LOCUS       NC_009789               6199 bp    DNA     circular CON 08-JUN-2024
DEFINITION  Escherichia coli O139:H28 str. E24377A plasmid pETEC_6, complete
            sequence.
ACCESSION   NC_009789
VERSION     NC_009789.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02604038
            Assembly: GCF_000017745.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli O139:H28 str. E24377A
  ORGANISM  Escherichia coli O139:H28 str. E24377A
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 6199)
  AUTHORS   Rasko,D.A., Rosovitz,M.J., Brinkley,C., Myers,G.S.A., Seshadri,R.,
            Cer,R.Z., Jiang,L. and Ravel,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-AUG-2007) The Institute for Genomic Research, 9712
            Medical Center Dr., Rockville, MD 20850, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000017745.1-RS_2024_06_08
            Annotation Date                   :: 06/08/2024 01:09:03
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,187
            CDSs (total)                      :: 5,064
            Genes (coding)                    :: 4,796
            CDSs (with protein)               :: 4,796
            Genes (RNA)                       :: 123
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 268
            CDSs (without protein)            :: 268
            Pseudo Genes (ambiguous residues) :: 0 of 268
            Pseudo Genes (frameshifted)       :: 91 of 268
            Pseudo Genes (incomplete)         :: 172 of 268
            Pseudo Genes (internal stop)      :: 58 of 268
            Pseudo Genes (multiple problems)  :: 48 of 268
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP000798.1.
            Source DNA and bacteria available from Jacques Ravel
            (jravel@tigr.org).
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..6199
                     /organism="Escherichia coli O139:H28 str. E24377A"
                     /mol_type="genomic DNA"
                     /strain="E24377A"
                     /db_xref="taxon:331111"
                     /plasmid="pETEC_6"
     gene            complement(148..306)
                     /locus_tag="ECE24377A_RS31405"
     CDS             complement(148..306)
                     /locus_tag="ECE24377A_RS31405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007772075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_032287700.1"
                     /translation="MHEPPVQSDRCALSGNYQLESNPERHDKTPLAAAISNRSAREDRL
                     RGLEVEA"
                     /name="hypothetical protein"
     gene            877..1026
                     /locus_tag="ECE24377A_RS30720"
                     /old_locus_tag="EcE24377A_B0002"
     CDS             877..1026
                     /locus_tag="ECE24377A_RS30720"
                     /old_locus_tag="EcE24377A_B0002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017880354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001138880.1"
                     /translation="MPSEYDEQLDSTDTQLPGEYDLFDLMAQVTEENLHAPVDFGSPVG
                     REAL"
                     /name="hypothetical protein"
     gene            complement(1770..2210)
                     /locus_tag="ECE24377A_RS01140"
     CDS             complement(1770..2210)
                     /locus_tag="ECE24377A_RS01140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011161230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_005119689.1"
                     /translation="MAWHTVQETLKLTGKSRSQLYRDMAKGLVSYRTGKNDRREFETSE
                     LIRAYGELRTSETPKRHKEGHSKSVVSQAENAQLDVIQQKLDALQQTVTLMLEDKMARE
                     AENRLRNEEREQLQAEISRLADALAQEKKRGFWSRLFRSGSE"
                     /name="hypothetical protein"
     gene            2428..2817
                     /locus_tag="ECE24377A_RS27090"
     CDS             2428..2817
