LOCUS       LC784005                4439 bp    DNA     circular BCT 20-MAR-2024
DEFINITION  Staphylococcus aureus C007F06B-n plasmid pTDC07B DNA, complete
            genome.
ACCESSION   LC784005
VERSION     LC784005.1
DBLINK      BioProject: PRJDB10537
            BioSample: SAMD00249048
            Sequence Read Archive: DRR250814
KEYWORDS    .
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1
  AUTHORS   Katahira,K., Gotoh,Y. and Hayashi,T.
  TITLE     Draft genome sequence of commensal S. aureus strains
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4439)
  AUTHORS   Katahira,K., Gotoh,Y., Hayashi,T. and Katsura,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-OCT-2023) Contact:Katsuyuki Katahira NHO Omuta
            Hospital, Department of Respiratory Medicine; 1044-1 Oaza,
            Tachibana, Omuta, Fukuoka 837-0911, Japan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method       :: platanus v. 1.2.4
            Genome Coverage       :: 89x
            Sequencing Technology :: Illumina Miseq
            ##Genome-Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..4439
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="C007F06B-n"
                     /isolation_source="outpatient"
                     /host="Homo sapiens"
                     /db_xref="taxon:1280"
                     /plasmid="pTDC07B"
                     /geo_loc_name="Japan:Miyazaki"
                     /collection_date="2002"
     CDS             1..945
                     /inference="COORDINATES: ab initio
                     prediction:MetaGeneAnnotator"
                     /inference="similar to AA sequence:RefSeq:WP_000277654.1"
                     /note="SAC007F06Bn_p10"
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="BET78971.1"
                     /translation="MYKNNHANHSNHLENHDLDNFSKTGYSNSRLDAHTVCISDPKLSF
                     DAMTIVGNLNRDNAQALSKFMSVEPQIRLWDILQTKFKAKALQEKVYIEYDKVKADSWD
                     RRNMRIEFNPNKLTRDEMIWLKQNIISYMEDDGFTRLDLAFDFEDDLSDYYAMSDKAVK
                     KTIFYGRNGKPETKYFGVRDSNRFIRIYNKKQERKDNADAEVMSEHLWRVEIELKRDMV
                     DYWNDCFSDLHILQPDWKTIQRTADRAIVFMLLSDEEEWGKLHRNSRTKYKNLIKEISP
                     VDLTDLMKSTLKANEKQLQKQIDFWQHEFKFWK"
                     /name="replication initiation protein"
     gene            1107..2486
                     /gene="tet"
     CDS             1107..2486
                     /gene="tet"
                     /inference="COORDINATES: ab initio
                     prediction:MetaGeneAnnotator"
                     /inference="similar to AA sequence:UniProtKB:P62967"
                     /note="SAC007F06Bn_p20"
                     /codon_start=1
                     /transl_table=11
                     /product="tetracycline resistance protein"
                     /protein_id="BET78972.1"
                     /translation="MFSLYKKFKGLFYSVLFWLCILSFFSVLNEMVLNVSLPDIANHFN
                     TTPGITNWVNTAYMLTFSIGTAVYGKLSDYINIKKLLIIGISLSCLGSLIAFIGHNHFF
                     ILIFGRLVQGVGSAAFPSLIMVVVARNITRKKQGKAFGFIGSIVALGEGLGPSIGGIIA
                     HYIHWSYLLILPMITIVTIPFLIKVMVPGKSTKNTLDIVGIVLMSISIICFMLFTTNYN
                     WTFLILFTIFFVIFIKHISRVSNPFINPKLGKNIPFMLGLFSGGLIFSIVAGFISMVPY
                     MMKTIYHVNVATIGNSVIFPGTMSVIVFGYFGGFLVDRKGSLFVFILGSLSISISFLTI
                     AFFVEFSMWLTTFMFIFVMGGLSFTKTVISKIVSSSLSEEEVASGMSLLNFTSFLSEGT
                     GIAIVGGLLSLQLINRKLVLEFINYSSGVYSNILVAMAILIILCCLLTIIVFKRSEKQF
                     E"
                     /name="tet"
     CDS             2672..3913
