aaagccgaac gaagaaaaga tgcattactt gcaagagaat
     4201 ttgaaattgc atttccaggt gaattaaacg ctgaacagcg taaaaatatg ctcaatgaac
     4261 tttgccaaaa cctcgttaaa aaatatggtg tcatcgttga cgctgctatt catgcaccgc
     4321 atacagacag tggaagtgat gaacgcaact accatgcaca catcatgttc accacccgaa
     4381 gtattaatga gcatggtgac ttttcagcaa aaaaatatag ggacttcagt cgtgacaatg
     4441 gcacagaaac tgtaagcctc tggagagaat catttgcaga attatgcaat caccacctga
     4501 aacaaaatgg atttgatgaa cgtgtcgatc acagaagtta tgaagaccag gaaagtgacc
     4561 tagaagcaac tcagcacgaa ggtcctcaag cgacatacct ccggagacga ggaatattta
     4621 cagaaattag tctgaaaaat gatgaaatta agctacgtaa tttaaaaatc aaaaaggtca
     4681 tcgcactgga tgaaaacatc aaagtatctg aggatcttgt tcaaaaagta cgaagtgagc
     4741 ttcagtttca atactctcaa gctgagtatt tagaaaaaac ttctcagaaa ctttctgaat
     4801 tccaaaatga agaattatca aaattaacaa caaaattaaa cacgatgagt tctgcaatat
     4861 cagaactacg caaaaaagag cctttatttt ttaaaacaaa atggatcaat caaataaatg
     4921 acctgatcga ccaacacaac acccaactag acatccaaaa gcatatttct ggtcttagtg
     4981 aaatagaaaa aaaagagaga tattctgatc atttaaataa atggacagaa gaaaatcagc
     5041 tgctccagcc taaaaagtct tttgcaaaat ttgacgaacc gaacatcact gttaaacaac
     5101 gaaaacttaa tgatcaaatt tcaaatatag atcatcaaat ttctgaaata tcacgcagag
     5161 aaactgagta tcaagagtat gtacgcgatc aaagactgga gatcataaat agttatatat
     5221 ttgaagaaga taactatgga aataaatact ttagtcctca aaatggtgaa aaacaaaagc
     5281 gactatatgc agaagaaatg gaagatctaa aaatccaaga attgcatacg gcttttacaa
     5341 aaaaaattga gaccgaagcg cagcaagagt tttcccaaaa aagagcaata cagctcgaaa
     5401 acgaccgaaa agatcgtgaa tctagagaac agcagttacg taaagaacga gagcaacaag
     5461 aacaacgcta tgcacaagaa cgagagcaac aagaacattt ggcattttta agacgccaag
     5521 aacaagaaaa acagcagaga aatgagccta aaaagccaga aaatgacaat aaccatgact
     5581 acacgcctta gcaatcccat ttaagcgcaa aaaaacgggg gttttagcga cttttgatag
     5641 aaat
//
