LOCUS       NC_009791               5033 bp    DNA     circular CON 08-JUN-2024
DEFINITION  Escherichia coli O139:H28 str. E24377A plasmid pETEC_5, complete
            sequence.
ACCESSION   NC_009791
VERSION     NC_009791.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02604038
            Assembly: GCF_000017745.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli O139:H28 str. E24377A
  ORGANISM  Escherichia coli O139:H28 str. E24377A
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 5033)
  AUTHORS   Rasko,D.A., Rosovitz,M.J., Brinkley,C., Myers,G.S.A., Seshadri,R.,
            Cer,R.Z., Jiang,L. and Ravel,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-AUG-2007) The Institute for Genomic Research, 9712
            Medical Center Dr., Rockville, MD 20850, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000017745.1-RS_2024_06_08
            Annotation Date                   :: 06/08/2024 01:09:03
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,187
            CDSs (total)                      :: 5,064
            Genes (coding)                    :: 4,796
            CDSs (with protein)               :: 4,796
            Genes (RNA)                       :: 123
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 268
            CDSs (without protein)            :: 268
            Pseudo Genes (ambiguous residues) :: 0 of 268
            Pseudo Genes (frameshifted)       :: 91 of 268
            Pseudo Genes (incomplete)         :: 172 of 268
            Pseudo Genes (internal stop)      :: 58 of 268
            Pseudo Genes (multiple problems)  :: 48 of 268
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP000801.1.
            Source DNA and bacteria available from Jacques Ravel
            (jravel@tigr.org).
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5033
                     /organism="Escherichia coli O139:H28 str. E24377A"
                     /mol_type="genomic DNA"
                     /strain="E24377A"
                     /db_xref="taxon:331111"
                     /plasmid="pETEC_5"
     gene            join(4914..5033,1..72)
                     /locus_tag="ECE24377A_RS26480"
     CDS             join(4914..5033,1..72)
                     /locus_tag="ECE24377A_RS26480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_000165985.1"
                     /translation="MTKQEKTALNMARFIRSQTLTLLEKLNELDADEQADICESLHDHA
                     DELYRSCLARFGDDGENL"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            740..853
                     /locus_tag="ECE24377A_RS31530"
     CDS             740..853
                     /locus_tag="ECE24377A_RS31530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_223149438.1"
                     /translation="MHEPPVQPDCCALSGNYRLESNPVRHDLTPLSAATGN"
                     /name="replication initiation protein"
     gene            1138..1446
                     /locus_tag="ECE24377A_RS26485"
     CDS             1138..1446
                     /locus_tag="ECE24377A_RS26485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001707532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000136652.1"
                     /translation="MTEKIQGTASVLNQTKTYEELVQKYSPEIANGLLARSINNALPNA