                     /locus_tag="ECE24377A_RS27090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000102614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000102614.1"
                     /translation="MSTELNSGTVGGFGHMGPNDPYNDGHSGSGSSGGSFNGGGNGGHD
                     NSSGSSYTASFGLITGRHPITVPGTKNINSVDLSAVINNIIHHEGARNNMYLDTANNVR
                     VGVTGTGWQCLATAGISAEGKRTFR"
                     /name="hypothetical protein"
     gene            2861..>3265
                     /locus_tag="ECE24377A_RS01145"
                     /pseudo=""
     CDS             2861..>3265
                     /locus_tag="ECE24377A_RS01145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001120888.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="IS91 family transposase"
                     /name="IS91 family transposase"
     gene            complement(3372..4208)
                     /locus_tag="ECE24377A_RS01150"
                     /old_locus_tag="EcE24377A_B0003"
     CDS             complement(3372..4208)
                     /locus_tag="ECE24377A_RS01150"
                     /old_locus_tag="EcE24377A_B0003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000480972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside O-phosphotransferase APH(6)-Id"
                     /protein_id="WP_000480968.1"
                     /translation="MFMPPVFPAHWHVSQPVLIADTFSSLVWKVSLPDGTPAIVKGLKP
                     IEDIADELRGADYLVWRNGRGAVRLLGRENNLMLLEYAGERMLSHIVAEHGDYQATEIA
                     AELMAKLYAASEEPLPSALLPIRDRFAALFQRARDDQNAGCQTDYVHAAIIADQMMSNA
                     SELRGLHGDLHHENIMFSSRGWLVIDPVGLVGEVGFGAANMFYDPADRDDLCLDPRRIA
                     QMADAFSRALDVDPRRLLDQAYAYGCLSAAWNADGEEEQRDLAIAAAIKQVRQTSY"
                     /name="aminoglycoside O-phosphotransferase APH(6)-Id"
     gene            complement(4208..5011)
                     /gene="aph(3'')-Ib"
                     /locus_tag="ECE24377A_RS01155"
                     /old_locus_tag="EcE24377A_B0004"
     ARG             complement(4212..5011)
                     /name="aph(3'')-Ib"
                     /gene="aph(3'')-Ib"
                     /gene_name="aminoglycoside O-phosphotransferase
                     APH(3'')-Ib"
                     /tool="amrfinderplus"
                     /drug_class="AMINOGLYCOSIDE"
                     /identity="100.0"
                     /coverage="100.0"
     gene            complement(5072..5887)
                     /gene="sul2"
                     /locus_tag="ECE24377A_RS01160"
                     /old_locus_tag="EcE24377A_B0005"
     ARG             complement(5076..5887)
                     /name="sul2"
                     /gene="sul2"
                     /gene_name="sulfonamide-resistant dihydropteroate synthase
                     Sul2"
                     /tool="amrfinderplus"
                     /drug_class="SULFONAMIDE"
                     /identity="100.0"
                     /coverage="100.0"
     ARG             complement(3376..4208)
                     /name="aph(6)-Id"
                     /gene="aph(6)-Id"
                     /gene_name="aminoglycoside O-phosphotransferase APH(6)-Id"
                     /tool="amrfinderplus"
                     /drug_class="AMINOGLYCOSIDE"
                     /identity="100.0"
                     /coverage="100.0"
     Typing          669..842
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="99.429"
                     /coverage="100.0"
                     /evalue="1.19e-84"
     Typing          complement(140..745)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="89.593"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 tgaatcgtaa tctcttgctc tgtaaacgaa aaaaccgcct ggggaggcgg tttgttcgaa
       61 ggttaagtca gttggggaac tgcttaaccc ggtaacaggg ttcacgagac cgccattacc
