LOCUS       NC_007169               2300 bp    DNA     circular CON 17-FEB-2024
DEFINITION  Staphylococcus haemolyticus JCSC1435 plasmid pSHaeA, complete
            sequence.
ACCESSION   NC_007169
VERSION     NC_007169.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00061066
            Assembly: GCF_000009865.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus haemolyticus JCSC1435
  ORGANISM  Staphylococcus haemolyticus JCSC1435
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1
  AUTHORS   Takeuchi,F., Watanabe,S., Baba,T., Yuzawa,H., Ito,T., Morimoto,Y.,
            Kuroda,M., Cui,L., Takahashi,M., Ankai,A., Baba,S., Fukui,S.,
            Lee,J.C. and Hiramatsu,K.
  TITLE     Whole-genome sequencing of staphylococcus haemolyticus uncovers the
            extreme plasticity of its genome and the evolution of
            human-colonizing staphylococcal species
  JOURNAL   J Bacteriol 187 (21), 7292-7308 (2005)
   PUBMED   16237012
REFERENCE   2  (bases 1 to 2300)
  AUTHORS   Takahashi,M., Fukui,S., Baba,S., Ankai,A., Terui,Y., Fukuhara,Y.,
            Oguchi,A., Hongo,Y., Yanagi-i,M., Watanabe,S., Takeuchi,F.,
            Kuroda,M., Ito,T., Cui,L., Ma,X., Morimoto,Y., Yuzawa,H., Baba,T.,
            Hiramatsu,K. and Isono,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-DEC-2003) Contact:Mikio Takahashi National Institute
            of Technology and Evaluation, Bio Technology Division Tohoku Branch;
            4-5-18 Higashisendai Miyagino-ku, Sendai, Miyagi 983-0833, Japan URL
            :http://www.bio.nite.go.jp
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/17/2024 01:41:40
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,663
            CDSs (total)                      :: 2,581
            Genes (coding)                    :: 2,501
            CDSs (with protein)               :: 2,501
            Genes (RNA)                       :: 82
            rRNAs                             :: 6, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 62
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 80
            CDSs (without protein)            :: 80
            Pseudo Genes (ambiguous residues) :: 0 of 80
            Pseudo Genes (frameshifted)       :: 38 of 80
            Pseudo Genes (incomplete)         :: 39 of 80
            Pseudo Genes (internal stop)      :: 17 of 80
            Pseudo Genes (multiple problems)  :: 13 of 80
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            AP006717.1.
            Takeuchi,F., Watanabe,S., Baba,T., Yuzawa,H., Ito,T., Morimoto,Y.,
            Kuroda,M., Cui,L., and Hiramatsu,K. are at the Department of
            Microbiology and Infection Control Science, Juntendo University,
            Tokyo 1138421, Japan.
            Takahashi,M., Ankai,A., Baba,S. and Fukui,S. are at the National
            Institute of Technology and Evaluation, Miyagi 9830833, Japan.
            Lee,J.C. is at the Department of Medicine, Brigham and Women's
            Hospital and Harvard Medical School, Boston, Massachusetts 02115,
            USA.
            Present address of Yuzawa,H.: Laboratory of Social Genome Science,
            Department of Medical Genome Science, Graduate School of Frontier
            Science, University of Tokyo, Tokyo 1088639, Japan.
            Present address of Kuroda,M.: Department of Microbiology,
            University of Tsukuba, Ibaraki 3058575, Japan.
            Please visit our web site
            URL:http://www.bio.nite.go.jp/
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2300
                     /organism="Staphylococcus haemolyticus JCSC1435"
                     /mol_type="genomic DNA"
                     /strain="JCSC1435"
                     /db_xref="taxon:279808"
                     /plasmid="pSHaeA"
     gene            122..541
                     /locus_tag="SH_RS12955"
                     /old_locus_tag="pSHaeA01"
     CDS             122..541
                     /locus_tag="SH_RS12955"
                     /old_locus_tag="pSHaeA01"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016922374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fosfomycin resistance bacillithiol transferase
                     FosB1"
                     /protein_id="WP_011276918.1"
                     /translation="MIKGINHITYSVSNIAKSIEFYRDILGADILVESETSAYFNLGGI
                     WLALNEEKNIPRSEIKYSYTHIAFTISDNDFEDWYNWLKENEVNILEGRDRDIRDKKSI
                     YFTDLDGHKLELHTGSLEDRLSYYKEAKPHMNFYI"
                     /name="fosfomycin resistance bacillithiol transferase
                     FosB1"
     gene            757..1761
