LOCUS       NC_006815               3208 bp    DNA     circular CON 27-JAN-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Typhimurium plasmid
            pU302S, complete sequence.
ACCESSION   NC_006815
VERSION     NC_006815.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14224258
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Typhimurium (Salmonella
            typhimurium)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhimurium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3208)
  AUTHORS   Chen,C.Y., Nace,G.W., Solow,B. and Fratamico,P.
  TITLE     Complete nucleotide sequences of 84.5- and 3.2-kb plasmids in the
            multi-antibiotic resistant Salmonella enterica serovar Typhimurium
            U302 strain G8430
  JOURNAL   Plasmid 57 (1), 29-43 (2007)
   PUBMED   16828159
REFERENCE   2  (bases 1 to 3208)
  AUTHORS   Chen,C.-Y., Nace,G.W., Briggs,C., Solow,B. and Fratamico,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-JUL-2003) Eastern Regional Research Center,
            Agriculture Research Service, U. S. Department of Agriculture, 600
            E. Mermaid Ln., Wyndmoor, PA 19038, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/27/2024 13:48:37
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6
            CDSs (total)                      :: 6
            Genes (coding)                    :: 5
            CDSs (with protein)               :: 5
            Genes (RNA)                       :: 0
            tRNAs                             :: 0
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 1
            CDSs (without protein)            :: 1
            Pseudo Genes (ambiguous residues) :: 0 of 1
            Pseudo Genes (frameshifted)       :: 0 of 1
            Pseudo Genes (incomplete)         :: 1 of 1
            Pseudo Genes (internal stop)      :: 0 of 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            AY333433.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3208
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhimurium"
                     /mol_type="genomic DNA"
                     /strain="G8430"
                     /serovar="Typhimurium"
                     /sub_species="enterica"
                     /db_xref="taxon:90371"
                     /plasmid="pU302S"
                     /note="phage type U302"
     gene            complement(382..495)
                     /locus_tag="HS378_RS00030"
     CDS             complement(382..495)
                     /locus_tag="HS378_RS00030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001422066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001712890.1"
                     /translation="MHEPPVQPDRCALSGNYRLESNPERHDLTPLAAAIGN"
                     /name="hypothetical protein"
     gene            699..854
                     /locus_tag="HS378_RS00005"
     CDS             699..854
                     /locus_tag="HS378_RS00005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016570191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001427892.1"
                     /translation="MSVDFCDARQGGGAYGKTASALACSGALLFAHMFFPALSPDSVDN
                     RITAFE"
                     /name="hypothetical protein"
     gene            complement(983..1177)
                     /locus_tag="HS378_RS00010"
                     /old_locus_tag="pU302Sp02"
     CDS             complement(983..1177)
                     /locus_tag="HS378_RS00010"
                     /old_locus_tag="pU302Sp02"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_001041640.1"
