LOCUS       NC_009347               2101 bp    DNA     circular CON 17-APR-2024
DEFINITION  Shigella sonnei Ss046 plasmid pSS046_spC, complete sequence.
ACCESSION   NC_009347
VERSION     NC_009347.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02603602
            Assembly: GCF_000092525.1
KEYWORDS    RefSeq.
SOURCE      Shigella sonnei Ss046
  ORGANISM  Shigella sonnei Ss046
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2101)
  AUTHORS   Yang,F., Yang,J., Zhang,X., Chen,L., Jiang,Y., Yan,Y., Tang,X.,
            Wang,J., Xiong,Z., Dong,J., Xue,Y., Zhu,Y., Xu,X., Sun,L., Chen,S.,
            Nie,H., Peng,J., Xu,J., Wang,Y., Yuan,Z., Wen,Y., Yao,Z., Shen,Y.,
            Qiang,B., Hou,Y., Yu,J. and Jin,Q.
  TITLE     Genome dynamics and diversity of Shigella species, the etiologic
            agents of bacillary dysentery
  JOURNAL   Nucleic Acids Res 33 (19), 6445-6458 (2005)
   PUBMED   16275786
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2101)
  AUTHORS   Yang,J., Yang,F., Chen,L. and Jin,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-MAR-2007) State Key Laboratory for Moleclular Virology
            and Genetic Engineering, Microbial Genome Center of Chinese Ministry
            of Public Health, 100 YingXin Street, XuanWu, Beijing 100052,
            P.R.China
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000092525.1-RS_2024_04_17
            Annotation Date                   :: 04/17/2024 01:28:45
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,158
            CDSs (total)                      :: 5,028
            Genes (coding)                    :: 4,325
            CDSs (with protein)               :: 4,325
            Genes (RNA)                       :: 130
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 97
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 703
            CDSs (without protein)            :: 703
            Pseudo Genes (ambiguous residues) :: 0 of 703
            Pseudo Genes (frameshifted)       :: 203 of 703
            Pseudo Genes (incomplete)         :: 506 of 703
            Pseudo Genes (internal stop)      :: 119 of 703
            Pseudo Genes (multiple problems)  :: 118 of 703
            Pseudo Genes (short protein)      :: 3 of 703
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP000643.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2101
                     /organism="Shigella sonnei Ss046"
                     /mol_type="genomic DNA"
                     /strain="Ss046"
                     /db_xref="taxon:300269"
                     /plasmid="pSS046_spC"
     gene            703..1668
                     /locus_tag="SSON_RS26680"
                     /old_locus_tag="SSON_PC01"
     CDS             703..1668
                     /locus_tag="SSON_RS26680"
                     /old_locus_tag="SSON_PC01"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012421200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_001287824.1"
                     /translation="MSEDKFLSDYSPRDAVWDTQRTLTDSVGGIYQTAAEFERYALRMA
                     SCSGLLRFGWSTIMETGETRLRLRSAQFCRVRHCPVCQWRRTLMWQARFYQALPKIVVD
                     YPSSRWLFLTLTVRNCEIGELGTVLTAMNAAFKRMEKRKELSPVQGWIRATEVTRGKDG
                     SAHPHFHCLLMVQPSWFKGKNYVKHERWVELWRDCLRVNYEPNIDIRAVKTKTGEVVAN
                     VAEQLQSAVAETLKYSVKPEDMANDPEWFLELTRQLHKRRFISTGGALKNVLQLDRETN
