LOCUS       NC_002809               5210 bp    DNA     circular CON 03-JAN-2024
DEFINITION  Shigella sonnei plasmid ColJs, complete sequence.
ACCESSION   NC_002809
VERSION     NC_002809.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14224737
KEYWORDS    RefSeq.
SOURCE      Shigella sonnei
  ORGANISM  Shigella sonnei
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5210)
  AUTHORS   Smajs,D. and Weinstock,G.M.
  TITLE     Genetic organization of plasmid ColJs, encoding colicin Js activity,
            immunity, and release genes
  JOURNAL   J Bacteriol 183 (13), 3949-3957 (2001)
   PUBMED   11395458
REFERENCE   2  (bases 1 to 5210)
  AUTHORS   Smajs,D. and Weinstock,G.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-JUN-2000) Microbiology and Molecular Genetics,
            University of Texas Medical School, 6431 Fannin, Houston, TX 77030,
            USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Date              :: 01/03/2024 06:15:53
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.6
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 9
            CDSs (total)                 :: 9
            Genes (coding)               :: 9
            CDSs (with protein)          :: 9
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            AF282884.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5210
                     /organism="Shigella sonnei"
                     /mol_type="genomic DNA"
                     /strain="colicin type 7"
                     /db_xref="taxon:624"
                     /plasmid="ColJs"
     gene            558..1076
                     /locus_tag="HKJ92_RS00010"
     CDS             558..1076
                     /locus_tag="HKJ92_RS00010"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_023144181.1"
                     /translation="MSNLLQTGAEFEKKLKERAESTETILNDEFRKLEKSVSKAVTSNE
                     TKIKDAIALFTASTEESLKKHREGVKEAMMQHRKDVLKLAGNTGMMLLGMVIFLFTVSC
                     GTLWYLGGMIQANLEDIRKQEETLQKLNAKTWGVEFVQDGNRKFLVLPYGKSAEVIPHQ
                     GKDWVQLME"
                     /name="MbeB family mobilization protein"
     gene            1083..1316
                     /locus_tag="HKJ92_RS00015"
     CDS             1083..1316
                     /locus_tag="HKJ92_RS00015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_001555310.1"
                     /translation="MTELERHLLNALEQLQQDYMQRLNEWESAFVELQKMFSLTQRDNA
                     MLNERVMKLSQQVQHLSERTERLSQLYSENRR"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(1863..2159)
                     /locus_tag="HKJ92_RS00020"
     CDS             complement(1863..2159)
                     /locus_tag="HKJ92_RS00020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001679964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000047647.1"
                     /translation="MSKTKSGRHRLSKTDKRLLAALIAAGYEERTARDLIQKHVYTLTQ
                     ADLRHLVSEISNGVGQSQAYDAIYQARRIRLARKFLNGKKPEEGLNAWKGDLP"
                     /name="hypothetical protein"
     gene            2371..2568
                     /locus_tag="HKJ92_RS00025"
                     /old_locus_tag="ColJs_p1"
     CDS             2371..2568
                     /locus_tag="HKJ92_RS00025"
                     /old_locus_tag="ColJs_p1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001335786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001335786.1"