                     KITPNDVAGFCKVTTALRTGKVDLEKTVKEADADAKAVSANIIEGLKTKQKSTVEKE"
                     /name="hypothetical protein"
     gene            complement(1619..2311)
                     /locus_tag="ECE24377A_RS26490"
     CDS             complement(1619..2311)
                     /locus_tag="ECE24377A_RS26490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000550475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3800 domain-containing protein"
                     /protein_id="WP_000550474.1"
                     /translation="MHLLYVDESGTPSDPTLNHFVLSGISVFEKQTHWIEKEMNAIAAR
                     FNSDDPYEREFHGSPMRGGRDGWKKFSLNDRKQAIKDCLALLTQKHRDIRIFACVVPKG
                     SLDGKDVITESFYQISSRFDMYLSRLHHQGDTSRGVAIFDKSSTEKSIQSLARTFKDTG
                     YEYGKLRNFSEVPLFLDSKASRLIQLADLVSYSIFRKFELSDNEFYKIIENCFDYHNGK
                     VHGLYVAH"
                     /name="DUF3800 domain-containing protein"
     gene            complement(3091..3324)
                     /locus_tag="ECE24377A_RS30650"
     CDS             complement(3091..3324)
                     /locus_tag="ECE24377A_RS30650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_001565220.1"
                     /translation="MTELERHLLNALEQLQQDYMQRLNEWESAFVELQKMFSLTQQDNA
                     MLNEQVMQLSQQVQHLSERTERLSQLYSENRR"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(3331..3849)
                     /locus_tag="ECE24377A_RS30655"
     CDS             complement(3331..3849)
                     /locus_tag="ECE24377A_RS30655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001447511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_136751422.1"
                     /translation="MSNLLQTGAEFEKKLKERAESTETMLNDEFSKLEKSVSKAVTSNE
                     TKIKDAIALFTTSTEASLEKHREGVKEAMMQHRKDVLKLAGNTGMMLLGMVLFLFTVSG
                     GTLWYLGGRIQANLEEIRIQEETLQKLNAKTWGVEFVQDGRRKFLVIPQGKSATVIPYQ
                     GKDWVQLTE"
                     /name="MbeB family mobilization protein"
     gene            complement(<3887..4549)
                     /locus_tag="ECE24377A_RS31290"
                     /pseudo=""
     CDS             complement(<3887..4549)
                     /locus_tag="ECE24377A_RS31290"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(4527..4850)
                     /locus_tag="ECE24377A_RS26505"
     CDS             complement(4527..4850)
                     /locus_tag="ECE24377A_RS26505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_000955992.1"
                     /translation="MLTIRVTDDEHARLLERCEGKQLAVWMRRVCLGEPVARSGKLPTL
                     APPLLRQLAAIGNNLNQTARKVNSGLWSSGDRVQVVAALMAIERELRSLRQVVREHGAR
                     DDS"
                     /name="MobC family plasmid mobilization relaxosome protein"
     Typing          complement(158..243)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="8.58e-38"
     Typing          269..812
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.967"
                     /coverage="98.0"
                     /evalue="0.0"
     Typing          complement(2988..4537)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="91.031"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 cttcacgacc acgccgatga gctttaccgc agctgcctcg cacgtttcgg ggatgacggt