      121 aaaactgttc tttcagtgta gccgcagtca ggcctctact tcaagacctc ttaatctatc
      181 ttctcgtgca ctcctgttac taatggctgc tgccagtggc gttttgtcgt gtctttccgg
      241 gttggactca agttgatagt taccggacaa ggcgcagcgg tcggactgaa cggggggttc
      301 gtgcatacag tccagcttgg agcgaactgc cttcacggaa ctgagtgtca ggcgtggaat
      361 gagaaaccgc ggccataaca gcggaatgac accggtaaac cgaaaggcag gaacaggaga
      421 gcgcacgagg gagctaccag ggggaaacgc ctgggatctt tatagtcctg tcgggtttcg
      481 ccaccactga tttgagcgtc agattttgcg atgcttgtca ggggggcgga gcctatggaa
      541 aaacggcttc gccgtggcct tatctcttct ttgctaagtg tcttcctggt atcttccagg
      601 aaatttccgt ccccgtccgt aagccggtac cgctcgccgc agccgaacga ccgagcgtag
      661 cgagtcagtg agcgaggaag cggaatatct cctgtatcgc atattctgct gacgcgccgg
      721 tgctgccttt tttctcctgc cacatgaagc acttcactga ttttcgcaat cgtggcaaca
      781 tagtaagcca gtatacactc cgctagcgct acatgactgg ttcagggctg cgccccgaaa
      841 cccgctaaca acctctcagc tactggatat caccccatgc catctgaata tgatgaacaa
      901 ctggattcga ctgatacgca gcttcccggc gaatatgacc tttttgattt aatggcgcag
      961 gttactgaag agaacctgca tgcccctgtg gattttgggt cgcctgtcgg ccgggaagcg
     1021 ttatagcttt ttcgcttgcc cgcgtacgtg gtaatactcc ggtattacct tttatttctt
     1081 tattttcatg taattacagt ggatttttaa tacccgggta ttactcgtga aaacgaaata
     1141 ttcctttttt tcttttaatt catgcagttg cgatgaaaat cgcggctgcg ttaggtgtat
     1201 gaccattttg aggttgaaaa ataatcaacc atggcgggtg atttacgcag gttaagggga
     1261 gatcgtgaca aaaaaagcgt tcctcactgt atcgttcatg cctgcatgaa cgggttattc
     1321 ttcctgacta cagaattaca tcgctccttc agttcataca tcacttttac atcacttata
     1381 catcactttt acatcattcc ttcagctcat acgtcacttt catcctctgt gccatttgta
     1441 catcaccccc ttcctgaacg tgctgacagc gggttttccg gctgcgccgg caacgcttca
     1501 cggccacgca ataaattgcg tccccgttca ccgttttcgg atgggaagaa cgccggaaac
     1561 aggacttacc ccggctgaat ggtgtgaatt tccgcgctat gcacttgtgc gcatactcat
     1621 gcatgccgta aaaacagagc ctgcgcgttt ctggcgggtt ttcgggtggt ttgttgcctg
     1681 ttttaccggt ttcccgtcag aaacgccctg agggcctctc aggcggtgct gataacagat
     1741 gttatggtaa atcagagtca cctgcactgt tactctgaac cggagcgaaa cagccgcgac
     1801 cagaatcccc gctttttttc ctgtgccagc gcgtcagcca gacggctaat ttcggcctgt
     1861 agttgttccc tctcctcatt tcgcaggcgg ttttctgctt cccgcgccat cttgtcttca
     1921 agcattaggg taacagtctg ctgcagagcg tccagtttct gctgaatgac gtctagctga
     1981 gcattttccg cctggctaac gacagatttg gagtgtccct ccttgtgcct ttttggtgtc
     2041 tcagaagtgc gcagctcgcc ataggcccga atcagttcac tggtctcgaa ctcccggcga
     2101 tcattttttc ctgtgcgata gctgacaagg cctttagcca tgtcacgata taattgcgag
     2161 cgcgactttc ctgttaattt cagtgtctct tgaactgtgt gccatgccat aaaagtgaca
     2221 gtgtctcctg tgtgtaccgt attgtaacag cagaacatat tactgtttta acacaaaagg
     2281 tctgaggctg cccgtgaggc gtgaaaaata cacaaaaaac ctgttgacgg tgtggttttg
     2341 acgggcgtag tatttcgaat actgtatata aacacattgt tataaataca gtttttgctg
     2401 tttttaaaag tcaaagagga taattttatg agtacagagt taaatagcgg tactgtcggt
     2461 ggttttggtc acatgggacc aaatgacccc tacaatgatg gtcatagcgg ctctggaagt
     2521 tcgggaggta gttttaacgg tggtggtaat ggtggccatg ataatagtag tggttcatct
     2581 tatactgcat cctttggtct catcactggc cgacacccga taactgtccc aggtacgaag
     2641 aatattaatt ctgtcgatct ttctgctgtc attaataaca ttatacatca tgaaggtgca
     2701 cgcaataaca tgtacctaga tactgcgaac aatgtaagag tgggagtgac gggcactggc
     2761 tggcaatgtc tagcaacggc aggcatttcg gctgagggta aaagaacttt ccgctaagcg
     2821 atagactgta tgtaaacaca gtattgcaag gacgcggaac atgcctcatg tggcggccag
     2881 gacggccagc cgggatcggg atactggtcg ttaccagagc caccgacccg agcaaaccct
     2941 tctctatcag atcgttgacg agtattaccc ggcattcgct gcgcttatgg cagagcaggg
     3001 aaaggaattg ccgggctatg tgcaacggga atttgaagaa tttctccaat gcgggcggct
     3061 ggagcatggc tttctacggg ttcgctgcga gtcttgccac gccgagcacc tggtcgcttt
     3121 cagctgtaag cgtcgcggtt tctgcccgag ctgtggggcg cggcggatgg ccgaaagtgc
