LOCUS       NC_007170               2366 bp    DNA     circular CON 17-FEB-2024
DEFINITION  Staphylococcus haemolyticus JCSC1435 plasmid pSHaeB, complete
            sequence.
ACCESSION   NC_007170
VERSION     NC_007170.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00061066
            Assembly: GCF_000009865.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus haemolyticus JCSC1435
  ORGANISM  Staphylococcus haemolyticus JCSC1435
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1
  AUTHORS   Takeuchi,F., Watanabe,S., Baba,T., Yuzawa,H., Ito,T., Morimoto,Y.,
            Kuroda,M., Cui,L., Takahashi,M., Ankai,A., Baba,S., Fukui,S.,
            Lee,J.C. and Hiramatsu,K.
  TITLE     Whole-genome sequencing of staphylococcus haemolyticus uncovers the
            extreme plasticity of its genome and the evolution of
            human-colonizing staphylococcal species
  JOURNAL   J Bacteriol 187 (21), 7292-7308 (2005)
   PUBMED   16237012
REFERENCE   2  (bases 1 to 2366)
  AUTHORS   Takahashi,M., Fukui,S., Baba,S., Ankai,A., Terui,Y., Fukuhara,Y.,
            Oguchi,A., Hongo,Y., Yanagi-i,M., Watanabe,S., Takeuchi,F.,
            Kuroda,M., Ito,T., Cui,L., Ma,X., Morimoto,Y., Yuzawa,H., Baba,T.,
            Hiramatsu,K. and Isono,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-DEC-2003) Contact:Mikio Takahashi National Institute
            of Technology and Evaluation, Bio Technology Division Tohoku Branch;
            4-5-18 Higashisendai Miyagino-ku, Sendai, Miyagi 983-0833, Japan URL
            :http://www.bio.nite.go.jp
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/17/2024 01:41:40
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,663
            CDSs (total)                      :: 2,581
            Genes (coding)                    :: 2,501
            CDSs (with protein)               :: 2,501
            Genes (RNA)                       :: 82
            rRNAs                             :: 6, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 62
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 80
            CDSs (without protein)            :: 80
            Pseudo Genes (ambiguous residues) :: 0 of 80
            Pseudo Genes (frameshifted)       :: 38 of 80
            Pseudo Genes (incomplete)         :: 39 of 80
            Pseudo Genes (internal stop)      :: 17 of 80
            Pseudo Genes (multiple problems)  :: 13 of 80
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            AP006718.1.
            Takeuchi,F., Watanabe,S., Baba,T., Yuzawa,H., Ito,T., Morimoto,Y.,
            Kuroda,M., Cui,L., and Hiramatsu,K. are at the Department of
            Microbiology and Infection Control Science, Juntendo University,
            Tokyo 1138421, Japan.
            Takahashi,M., Ankai,A., Baba,S. and Fukui,S. are at the National
            Institute of Technology and Evaluation, Miyagi 9830833, Japan.
            Lee,J.C. is at the Department of Medicine, Brigham and Women's
            Hospital and Harvard Medical School, Boston, Massachusetts 02115,
            USA.
            Present address of Yuzawa,H.: Laboratory of Social Genome Science,
            Department of Medical Genome Science, Graduate School of Frontier
            Science, University of Tokyo, Tokyo 1088639, Japan.
            Present address of Kuroda,M.: Department of Microbiology,
            University of Tsukuba, Ibaraki 3058575, Japan.
            Please visit our web site
            URL:http://www.bio.nite.go.jp/
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2366
                     /organism="Staphylococcus haemolyticus JCSC1435"
                     /mol_type="genomic DNA"
                     /strain="JCSC1435"
                     /db_xref="taxon:279808"
                     /plasmid="pSHaeB"
     gene            319..1053
                     /gene="erm(C)"
                     /locus_tag="SH_RS12965"
                     /old_locus_tag="pSHaeB01"
     ARG             320..1050
                     /name="erm(C)"
                     /gene="erm(C)"
                     /gene_name="23S rRNA (adenine(2058)-N(6))-methyltransferase
                     Erm(C)"
                     /tool="amrfinderplus"
                     /drug_class="LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN"
                     /identity="100.0"
                     /coverage="100.0"
     gene            1501..1977