       61 gaaaacctct gacacatgca gctcccggag acggtcacag cttgtctgtg agcggatgcc
      121 gggagcagac aagcccgtca gggcgcgtca gcgggtttta gcgggtgtcg gggcgcagcc
      181 atgacccagt cacgtagcga tagcgaagtg tatactggct tagatatgtg gcatcagtgc
      241 agattataag aaaagagcac catatgcggt gtgaaatacc gcacagatgc gtaaggagaa
      301 aatgccgcat caggcgctct tccgcttcct cgctcactga ctcgctacgc tcggtcgttc
      361 ggctgcggcg agcggtatca gctcactcaa agacggtaat gcggttatcc acagaatcag
      421 gggataacgc caaaagaaac atgtgagcaa aaaacaagaa ccaagaaaag gccacgccgc
      481 tggcgttttt ccataggctc cgcccccctg acgagcatca caaaaattga cgctcaagtc
      541 agaggtggcg aaacccgaca ggacttaaag ataccaggcg tttccccctg gaagctccct
      601 cgtgcgctct cctgttccga ccctgccgtt taccgaatac ctgtccgcct ttctcccttc
      661 gggaagcgtg gcgctttctc atagctcacg ctgtaggtat ctcggcccgg tgtaggtcgt
      721 tcgctccaag ctgggctgta tgcacgaacc ccccgttcag cccgactgct gcgccttatc
      781 cggtaactat cgtcttgagt ccaacccggt aagacacgac ttaacgccac tgtcagcagc
      841 cactggtaac tgatttagag gaggagagtc ttgaagttcc taatgtgatg cggctacact
      901 aaaaggacag ctttggtgac tgagctcctc taagccagtt accttcggaa gaaagagttg
      961 gtagctcttg attccggcaa acgaaccacc gttggtagcg gtggtttttt tgtttacagg
     1021 gagtgagatt acgacgagaa caaaaggatc acaagaagat ccactgttta ccagtgatta
     1081 agcttctgca ttggcataca tgttctacac ctgaaattct atagactaga ggttcacatg
     1141 acagagaaaa tccaaggaac agctagcgtt cttaatcaaa ccaaaactta tgaagagctg
     1201 gttcagaaat attcaccaga aatagctaac ggcttactgg caaggtctat caacaatgct
     1261 ttacctaacg caaaaataac tccaaatgac gttgctggat tctgcaaagt gacgacagct
     1321 ttgcgtacag gaaaagttga tctagaaaaa acagtgaaag aagccgatgc cgatgcgaaa
     1381 gccgtttcag caaatatcat tgagggtcta aaaaccaaac aaaaaagcac tgttgaaaaa
     1441 gaatgatttc ccgcaggtac aaaaacgtcg ccctataggg cgacgttttt gtacctgaaa
     1501 caagcaggac taccataata tggttttata cgccatgcat gaaaaagcct acatagaagc
     1561 ttcgagtcaa tagctacaaa gagctcttat ttatggtggc gtattaacaa ccattccatt
     1621 agtgagctac gtaaagcccg tgaactttac cattatggta gtcaaaacaa ttctctataa
     1681 ttttgtagaa ctcattatca ctgagctcaa acttcctgaa aattgagtac gatacaagat
     1741 cagcaagctg aatcagtctt gacgccttag agtccaaaaa taaaggcact tcagagaagt
     1801 tgcgaagttt tccatactca tatccagtat ctttaaacgt acgagcaaga gattgaatac
     1861 ttttttctgt tgacgactta tcaaaaatag ctacacctcg agatgtatca ccttggtgat
     1921 gtaatcgact taaatacatg tcgaaacgag acgatatttg ataaaaagac tctgttatta
     1981 catcctttcc atctaaggag cccttgggca caacgcatgc aaatatgcga atatcccgat
     2041 gcttttgagt aaggagtgct aggcaatctt tgatcgcttg ctttctgtca ttgagagaaa
     2101 actttttcca gccatctcgt ccacctctca tcggcgaacc atgaaattct ctttcataag
     2161 ggtcatcact attaaatcga gccgcaattg cattcatctc tttctctatc cagtgcgttt
     2221 gcttttcaaa cactgatata ccagaaagga caaaatgatt aagggtagga tctgatggtg
     2281 taccagactc atcaacgtat aaaagatgca tctaagactc cttaaacgaa aaatgccgcg
     2341 catttgcgcg gcattttcat gaatgaggca agccagtgcg ataaaaatca catacaccgc
     2401 tatgggcagc gaactgactt aacatcaatg ataacaggca agtgcatatt tgcccaaaca
     2461 atttatacac acactatagc cataagcaat aaaacaatag aaattcaaga agataacttc