                     /translation="MNKQQQTVLNMAGFIKSQSLTLLEKLDALDADEQAAMCEKLHELA
                     EELQNSIQTRFEAENRTGI"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            1461..1784
                     /gene="mobA"
                     /locus_tag="HS378_RS00015"
                     /old_locus_tag="pU302Sp03"
     CDS             1461..1784
                     /gene="mobA"
                     /locus_tag="HS378_RS00015"
                     /old_locus_tag="pU302Sp03"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_052604.1"
                     /GO_process="GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid mobilization protein MobA"
                     /protein_id="WP_000166966.1"
                     /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRA
                     AALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRL
                     MAD"
                     /name="mobA"
     gene            <2029..>2124
                     /locus_tag="HS378_RS00025"
                     /pseudo=""
     CDS             <2029..>2124
                     /locus_tag="HS378_RS00025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013356662.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /name="amino acid ABC transporter substrate-binding
                     protein"
     gene            2270..3085
                     /locus_tag="HS378_RS00020"
                     /old_locus_tag="pU302Sp04"
     CDS             2270..3085
                     /locus_tag="HS378_RS00020"
                     /old_locus_tag="pU302Sp04"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032492145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside O-phosphotransferase APH(3')-Ia"
                     /protein_id="WP_000018330.1"
                     /translation="MSHIQRETSCSRQRLNSNLDADLYGYKWARDNVGQSGATIYRLYG
                     KPDAPELFLKHGKGSVANDVTDEMVRLNWLTEFMPLPTIKHFIRTPDDAWLLTTAIPGK
                     TAFQVLEEYPDSGENIVDALAAFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDA
                     SDFDDERNGWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGI
                     ADRYQDLAILWNCLGEFSPSLQKRLFQKYGIDNPDMNKLQFHLMLDEFF"
                     /name="aminoglycoside O-phosphotransferase APH(3')-Ia"
     ARG             2271..3082
                     /name="aph(3')-Ia"
                     /gene="aph(3')-Ia"
                     /gene_name="aminoglycoside O-phosphotransferase APH(3')-Ia"
                     /tool="amrfinderplus"
                     /drug_class="AMINOGLYCOSIDE"
                     /identity="100.0"
                     /coverage="100.0"
     Typing          1213..1452
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="7.6e-123"
     Typing          complement(424..948)
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="95.274"
                     /coverage="95.0"
                     /evalue="0.0"
     Typing          1462..1781
                     /name="MOBF"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.065"
                     /coverage="100.0"
                     /evalue="2.32e-62"
ORIGIN
        1 aggcgagcga cagatctctg ctctctgtca tcgagaagta tggagatcaa gaatgatgct
       61 ttgagagcct gctgtatgcg tgatgagttc tacaaagatg gagtacttgt agccagaagg
      121 cctcaggaat ggcgagctgt tgccaatacc aggcaaagaa gggctagaag tcgttaggct
      181 ttgttgacgc agctagcgca aggagattaa tctaactagg ttgaaaacga aaaaaccgcc
      241 ttggcgggcg gtttttcgaa ggttcataga gttggcgctc tttgaaccga ggtaactggc
      301 tttgaggagc acagtcgcca aaacttgttc tttcagttta gccttatcag gtgcataact