                     /translation="MKEEKVLLHRFLFVVRNKNGCELSCSADLMGTRDDVYKYFSDSVS
                     GLDVELIDVSCESEWEEHSH"
                     /name="hypothetical protein"
     gene            2586..2870
                     /locus_tag="HKJ92_RS00030"
                     /old_locus_tag="ColJs_p2"
     CDS             2586..2870
                     /locus_tag="HKJ92_RS00030"
                     /old_locus_tag="ColJs_p2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000625497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin Z C-terminal domain-related protein"
                     /protein_id="WP_000625497.1"
                     /translation="MISQNVWAPPFFFGPWVELENHTGDIAYTVYFDTLSNVPGPFIAF
                     IWYAPNGPRTVNVIGPASYQISCKGAGVDKIKFKSVSGTGQIIHVYTTL"
                     /name="colicin Z C-terminal domain-related protein"
     gene            complement(2934..3323)
                     /locus_tag="HKJ92_RS00035"
                     /old_locus_tag="ColJs_p3"
     CDS             complement(2934..3323)
                     /locus_tag="HKJ92_RS00035"
                     /old_locus_tag="ColJs_p3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001679965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000477210.1"
                     /translation="MFKSSVKSITSSTILTLLIGCSSTETNKNIVYKVGGDSIILNKYC
                     ILKMYPSQSEKNKGVIIEVNTDSLCKKKLNEITSKNIGKPLISYFDGKVISQPAIIHSA
                     LNPTHYYQPVNDETTVMEIIKAYSK"
                     /name="hypothetical protein"
     gene            complement(3730..3843)
                     /locus_tag="HKJ92_RS00050"
     CDS             complement(3730..3843)
                     /locus_tag="HKJ92_RS00050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001422066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001427889.1"
                     /translation="MHEPPVQPDRCALSGNYRLESNPVRHDLTPLAAAIGN"
                     /name="hypothetical protein"
     gene            complement(4511..4702)
                     /locus_tag="HKJ92_RS00040"
     CDS             complement(4511..4702)
                     /locus_tag="HKJ92_RS00040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_000165988.1"
                     /translation="MTKQEKTALNMARFIRSQTLTLLEKLNELDADEQADICESLHDHA
                     DELYRSCLARFGDDSENL"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            4752..5090
                     /locus_tag="HKJ92_RS00045"
     CDS             4752..5090
                     /locus_tag="HKJ92_RS00045"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_173020952.1"
                     /translation="MKRERMLTIRVTDDEHARLLERCEGKQLAVWMRRVCLGEPVARSG
                     RLPTLAPPLLRQLAAIGNNLNQTARKVNSGQWSSGDRVQVVAALMAIGDELRRLRLAVR
                     EQGTRDDS"
                     /name="MobC family plasmid mobilization relaxosome protein"
     Typing          4339..4426
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="6.86e-39"
     Typing          complement(3772..4328)
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          3..1420
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="90.776"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          4735..5087
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.153"