                     /locus_tag="SH_RS12960"
                     /old_locus_tag="pSHaeA02"
     CDS             757..1761
                     /locus_tag="SH_RS12960"
                     /old_locus_tag="pSHaeA02"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020368559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_011276919.1"
                     /translation="MHFYTTGYIDENQDNETLKDMTKSGKQRPWREKKIDNVSYADILE
                     ILKIKKAFNVKQCGNVLEFKPTDEGYLKLHKTWFCKSKLCPVCNWRRAMKNSYQAQRVI
                     EEVVKEKPKARWLFLTLSTRNAIDGETLEQSLKHLTKAFHRLTKYKKVSKNLVGFMRST
                     EVTVNKNDGSYNQHMHVLLCVENAYFRKKENYITQTEWVDLWQKALQVNYRPVANIKAI
                     KPNQKGDKDIQAAIKETSKYSVKSSDFLTDDDERNQEIVNDLEKGLYRKRMLSYGGLLK
                     QKHKILNLDDAEDGNLINTSDEDKTTDEEEKAHSITAIWNFEKQNYYLKNLKR"
                     /name="protein rep"
     gene            2079..2219
                     /locus_tag="SH_RS13695"
     CDS             2079..2219
                     /locus_tag="SH_RS13695"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_154392081.1"
                     /translation="MKKGALTILEFLYICKKIIDILVALATVFEEKTAKMLAKITKKKK
                     K"
                     /name="hypothetical protein"
     ARG             123..538
                     /name="fosB1"
                     /gene="fosB1"
                     /gene_name="fosfomycin resistance bacillithiol transferase
                     FosB1"
                     /tool="amrfinderplus"
                     /drug_class="FOSFOMYCIN"
                     /identity="100.0"
                     /coverage="100.0"
     Typing          758..1761
                     /name="rep_cluster_1017"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gagctattaa gccgaccatt cgacaagttt tgggattgtt aagggttccg aggctcaacg
       61 tcaataaagc aattggaata aagcaattat gttaaaattt ttaaaaaaag ggagggagaa
      121 tatgattaaa ggaataaatc atattactta ttcggtttct aatatagcta aatcaattga
      181 attttacaga gatattttag gggctgacat tttagttgaa agtgagacct cggcctattt
      241 taatttaggt ggtatatggt tagctttgaa cgaagaaaaa aatattccta gaagcgaaat
      301 taaatattcg tatactcata tagcatttac aatttcagat aacgattttg aagattggta
      361 taactggttg aaagaaaatg aagtaaatat tcttgaaggt agagatagag atattagaga
      421 taaaaaatca atatatttca ctgatttaga tggtcataaa ttagaattgc atacaggaag
      481 tttagaagat agattgagtt attataaaga ggctaaacct catatgaatt tttatattta
      541 aaacaaagtt atgtgctttg ttttgaaacg agtgaaaacg agtttcttct tgtcttgata
      601 ctatatagaa ataacaatct tttttaaaat gttcgtcaaa tgttgatgtg agagtgtttg
      661 gaatgttttt tatgcgtgaa agaaaagttt gacatgaaaa aaccccagtt atatgattaa
      721 ggtgtcgaat ctaaatcaaa actgggggct ttttatatgc atttttatac tacaggatat
      781 atagacgaaa atcaagataa tgaaacatta aaagatatga caaaaagtgg gaaacaacgc
      841 ccatggagag aaaagaaaat tgataatgtg agctatgcag atatactgga aattttaaaa
      901 attaaaaagg cttttaacgt aaaacaatgt ggtaacgtct tagaatttaa accgactgat
      961 gagggttatt tgaagttaca taagacatgg ttttgtaagt caaaattatg cccagtttgt
     1021 aattggaggc gtgctatgaa aaatagttat caagctcaaa gagtaattga agaagttgtt
     1081 aaagaaaagc cgaaagcacg ttggttgttt ttaactcttt caacaagaaa tgcgatagat
     1141 ggtgaaactt tagaacaaag tttaaaacac ttaacaaaag cttttcatag attaactaaa
     1201 tataaaaaag ttagtaaaaa tttagttggt tttatgcgtt caactgaagt aacagttaat
     1261 aaaaatgacg gtagttataa tcaacatatg cacgttttgt tatgtgttga aaatgcgtat
     1321 tttagaaaaa aggaaaacta tattacgcag acggaatggg tcgatttatg gcaaaaagca
     1381 ttacaagtta attatcgacc agtagcaaat attaaagcga tcaaaccaaa ccaaaaaggc
     1441 gataaagata ttcaagcagc tatcaaagaa acctctaaat attcggttaa gtcatctgat
     1501 tttttaactg atgatgatga aagaaatcaa gaaatcgtga atgatttgga aaaaggttta
     1561 taccgaaaac gtatgttgag ttatggtgga ttgcttaaac aaaaacataa aattttaaat
     1621 ttagacgatg ccgaagatgg caatttaatt aatacaagtg acgaagataa aacaacagac
     1681 gaagaagaaa aagcacattc aattacggca atttggaatt ttgaaaaaca aaattattac
     1741 ttgaaaaatt tgaaacgtta gcttaaaagc tagcgttttt ttatgctttt ttgcccctgc
     1801 gggaactata gcgttcaacc ggcatggttg accatttttt atgctaattt ttaaatttgc
     1861 atgtagatgg gcagtgtcta aaaaattcgc cactggttaa gcaaaaattt ttgttttgtt
     1921 tttctgattt ttaaatttag ctcatatttg cgttttaaga gccgttaaat agttttgggt
     1981 ataaatatat ataaaatacc cctaaatgct ctaaaaagta ccttaaaatt gcaaataagg
     2041 gtatttaaag ttttaacaac tcttgtgata aagtctgtat gaaaaaagga gctttaacta
     2101 ttttggaatt tttatatatt tgtaaaaaaa tcatagatat tttagttgct ttagcaacag
     2161 tttttgaaga aaaaacagcg aaaatgttag ctaaaatcac aaagaaaaag aaaaaataga
     2221 acacgcattt atgccgagaa aatttattga tgttgagaag aacccttaac taaacttgga
     2281 gacgaatgtc ggcatagcgt
//