                     EDLVIADDVGDGTDDGKRTAFVWDSGKRRYKRAPEKDKSD"
                     /name="protein rep"
     gene            1672..1938
                     /locus_tag="SSON_RS26685"
     CDS             1672..1938
                     /locus_tag="SSON_RS26685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001024536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001024536.1"
                     /translation="MNINIEYLNGNKTIGLFFLRSEAVIPDRFKNLILLIDGLSFGTFG
                     FHPHEGFEDELILYIQKTNERVKTLFVKIDLNGIKFGFLRTHS"
                     /name="hypothetical protein"
     Typing          1097..1328
                     /name="Col(BS512)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.05e-118"
ORIGIN
        1 aacactctgc gagtggtata ttttccccgg attatcgtcc tgagcctgcc gctggctctc
       61 tttctaccgc ctcgctttgc tcgttgctca acgcctcaca gacacggatt aaaatccgca
      121 tccgttcacc gttttttaaa gtccgttaaa agcatgatgc catctccgag agttaatctc
      181 gtcaaatgct aaatcgtggg ggtccccttt ggggttccga tttagtgatt gacgacacca
      241 ccgattaaaa aacttatgcg gggtggatgg tttcacgaag tgaggccatc cacctgtaag
      301 acagggtttt gtttttattc cctgttttgg tgatcgggtg tgtggaaaag gttggggtaa
      361 gccgttcggg ggtgcttgtt ttggggggtt aaaattgtgg ttattttttg cgcaattctc
      421 gcgcgtgatc cttgtattta tacttaaggg ataaatggcg gatatgaaat agtggtttag
      481 cccagtaatg acgaggcttt gagtgggttt tgacaggtca aagaaaatgg agcagaattg
      541 aggcgttttt aatcggcgtt ggggagtgcg tcaacactcc ccaacatttc gaatgtgtca
      601 cctcagcggc aaactctggt gacatgtact ggctcgcaat gcacaggtac gtgatgaata
      661 taccacatca aatcacagcc tgcccagatc ggagcaggct taatgtcaga agataaattc
      721 ctttcggact acagcccccg tgatgcagtt tgggataccc agcgcacgct taccgattct
      781 gtcgggggta tctaccagac tgctgctgaa ttcgagcgct atgcactccg tatggcctcc
      841 tgtagcggtt tgttacgttt tggttggtct accatcatgg aaaccggaga aacgcgccta
      901 cggcttcgta gtgcgcaatt ttgccgtgtc cgtcattgcc ctgtctgcca gtggagaaga
      961 accctcatgt ggcaagcccg tttttatcag gctctaccga aaatcgttgt ggattacccg
     1021 tcttcccgat ggttgtttct gacgttaact gtcaggaact gcgagatagg tgaacttgga
     1081 acagtcctta cagcaatgaa tgcggcgttt aagcgaatgg aaaagcgaaa ggagctatca
     1141 cctgttcagg ggtggatcag ggctacggag gtgacgcgag gtaaggatgg cagcgcacat
     1201 ccgcattttc actgtctgct gatggtgcaa ccttcttggt ttaaagggaa gaactacgtt
     1261 aagcacgaac gttgggtaga actctggcgc gattgcttgc gggtgaacta tgagccgaat
     1321 atcgatattc gggcagtaaa aactaagaca ggtgaggttg tggccaacgt tgccgagcaa
     1381 ctgcaaagcg cggttgctga aacgctgaaa tactccgtta aaccggaaga tatggcaaac
     1441 gatcctgagt ggtttcttga gctgacgcgg cagcttcaca agcgccgttt tatctcgacc
     1501 ggtggggcgc taaaaaacgt cctccagttg gatcgagaaa ccaatgagga tcttgtcatt
     1561 gccgacgatg taggggatgg cactgatgac gggaagcgga cggcgtttgt ctgggattca
     1621 ggtaaacggc gttacaaacg cgcccctgag aaggataaat cggattaacg tatgaatatt
     1681 aatattgaat acctgaatgg aaataagact attggtttat tttttttaag aagtgaagcg
     1741 gtgattcctg acaggtttaa aaaccttatt ttgcttattg atggattaag ttttggcaca
     1801 tttggttttc atccgcacga aggttttgag gatgaattaa ttttatatat tcagaaaaca
     1861 aacgagaggg taaaaactct ttttgtgaaa atagatttaa acggtatcaa gtttggattt
     1921 ttaagaacgc attcttagtt ctggaaaaga gccagcggca ggctgaggtg ataggtacga
     1981 gattgcatgc aatctctagt gctctgtcta tcctgcatta tcctcagcat tatcctcagc
     2041 attatcctca gccttgccaa ctcgacacca atgcaggata gacaatccga tgtcaaatgt
     2101 t
//