                     /coverage="100.0"
                     /evalue="3.71e-70"
ORIGIN
        1 cgatgccacg ccatttgcga agaaatacac gtccggtgtg ctgtcgttcg cggagaagga
       61 gctgccaccg ggaggacgtg aaaaggtgat ggcgagcttt gagcgtgtac tgatgcccgg
      121 tctcgaaaaa aatcagtaca gcatcctgtg ggtggagcac caggacaagg gacggcttga
      181 gctgaatttt gtcattccga acatggagct acagaccgga aaacgcctcc agccgtacta
      241 cgaccgggca gacaggccga gaattgatgc ctggcagacg ctggtgaatc accattacgg
      301 gctgcatgac cccaacgccc cggagaaccg ccggatactg actctctctg ataacctgcc
      361 ggaaacgaaa caggcgcttg cagagagcgt cacacgcggg atagacgctc tttatcatgt
      421 cggggagata aaaggccgtc aggatgtgat tcaggcgctc acagaggcag ggcttgaagt
      481 ggtcagggtg acgcgaagca gtatcagcat tgcagacccg aacggtggga agaatatcag
      541 gctgaaagga gcattttatg agcaatcttt tacagacggg cgcggagttc gagaaaaagc
      601 tgaaagagag agccgaatct acagagacaa tactgaacga cgagttcagg aagctcgaaa
      661 aatctgtaag caaggctgtg acatcaaacg agacgaaaat caaagacgct atagccctgt
      721 tcacagcttc gacagaggaa tcactgaaaa agcaccggga aggggtgaaa gaggcgatga
      781 tgcagcacag gaaggacgtg ttaaagctgg cagggaatac gggcatgatg ttactgggga
      841 tggtcatttt cctgtttacc gtgagttgcg ggacgctctg gtatcttggc gggatgatac
      901 aggcgaacct ggaagatatc aggaagcagg aagagacatt gcagaaactg aacgcgaaga
      961 catggggcgt ggagttcgta caggacggga acaggaaatt tctggtcctt ccgtacggga
     1021 aatcagcaga ggtgattccc catcagggga aggactgggt acaactgatg gagtgacaca
     1081 gagtgacgga gctggaaaga catttgctga acgcattaga gcaactgcaa caggactata
     1141 tgcagcggct gaacgaatgg gagagcgcct tcgtggaatt gcagaaaatg ttttcgctta
     1201 cgcaacggga caacgcgatg ctgaacgagc gggtcatgaa gttgagtcag caggtgcagc
     1261 acttgagcga gcggacagaa cgcttgagcc agttatacag cgagaacagg agataaggga
     1321 cgaacggctg atacaggaac gcgaacatga gttatccctg gagcgtgagc gccagctgga
     1381 aatacaggaa cggacactgg atggcccttc gctgggatgg taatcagaga caggctaaaa
     1441 tgttgtcagc gcgtttccgg tgcatttttt gggataatgg ttggttcggg gcaccgggaa
     1501 cgcgcttcag tcataaacct tgctgaaaac acaggaacgc gttaaaacgc atacgggcgc
     1561 gattctggtg tgtctttcat agtcgtgttt ttgcctctat tgccagatcg cgctcattcc
     1621 cctgaacttc tgttttcctg ctcaaatccc cgtcttcttc gcttccgaaa gtatgaaaaa
     1681 aatccgtttc agcggtctct gactggcaat tcctgcgtga ttcacctggc tgcataggta
     1741 tgcatgtggt taaaatttac cgggtgcgat cgcggcagtt ttccgggtgg tttgttgcca
     1801 tttttacctg tctgctgccg tgatcgcacc gaacgcgttt cggcggtgcg tacaataagt
     1861 gattatggta aatcaccctt ccaggcgttc agcccttctt ccggtttttt tccgttcagg
     1921 aatttacggg cgagacgaat gcgtcttgcc tggtaaatcg catcgtaggc ctgtgactgt
     1981 cccacaccgt tactgatttc actgaccaga tggcgcaggt cggcctgtgt cagtgtgtaa
     2041 acgtgtttct ggatgaggtc acgggctgtc cgctcttcgt atccggcagc gataagtgca
     2101 gccagcaggc gtttgtctgt tttgctcagt cggtggcgac cagattttgt tttgctcacg
     2161 ttatctcctc tctgtttttt ctcctgatgt tatccggtgc tgtttttctg ctgcgaatct
     2221 tcccttcctg atttttataa gggtgattca gatcacaaaa atgaaaattc atatcattga
     2281 caggaaaaat aatgcggcgt aatttatact gtatataaaa ctagtattta tatatacagt
     2341 atattctgtg taaataaagg gagggataaa atgaaagaag aaaaagtatt gcttcaccgt
     2401 ttcttatttg tagttaggaa taagaatggt tgtgaactat catgttcggc agaccttatg
     2461 ggaacaaggg atgatgttta taagtatttc tctgattctg ttagtgggct agatgttgag
     2521 cttatagatg tttcttgcga gagtgaatgg gaagaacatt cgcattgaac taatcaggag