      361 tcaagactca actcctctaa atcagttacc aatggctgct gccagtggcg ttaagtcgtg
      421 tctttccggg ttggactcaa gacgatagtt accggataag gcgcagcggt cgggctgaac
      481 ggggggttcg tgcacacagc ccagcttgga gcgaacgacc tacaccgaac tgagatacca
      541 acagcgtgag ctatgagaaa gcgccacgct tcccgaaggg agaaaggcgg acaggtatcc
      601 ggtaagcggc agggtcggaa caggagagcg cacgagggag cttccagggg gaaacgcctg
      661 gtatctttat agtcctgtcg ggtttcgcca cctctgactt gagcgtcgat ttttgtgatg
      721 ctcgtcaggg gggcggagcc tatggaaaaa cggcatcggc gctggcttgt tccggtgctt
      781 tgctttttgc tcacatgttc tttccggcgt tatcccctga ttctgtggat aaccgtatta
      841 ccgcctttga gtgagctgac accgctcgcc gcagtcgaac gaccgagcgt agcgagtcag
      901 tgagcgagga agcggaagag cgtctgacgt ggcattttct ccttacgctc cgctatgccg
      961 ttctgcatcc tgtccgggtg cgttatatcc cggtgcgatt ttccgcttca aagcgtgtct
     1021 gtatgctgtt ctgaagttct tccgcgagtt cgtgcagctt ctcacacatg gcggcctgtt
     1081 cgtcagcatc aagtgcgtcc agtttttcga gcagcgtcag gctctggctt tttatgaatc
     1141 ccgccatgtt gagtacggtt tgctgctgct tgttcatctt tctgttttct ccgttctttc
     1201 tgtcatctgc gttgtgtgat tatatcgagt accacttttc gactgtttta ccgccggtat
     1261 tctgctgtct gactctttga cgggcatttc tgtcagacaa cactgtcact gccaaaaaac
     1321 tgccgtgctt ttgtcggtaa ttcgagcttg ctgacaggac aggatgtgca attgttatac
     1381 cgcgcataca tgcacgctat tacaattacc ctggtcaggg ctttgccccg acacccatgt
     1441 cagatacgga gccatgtttt atgacaaaac gaagtggaag taatacgcgc aggcgggcta
     1501 tcagtcgccc tgttcgtctg acggcagaag aagaccagga aatcagaaaa agggctgctg
     1561 aatgcggcaa gaccgtttct ggttttttac gggcggcagc tctcggtaag aaagttaatt
     1621 cactgactga tgaccgagtg ctgaaagaag tcatgcgact gggggcgttg cagaaaaaac
     1681 tctttatcga cggcaagcgt gtcggggaca gagagtatgc ggaggtgctg atagctatta
     1741 cggagtatca ccgggccctg ttatccaggc ttatggcaga ttagcttccc ggagggaaac
     1801 tgtcgaaaac agacggtatg aacgccgtaa gtccccaaac cgatcgccat tcactttcat
     1861 gcatagctat gcagtgagct gaaagcaatc ctgacgcatt tttccggttt accccgggga
     1921 aaacatctct ttttgcggtg tttgcggcag aatcgcgttc agcgcgtttt agcggtgcgc
     1981 gtaatgagac gttatggtaa atgggagcgt tagaaacagt cccatttact tgatgccatg
     2041 ttcctcgact acgaagcggc caaagattat gcgacccgct ccaggctggt cacggcggcg
     2101 aatatccctt ctttcggagc gccagaatga tgttggtctg gccggatttt catatggcgg
     2161 gaaccacgtt gtgtctcaaa atctctgatg ttacattgca caagataaaa atatatcatc
     2221 atgaacaata aaactgtctg cttacataaa cagtaataca aggggtgtta tgagccatat
     2281 tcaacgggaa acgtcttgct cgaggcagcg attaaattcc aacctggatg ctgatttata
     2341 tgggtataaa tgggctcgcg ataatgtcgg gcaatcaggt gcgacaatct atcgattgta
     2401 tgggaagccc gatgcgccag agttgtttct gaaacatggc aaaggtagcg ttgccaatga
     2461 tgttacagat gagatggtca gactaaactg gctgacggaa tttatgcctc ttccgaccat
     2521 caagcatttt atccgtactc ctgatgatgc atggttactc accactgcga tccccgggaa
     2581 aacagcattc caggtattag aagaatatcc tgattcaggt gaaaatattg ttgatgcgct
     2641 ggcagcgttc ctgcgccggt tgcattcgat tcctgtttgt aattgtcctt ttaacagcga
     2701 tcgcgtattt cgtctcgctc aggcgcaatc acgaatgaat aacggtttgg ttgatgcgag
     2761 tgattttgat gatgagcgta atggctggcc tgttgaacaa gtctggaaag aaatgcataa
     2821 gcttttgcca ttctcaccgg attcagtcgt cactcatggt gatttctcac ttgataatct
     2881 tatttttgac gaggggaaat taataggttg tattgatgtt ggacgagtcg gaatcgcaga
     2941 ccgataccag gatcttgcca ttctatggaa ctgcctcggt gaattttctc cttcattaca
     3001 gaaacggctt tttcaaaaat atggtattga taatcctgat atgaataaat tgcagtttca
     3061 tttgatgctc gatgagtttt tctgatagtt agtctttaat gaatgcggtt ggcgcatcgg
     3121 cgggcacctt gcgcgcgctg tcgctgttca tgccgcgcag catgtcgatg gcatcgagca
     3181 cacccttgta gctcctccgg ggagaatc
//