     2521 ttcaccgttg ttcttattta ccataacgtc gcattgtacg caccactgaa acgcgttcgg
     2581 cgagatcacg gcagcagaca ggtaaaaatg gcaacaaacc acccgaaaaa ctgccgcgat
     2641 cgcacccggt aaattttaac cacatgcata gctatgcagc catgtgaatc acgcaggaat
     2701 tgccagccag agacagctga aacggatttt tttcatgctt tcggaagcga agaagacggg
     2761 gaccggagcg ggaaaacaga agttcagggg aatgagcgcg atctggcaat agaggcaaaa
     2821 cacagcaaca aaagacacac cagaatcgcg cccgtatgcg ttttaacgcg ttcctgtgtt
     2881 ttcagcaagg tctgactgaa gcgcgttccc ggtgcccccg aaccaaccat tatcccaaaa
     2941 aatgcaccgg aaacgcgctg acaacatttt agcctgtctc tgattaccat cccagcgaag
     3001 ggccatccag tgtccgttcc tgtatttcca gctggcgctc acgctccagg gataactcat
     3061 gttcgcgctc ctgtatcagc cgttcgtccc ttatctcctg ttctcgctgt ataactggct
     3121 caagcgttct gtccgctcgc tcaagtgctg cacctgctga ctcaactgca tgacctgctc
     3181 gttcagcatc gcgttgtcct gttgcgtaag cgaaaacatt ttctgcaatt ccacgaaggc
     3241 gctctcccat tcgttcagcc gctgcatata gtcctgttgc agttgctcta aggcgttcag
     3301 caaatgtctt tccagctccg tcactctgtg tcactccgtc agttgtaccc agtccttccc
     3361 ctgataggga atcaccgttg ccgatttccc ctgcgggatg accagaaatt tccttctccc
     3421 gtcctgcaca aactccacgc cccatgtctt cgcgttcagt ttctgcaatg tttcttcctg
     3481 tatcctgatt tcttccaggt tcgcctgtat ccgcccgcca agataccaga gcgtcccgcc
     3541 actcacggta aacaggaaaa ggaccatccc cagtaacatc atgcccgtat tccctgccag
     3601 ctttaacacg tccttcctgt gctgcatcat cgcctctttc accccttccc ggtgtttttc
     3661 cagcgatgcc tctgtcgacg ttgtgaacag ggctatagcg tctttgattt tcgtctcgtt
     3721 tgaggtcaca gccttgctta cagatttttc gagcttgctg aactcgtcgt tcagcattgt
     3781 ctctgtagat tcggctctct ctttcagctt tttctcgaac tccgcgcccg tctgtaaaag
     3841 attgctcata aaatgctcct ttcagcctga tattcttccc gccgttcggg tctgcaatgc
     3901 tgatactgct tcgcgtcatc ctgaccactt caagccccgc ctctgtgagc gcctgaatca
     3961 catcctgacg gccttttatc tccccgacat gataaagagc gtctatcccc cgtgtaacgc
     4021 tctcagcaag cgcctgtttc gtttccggca ggttatcagg gagagtcagc gtccggcggt
     4081 tctccggggc gttggggtca tgcagcccgt aatggtgatt caccagtgtc tgccaggcat
     4141 caattctcgg cctgtctgcc cggtcgtagt acggctggag gcgttttccg ctctgtagct
     4201 ccatattcgg aatgacaaaa ttaagctcaa gccgcccctt gtcctggtgc tccacccaca
     4261 ggatgctgta ctgatttttt tcgagaccgg gcatcagtac acgctcaaag ctcgccatca
     4321 ctttttcacg ccctcccggc ggcagctcct tctccgcgaa cgacagaaca cctgacgtgt
     4381 atttcttcgc aaatggcgtg gcatcgatga gttcccggac ttcttccgga ttaccctgaa
     4441 gcaccgttgc cccttcccgg tttcgctccc ttcccagcag gtaatcaacc ggaccactgc
     4501 caccgccttt tcccctggca tgaaacttaa ctatcatccc gcgctccatg ttccctgacg
     4561 acctgccgta agctgcgcaa ctctctctcg atggccatca gtgcggccac cacctgaacc
     4621 cggtcaccgg aagaccacag cccgctgttc accttacggg ctgtctgatt caggttattt
     4681 ccgatggcgg ccagctgacg cagtaacggc ggtgccagtg tcggcagttt cccggaacgg
     4741 gcaaccggct cccccaggca gacccgccgc atccataccg ccagttgttt accctcacag
     4801 cgttcaagta acctggcatg ttcatcatca gtaacccgta tagtgagcat cctctcgcgt
     4861 ttcatcggta tcattacccc atgaacagaa atccccctta cacggaggca tcagtgacta
     4921 aacaggaaaa aacagctctt aacatggcgc gctttatcag aagccagaca ttaacgctgc
     4981 tggaaaagct caacgaactg gacgcggatg aacaggcaga catctgtgaa tcg
//