     2581 attatatgat ttctcaaaat gtttgggctc ctcctttctt ttttggtcct tgggttgaac
     2641 ttgaaaatca tactggtgat atcgcgtaca ctgtctattt tgatacattg tctaatgtac
     2701 ccggtccatt tattgctttt atctggtatg cccctaatgg gccaagaaca gttaacgtta
     2761 ttggtccagc atcttatcag atctcttgca agggcgctgg tgttgataaa attaaattta
     2821 aaagtgtcag tgggacaggg cagattattc atgtatacac taccttataa taagagctga
     2881 ataaatataa tcctgcctaa gctatacctt aagcaggatt atatctatta atattatttt
     2941 gaatatgctt ttatgatttc catcactgtt gtttcatcgt tcacaggttg ataataatgg
     3001 gttggattta gtgcagaatg aatgattgca ggttgggata ttacttttcc atcaaaatat
     3061 gaaatcaggg gtttccctat atttttacta gttatttcgt ttagtttttt cttacataaa
     3121 ctatctgtgt ttacttctat tatgacgcct ttgttttttt ctgattggga agggtacatt
     3181 ttaagtatgc aatatttatt cagaatgatg ctgtcaccac caactttgta aacaatgttt
     3241 ttgtttgttt cagtacttga acatcctata agtaaggtca gtatagtact cgatgttatt
     3301 gactttactg atgatttgaa catattaact ccattttatt ttgttaaaat tccaatctat
     3361 aaatacatat acacgtaaaa ataaacaatg cgaacgtttt cacttatatt atccccatga
     3421 tgtgattgaa tggtggttcc atataagaga gggcaattat actatctttc tctcctgaac
     3481 tgatgggatt gcagtttaga gaaaaaaaga tcaaaggatc ttcttgagat cctttttttc
     3541 tgcgcgtaat ctgctgcctg taaacgaaaa aaccaccctg gcaggtggtt tttcgaaggt
     3601 tagctaatcc tggcagatta cctaaccggg tagctggctt aagtggagca cagataccaa
     3661 aagatgtcct ttcagtgtag ccgctataag gcttcaactt caagagttct gcgtatctaa
     3721 atccactttt tagttaccaa tggctgctgc cagtggcgtt aagtcgtgtc ttaccgggtt
     3781 ggactcaaga cgatagttac cggataaggc gcagcggtcg ggctgaacgg ggggttcgtg
     3841 cacacagccc agcttggagc gaacgaccta caccgaactg agatacctac agcgtgagct
     3901 atgagaaagc gccacgcttc ccgaagggag aaaggcggac aggtatccgg taaacggtaa
     3961 ggtcggaaca ggagagcgca cgagggagct tccgggggga aacgcctggt atctttaagt
     4021 cctgtcgggt ttcgccacct ctgacttgag cgtcgatttt tgtgatgctc gtcagggggg
     4081 cggagcctat ggaaaaacgc cagcggcgcg gccttcttcc tgttcctggt cttttgctca
     4141 catgtttttt ccggtgttat cccctgattc tgtggataac agcatttcgt ttttgagtga
     4201 gtagataccg ctcgccgcag ccgaacgacc gagcgtagcg agtcagtgag cgaggaagcg
     4261 gaaaagcgcc tggacgtgca ttttctcctt acgcatctgt gcggcatttc acacccggta
     4321 tggcgcacgt ttcatacaat ccgcactgat gccgcatggt taagccagta tacactccgc
     4381 tatcgctacg tgactggttc agggctgcgc cccgaaaccc gctaaaacac cctgacgcgc
     4441 cctggcgggc ttgtctgctc ccggcatccg ctcacaggca agctgtgacc gtctccggga
     4501 gctgcatatg tcagaggttt tcactgtcat ccccgaagcg cgcgaggcag ctgcggtaaa
     4561 gctcatcggc gtggtcgtga agcgattcac agatatctgc ctgttcatcc gcgtccagtt
     4621 cgttgagctt ctccagcagc gttaatgtct ggcttctgat aaagcgggcc atgttaaggg
     4681 cggttttttc ctgtttagtc actgatgcct ccgtgtaagg gggatttctg ttcatggggg
     4741 taatgatacc gatgaaacgc gagaggatgc tcacgatacg ggttactgat gatgaacatg
     4801 cccggttact ggaacgctgt gagggtaaac aactggcggt atggatgcgg cgggtctgcc
     4861 tgggtgagcc ggttgcccgt tccgggaggc tgccgacact ggcaccgccg ttactgcgtc
     4921 agctggcagc catcgggaat aacctgaacc agacagcccg taaggtgaac agcggacagt
     4981 ggtcttccgg cgaccgggtt caggtggtgg ccgcactgat ggccatcggg gatgagctgc
     5041 gccggttgcg tctggccgtc agggaacagg ggacgcggga tgatagttaa gtttcatgcc
     5101 cggggaaaag gtggtggcag tggtccggtt gattacctgc tgggaaggga gcgtaaccgg
     5161 gaaggggcaa cggtgcttca gggtaatccg gaagaagtac gggaactcat
//