     3181 cgccttgctg gttgatgaag tactgcctga acaacccatg cgtcagtggg tgttgagctt
     3241 cccgtttcag ctgcgtttcc tgtttggggt cgtttgcggg aaggggcgga atcctacgct
     3301 aaggctttgg ccagcgatat tctccggtga gattgatgtg ttcccagggg ataggagaag
     3361 tcgcttgata tctagtatga cgtctgtcgc acctgcttga tcgcggccgc gatagctaga
     3421 tcgcgttgct cctcttctcc atccgcgttc caagctgcgg aaaggcaccc ataagcgtac
     3481 gcctggtcga gcaggcgacg cggatcgacg tccagcgcac gagagaatgc gtccgccatc
     3541 tgtgcaatgc gtctaggatc gagacaaagg tcgtctctgt cagccggatc gtagaacata
     3601 ttggcggcgc caaagcccac ttcaccgacc agaccgacgg gatctatcac cagccagccg
     3661 cgactggaga acatgatgtt ttcatgatgc agatcgccat gtagcccacg cagttccgag
     3721 gcattgctca tcatttgatc ggctataatc gccgcgtgga cgtagtcagt ttgacaacct
     3781 gcgttttgat catcgcgcgc ccgctgaaac aaagctgcaa agcgatcccg gatcgggaga
     3841 agggcagaag gcaggggttc ctcagatgcg gcatacagct tcgccattag ttccgctgca
     3901 atttcggtcg cctggtagtc gccgtgctcg gcaacgatgt gagagagcat tcgctccccg
     3961 gcatattcga gcaacatcag attgttctca cgaccgagca accggactgc tcccctccca
     4021 ttgcgccata ccagatagtc ggccccgcgc agttcatcag caatgtcttc tataggtttc
     4081 aatcccttga cgattgcagg agtcccgtct ggcaatgaaa ctttccaaac gaggctggaa
     4141 aaggtgtccg caatgagaac aggttgcgaa acgtgccaat gagcaggaaa aacaggcggc
     4201 atgaacatca accccaagtc agagggtcca atcgcagata gaaggcaagg cgttcgcggt
     4261 cgggggcttc gatccccaat acattgaata ggacagcgaa ggcgcgctct gcttcatctg
     4321 gcgctgccca gttctcttcg gcgttagcaa tcatgagtgc caaatcggca tagcgatctg
     4381 ctgttccgag ccgcccaagg tcgatcagac ccgtgcattg aagagtttta gggtccacca
     4441 tgaagttcgg catgcaggga tcaccatggc aaacaaccat atcggtgcgc tcttggtcga
     4501 gccgcaccgg tagctctcgt tcgacacgag ccaaaagatc gagctgcggc gtactcttgt
     4561 cctcgtccgg taagaagtcg ggattgacgg cattgcggga caccacatca acggcgcgtc
     4621 cgaacattcg cgacagcctg cgctcaaacg gacattgatc aaccgatagg ctgtgaacag
     4681 cgccaagttg ctgccccatt gacggccacg ctttgagcaa atccgctcca gacagatcag
     4741 ccgccggtac tcccggaatt gccgttatca ccaagcatgc accctcctgt tcctcctgcc
     4801 agttgatgac ctcggggcaa gccacacctc gacctttgag ccaaatgagg cggtcacgct
     4861 ctccagcgag ctcaccgcgg cgggaagcag gtgcgatttt cgcgaaggca tgcccgtcac
     4921 cacgtcgaaa aacaaaatca ccagattctc cgcctctgac aggcaaccag tcagaatgcg
     4981 attcaccaaa aaaaatatta gttcgattca atggaggttc cttcagtttt ctgatgaagc
     5041 gcgaatatag agaaatatcc cgaatgtgca gttaacgaat tcttgcggtt tctttcagcg
     5101 ccgccaatac cgccagcccg tcgcgcaagg ggcgcggctc gtgtgtgcgg atgaagtcag
     5161 ctccacctgc ggcggcggca agctctgcag cgagtgtcgc ggccccgaca tcccccggac
     5221 cacggcctgt gagcgcgcgc agaaaggatt tgcgcgaaac agacagaagc accggcaaat
     5281 cgaagcgcag ccgcaattca tcgaaccgcg ccagcaccga gagcgaggtt tcgggagcag
     5341 cccccagaaa aaaccccatg ccgggatcaa ggacaaggcg gttgcgtttg ataccggcac
     5401 ccgtcagcgc cgcgatgcgc gcgtcaaaga acgccgcaat gtgatccatg atgtcgccag
     5461 cgggtgcctc gcgccgatct gcctgcccgt cttgcaccga atgcataacg acgagtttgg
     5521 cagatgattt cgccaattgc ggatagaacg cagcgtctgg aaaaccgcga atatcattga
     5581 gataggccac accacgcgac aaggcatagg cttgcgtcgc gggttgataa ctgtcgagcg
     5641 agacgggaat gccatctgcc ttgagcgcgt ccagcaccgg cgcgatacgc gcgatttctg
     5701 tgtcggacga aacaggcgcg gcgtcgggat tgctggatgc cggaccgagg tcgatcacat
     5761 ctgccccctc ggccatcagc ttacgcgcct gcgcaatggc tgcgtctggc gccagatacc
     5821 ggcctccatc ggagaaactg tccgaggtta tgttgacgat gccgaaaatg atgagcgatt
     5881 tattcatggg ggcttctata ataataataa tcgagcatga gtctcatacg gatgctcggg
     5941 tcgaaaggga atccccaggc gagtaacctg tttgcggtga tccgtttcat gatgatgtat
     6001 ctgtagcatt ttggaaataa atatatcatc tctcaataag tagatatatt tatctttttt
     6061 gcttctttgg tgctgcaagt caccaatacg agggaaacct gttacggagc ggtttaaccg
     6121 taatcaacag tgactggtgt catgttcgga agattaattg atagtaatct acaaaggatc
     6181 ttcttgagat ccttttcaa
//