                     /inference="COORDINATES: ab initio
                     prediction:MetaGeneAnnotator"
                     /inference="similar to AA sequence:UniProtKB:Q8CUG0"
                     /note="SAC007F06Bn_p30"
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid recombination enzyme type 3"
                     /protein_id="BET78973.1"
                     /translation="MSYSIVRVSKVKSGTNTTGIQKHVQRENNNYENEDIDHSKTYLNY
                     DLVNANKQNFNNLIDEKIEQNYTGKRKIRTDAIKHIDGLITSDNDFFDNQTPEDTKQFF
                     EYAKEFLEQEYGKDNLLYATVHMDEKTPHMHYGVVPITDDGRLSAKEVVGNKKALTAFQ
                     DRFNEHVKQRGYDLERGQSRQVTNAKHEQISQYKQKTEYHKQEYERESQKTDHIKQKND
                     KLMQEYQKSLNTLKKPINVPYEQETEKVGGLFSKEIQETGNVVISQKDFNEFQKQIKAA
                     QDISEDYEYIKSGRALDDKDKEIREKDDLLNKAVERIENADDNFNQLYENAKPLKENIE
                     IALKLLKILLKELERVLGRNTFAERVNKLTEDEPKLNGLAGNLDKKMNPELYSEQEQQQ
                     EQQKNQKRDRGMHL"
                     /name="plasmid recombination enzyme type 3"
     ARG             1108..2483
                     /name="tet(K)"
                     /gene="tet(K)"
                     /gene_name="tetracycline efflux MFS transporter Tet(K)"
                     /tool="amrfinderplus"
                     /drug_class="TETRACYCLINE"
                     /identity="100.0"
                     /coverage="100.0"
     Typing          2..945
                     /name="rep_cluster_1118"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          2673..3910
                     /name="MOBV"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 atgtataaaa acaatcatgc aaatcattca aatcatttgg aaaatcacga tttagacaat
       61 ttttctaaaa ccggctactc taatagccgg ttggacgcac atactgtgtg catatctgat
      121 ccaaaattaa gttttgatgc aatgacgatc gttggaaatc tcaaccgaga caacgctcaa
      181 gccctttcta aatttatgag tgtagagccc caaataagac tttgggatat tcttcaaaca
      241 aagtttaaag ctaaagcact tcaagaaaaa gtttatattg aatatgacaa agtgaaagca
      301 gatagttggg atagacgtaa tatgcgtatt gaatttaatc caaacaaact tacacgagat
      361 gaaatgattt ggttaaaaca aaatataata agctacatgg aagatgacgg ttttacaaga
      421 ttagatttag cctttgattt tgaagatgat ttgagtgact actatgcaat gtctgataaa
      481 gcagttaaga aaactatttt ttatggtcgt aatggtaagc cagaaacaaa atattttggc
      541 gtgagagata gtaatagatt tattagaatt tataataaaa agcaagaacg taaagataat
      601 gcagatgctg aagttatgtc tgaacattta tggcgtgtag aaatcgaact taaaagagat
      661 atggtggatt actggaatga ttgctttagt gatttacata tcttgcaacc agattggaaa
      721 actatccaac gcactgcgga tagagcaata gtttttatgt tattgagtga tgaagaagaa
      781 tggggaaagc ttcacagaaa ttctagaaca aaatataaga atttgataaa agaaatttcg
      841 ccagtcgatt taacggactt aatgaaatcg actttaaaag cgaacgaaaa acaattgcaa
      901 aaacaaatcg atttttggca acatgaattt aaattttgga aatagtgtac atattaatat
      961 tactgaacaa aaatgatata tttaaactat tctaatttag gaggattttt ttatgaagtg
     1021 tctatttaaa aatttgggga atttatatga ggtgaaagaa taatttaccc ctataaactt
     1081 tagtcacctc aagtaaagag gtaaaattgt ttagtttata taaaaaattt aaaggtttgt
     1141 tttatagcgt tttattttgg ctttgtattc tttcattttt tagtgtatta aatgaaatgg
     1201 ttttaaatgt ttctttacct gatattgcaa atcattttaa tactactcct ggaattacaa
     1261 actgggtaaa cactgcatat atgttaactt tttcgatagg aacagcagta tatggaaaat
     1321 tatctgatta tataaatata aaaaaattgt taattattgg tattagtttg agctgtcttg
     1381 gttcattgat tgcttttatt ggtcacaatc acttttttat tttgattttt ggtaggttag
     1441 tacaaggagt aggatctgct gcattccctt cactgattat ggtggttgta gctagaaata
     1501 ttacaagaaa aaaacaaggc aaagcctttg gttttatagg atcaattgta gctttaggtg
     1561 aagggttagg tccttcaata gggggaataa tagcacatta tattcattgg tcttacctac