                     /locus_tag="SH_RS12970"
                     /old_locus_tag="pSHaeB02"
     CDS             1501..1977
                     /locus_tag="SH_RS12970"
                     /old_locus_tag="pSHaeB02"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000664727.1"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA];
                     GO:0006276 - plasmid maintenance [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="WP_000664727.1"
                     /translation="MKERYGTVYKGSQRLIDEESGEVIEVDKLYRKQTSGNFVKAYIVQ
                     LISMLDMIGGKKLKIVNYILDNVHLSNNTMIATTREIAKATGTSLQTVITTLKILEEGN
                     IIKRKTGVLMLNPELLMRGDDQKQKYLLLEFGNFEQEANEKQENALSDYYSFKD"
                     /name="replication/maintenance protein RepL"
     ARG             320..1053
                     /name="ErmC"
                     /gene="ErmC"
                     /gene_name="Erm 23S ribosomal RNA methyltransferase"
                     /tool="rgi"
                     /drug_class="macrolide antibiotic; lincosamide antibiotic;
                     streptogramin antibiotic; streptogramin A antibiotic;
                     streptogramin B antibiotic"
                     /identity="99.18"
                     /coverage="100.0"
     Typing          1502..1987
                     /name="rep_cluster_1947"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.591"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ttttctcggc ataaagccat gctctgacgc ttaaatgcac taatgcctta aaaaaacatt
       61 aaagtctaac acactagact tatttacttc gtaattaagt cgttaaaccg tgtgctctac
      121 gaccaaaagt ataaaacctt taagaacttt cttttttctt gtaaaaaaag aaactagata
      181 aatctctcat atcttttatt caataatcgc atcagattgc agtataaatt taacgatcac
      241 tcatcatgtt catatttatc agagctcgtg ctataattat actaatttta taaggaggaa
      301 aaaataaaga gggttataat gaacgagaaa aatataaaac acagtcaaaa ctttattact
      361 tcaaaacata atatagataa aataatgaca aatataagat taaatgaaca tgataatatc
      421 tttgaaatcg gctcaggaaa aggggatttt acccttgaat tagtacagag gtgtaatttc
      481 gtaactgcca ttgaaataga ccataaatta tgcaaaacta cagaaaataa acttgttgat
      541 cacgataatt tccaagtttt aaacaaggat atattgcagt ttaaatttcc taaaaaccaa
      601 tcctataaaa tatttggtaa tataccttat aacataagta cggatataat acgcaaaatt
      661 gtttttgata gtatagctga tgagatttat ttaatcgtgg aatacgggtt tgctaaaaga
      721 ttattaaata caaaacgctc attggcatta tttttaatgg cagaagttga tatttctata
      781 ttaagtatgg ttccaagaga atattttcat cctaaaccta aagtgaatag ctcacttatc
      841 agattaaata gaaaaaaatc aagaatatca cacaaagata aacagaagta taattatttc
      901 gttatgaaat gggttaacaa agaatacaag aaaatattta caaaaaatca atttaacaat
      961 tccttaaaac atgcaggaat tgacgattta aacaatatta gctttgaaca attcttatct
     1021 cttttcaata gctataaatt atttaataag taagttaagg gatgcataaa ctgcatccct
     1081 taacttgttt ttcgtgtacc tattttttgt gaatcgatta tgtcttttgc gcattcactt
     1141 cttttctata taaatatgag cgaagcgaat aagcgtcgga aaagcagcaa aaagtttcct
     1201 ttttgctgtt ggagcatggg ggttcagggg gtgcagtatc tgacgtcaat gccgagcgaa
     1261 agcgagccga agggtagcat ttacgttaga taaccccctg atatgctccg acgctttata
     1321 tagaaaagaa gattcaacta ggtaaaatct taatataggt tgagatgata aggtttataa
     1381 ggaatttgtt tgttctaatt tttcactcat tttgttctaa tttcttttaa caaatgttct
     1441 ttttttttta gaacagttat gatatagtta gaatagttta aaataaggag tgagaaaaag
     1501 atgaaagaaa gatatggaac agtctataaa ggctctcaga ggctcataga cgaagaaagt
     1561 ggagaagtca tagaggtaga caagttatac cgtaaacaaa cgtctggtaa cttcgtaaag
     1621 gcatatatag tgcaattaat aagtatgtta gatatgattg gcggaaaaaa acttaaaatc
     1681 gttaactata tcctagataa tgtccactta agtaacaata caatgatagc tacaacaaga
     1741 gaaatagcaa aagctacagg aacaagtcta caaacagtaa taacaacact taaaatctta
     1801 gaagaaggaa atattataaa aagaaaaact ggagtattaa tgttaaaccc tgaactacta
     1861 atgagaggcg acgaccaaaa acaaaaatac ctcttactcg aatttgggaa ctttgagcaa
     1921 gaggcaaatg aaaaacaaga aaatgcatta tctgattatt attctttcaa ggactagtat
     1981 aacataaaat cgtctacaaa tagacaaaaa acctgcacgc ttaatgtaga tcaaaagctt
     2041 aacgcaaatg aaatagattg acctcccaat aacaccacgt agttattggg aggtcaatct
     2101 atgaaatgcg attaagcttt ttctaattca cataagcgtg caggtttaaa gtacataaaa
     2161 aatataatga aaaaaagcat cattatacta acgttatacc aacattatac tctcattata
     2221 ctaattgctt attccaattt cctattggtt ggaaccaaca ggcgttagtg tgttgttgag
     2281 ttggtacttt catgggatta atcccatgaa acccccaacc aactcgccaa agctttggct
     2341 aacacacacg ccattccaac caatag
//