     1621 ttatacttcc tatgattaca atagtaacta taccttttct tattaaagta atggtacctg
     1681 gtaaatcaac aaaaaataca ttagatatcg taggtattgt tttaatgtct ataagtatta
     1741 tatgttttat gttatttacg acaaattata attggacttt tttaatactc ttcacaatct
     1801 tttttgtgat ttttattaaa catatttcaa gagtttctaa cccttttatt aatcctaaac
     1861 tagggaaaaa cattccgttt atgcttggtt tgttttctgg tgggctaata ttttctatag
     1921 tagctggttt tatatcaatg gtgccttata tgatgaaaac tatttatcat gtaaatgtag
     1981 cgacaatagg taatagtgtt atttttcctg gaaccatgag tgttattgtt tttggttatt
     2041 ttggtggttt tttagtggat agaaaaggat cattatttgt ttttatttta ggatcattgt
     2101 ctatctctat aagtttttta actattgcat tttttgttga gtttagtatg tggttgacta
     2161 cttttatgtt tatatttgtt atgggcggat tatcttttac taaaacagtt atatcaaaaa
     2221 tagtatcaag tagtctttct gaagaagaag ttgcttctgg aatgagtttg ctaaatttca
     2281 caagtttttt atcagaggga acaggtatag caattgtagg aggtttattg tcactacaat
     2341 tgattaatcg taaactagtt ctggaattta taaattattc ttctggagtg tatagtaata
     2401 ttcttgtagc catggctatc cttattattt tatgttgtct tttgacgatt attgtattta
     2461 aacgttctga aaagcagttt gaatagttat attatatttt ggtttagaac tatgagtggc
     2521 tagcattttg ccactcattt tttgcgttag caaaaacagg tttaagcctc gcagagcaca
     2581 cgtattaacg acttattaaa aataagtcta gtgtgttaga cttaaactat taaatacaca
     2641 tgaaaccttt gtgcttagga gtgattttta tatgtcttat tccattgtta gagtttcaaa
     2701 agttaaatct ggaacaaata caacgggcat acaaaaacat gttcaaagag aaaataataa
     2761 ttatgaaaat gaagatatag accatagtaa aacttactta aattatgatt tggtaaatgc
     2821 taataaacag aattttaata acttgattga tgaaaaaatc gaacagaatt atacaggcaa
     2881 aagaaaaatt agaacagacg cgattaaaca cattgatggt ttaattacat cagacaatga
     2941 tttctttgat aatcaaacgc cagaagatac aaagcagttt tttgaatatg ctaaagagtt
     3001 tttagaacaa gaatacggta aagataattt attatatgca acagttcaca tggacgaaaa
     3061 aacaccacat atgcattatg gcgttgttcc aataactgat gatggtcgtt taagtgctaa
     3121 agaagttgta ggtaataaaa aagctttaac agcgtttcaa gatagattta atgagcatgt
     3181 taaacaacga ggatatgatt tagaacgtgg gcaatcaaga caagtaacaa atgctaaaca
     3241 tgagcaaata agtcagtata aacaaaaaac agaatatcat aagcaagaat atgaacgtga
     3301 gagccaaaaa acagaccata taaagcaaaa gaacgataaa ttaatgcaag agtaccaaaa
     3361 atcgttaaat acgcttaaaa agcctataaa tgttccgtat gagcaagaaa ctgaaaaagt
     3421 aggtggttta tttagcaaag aaatacaaga aactggaaat gttgtaataa gccaaaaaga
     3481 tttcaatgaa tttcagaaac agataaaagc tgctcaagat atttcggaag attacgagta
     3541 tataaagtct ggtagagcct tagatgataa agataaggaa atacgagaga aagatgattt
     3601 attaaataaa gcagttgagc gtattgaaaa cgcagacgat aattttaacc aactttacga
     3661 aaatgcaaag ccacttaaag agaatataga aatagcgtta aagcttttaa aaatcttact
     3721 aaaagagtta gaacgagttt taggaagaaa tacctttgcg gaaagagtta ataagttaac
     3781 agaagatgaa ccaaaactaa atggtttagc aggaaactta gataaaaaaa tgaatccaga
     3841 attatattca gaacaggaac agcaacaaga acaacaaaag aatcaaaaac gagatagagg
     3901 tatgcactta tagaacatgc atttatgccg agaaaactta ttggttggaa tgggctatgt
     3961 gttagctaac ttgttagcga gttggttgga cttgaattgg gattaatccc aagaaagtac
     4021 caactcaaca acacataaag ccctgtaggt tccgaccaat aaggaaattg gaataaagca
     4081 ataaaaggag ttgaagaaat gaaattcaga gaagcctttg agaattttat aacaagtaag
     4141 tatgtacttg gtgttttagt agttttaact gtttaccaga taatacaaat gcttaaataa
     4201 aaaaagactt gatctgatta gaccaagtct tttgatagtg ttatattaat aacaaaataa
     4261 aaaggagtcg ctcacgccct gaccaaagtt tgtgaacgac atcattcaaa gaaaaaaaca
     4321 ctgagttatt tttataatct tgtatattta gatattaaac gatatttaaa tatacatcaa
     4381 gatatatatt tgggtgagcg attccttaaa cgaaattgag attaaggagt cgatttttt
//
