LOCUS       HQ540672                2682 bp    DNA     circular ENV 12-SEP-2011
DEFINITION  UNVERIFIED: Uncultured bacterium plasmid pHIRE-U1, complete
            sequence.
ACCESSION   HQ540672
VERSION     HQ540672.1
KEYWORDS    ENV; UNVERIFIED.
SOURCE      uncultured bacterium
  ORGANISM  uncultured bacterium
            Bacteria; environmental samples.
REFERENCE   1  (bases 1 to 2682)
  AUTHORS   Kristiansson,E., Fick,J., Janzon,A., Gabric,R., Rutgersson,C.,
            Weijdegard,B., Soderstrom,H. and Larsson,D.G.J.
  TITLE     Deep sequencing of antibiotic-contaminated river sediments reveals
            high levels of resistance and gene transfer elements
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2682)
  AUTHORS   Kristians,E., Janzon,A., Rutgersson,C. and Larsson,D.G.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-SEP-2010) Department of Department of Neuroscience and
            Physiology, University of Gothenburg, Box 100, Sweden, Sweden 405
            30, Sweden
COMMENT     GenBank staff is unable to verify sequence and/or annotation
            provided by the submitter.
FEATURES             Location/Qualifiers
     source          1..2682
                     /organism="uncultured bacterium"
                     /mol_type="genomic DNA"
                     /isolation_source="antibiotic-contaminated river sediments"
                     /db_xref="taxon:77133"
                     /environmental_sample=""
                     /plasmid="pHIRE-U1"
     ARG             2166..2680
                     /name="QnrD1"
                     /gene="QnrD1"
                     /gene_name="quinolone resistance protein (qnr)"
                     /tool="rgi"
                     /drug_class="fluoroquinolone antibiotic"
                     /identity="100.0"
                     /coverage="80.37"
     ARG             3..127
                     /name="QnrD1"
                     /gene="QnrD1"
                     /gene_name="quinolone resistance protein (qnr)"
                     /tool="rgi"
                     /drug_class="fluoroquinolone antibiotic"
                     /identity="100.0"
                     /coverage="19.16"
     Typing          1916..2071
                     /name="Col3M"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="97.452"
                     /coverage="100.0"
                     /evalue="1.07e-69"
ORIGIN
        1 ttgtgattta acgggtgggg cgcttggcga gcttgatgca aggcgaatta atttagatgg
       61 agtgaagttg gatggagagc aggcgcttca gcttgttgag agtttaggtg ttattgttca
      121 ccgataaaat ctaggtaaaa aacgcctaat gccccaatgt ggtactaatc aaaacggagc
      181 gaagcgacat cttcatcttg tctttgcttt tctccatgat cagttattgg gtcatggtct
      241 cttagctcgt taatctggct aagtttggtt aggttgggct tctttcgaca cttcgcaatc
      301 caagaaatcc ctagtccgtt gattggtgct cttatcaggt acgcactgta atctttcgat
      361 accgcagcgt gattcggagg tagagccgga atttcgtttt ccggtacgtt ttactaccac
      421 aatttgcctg tttatccttt cggagaccgg gctaagtccg agtcaatcaa gtggtgcatt
      481 tgggttaatg tcgttggctg gtatttaatg agaacgtgac aagcgcctct cacgttgcta
      541 agattggatt gcgacgtcta atctgagcaa cgaatgcaca agatttagag taccagagcc
      601 ctgtgatgct gtcacggggc tttgttacat ctggagcttg gtaaacctca taaattcaat
      661 tcgcaacgct cgccgcaagg cgtgaacttg tttcacgtcg aggaagcgga atttctcgaa
      721 agccttatac tgtctccgtt cacacatgat cggagggtgt ctctatgtct caattatttc
      781 gtttggcatc gccagaagat tacgaataca tcgaagaatt aaatttatgg gaattgtcat
      841 ttgataagcg accggttcaa ggggttcgtt gtgaagatcc ggtgatcggg gcagaaaaat
      901 ataatcaagg gcgtgaaaaa tttaaggcgt tagcgtcacg gcataaaaaa cactggaaac
      961 cgaacggatt gaccttttcg gagttgatcc gctgggcaat agaatgcgga actccagaac
     1021 aatgtcagct tgttttagcg ttataccatt gcacaaacga tgatgattat caggcgatgg
     1081 gaattcagtt aagccgaagt attgataatg caaatgtcag tccgatcatc tttttcacag
     1141 gtaaaaatca acggttatta ggtgatattt cgatgctaaa acagctcgaa gaaaaggtgc
     1201 gctgacgtta ggtttaccta ttattttatg tattatccta tctattattc tatctcttat
     1261 tttatctatt tcgtctgtaa taggtagaat aatacataga ataagataca gaataataga
     1321 tagacacaag atgacgttgt gttatttctt acccattaat ccacctgtta ttctacctat
     1381 tactttaccc gttattgcac ccaatttagg tataacgggc agaataacgg gtgaaataat
     1441 gggtagaatc atagttttac taacttgcac cccatgatac tttcagtatc aatgccactc
     1501 attttctgga cgaaaatgaa tgacataagg ctccgccctc tggctatttt cttcggctgg
     1561 acgcctgcga aaaaaaccat tcacccaagc ccgtcaaact cactgcgttc gtctgaccac
     1621 cccctttttc gcccctgtat ttggtcgctc aaaaatgtgg tggtcagacg cttcgcttga
     1681 cggggggctt tgcccccaaa acgaaacacg ttcactgggg ttcacttgcc atcgctgggg
     1741 cgtgtcattt cgtttcggct ccccctgttt ttccctttct tcgctggacg ctcatcagga
     1801 taaaaacaaa aagcctaccg ccctcgtttt actcggttgg tcaaatcgct tcttgccaca
     1861 aaacaagttt gtgactttca gcgatttcgc atcgttttac ttgtcagttt gcacgatgtt
     1921 aaaaacgcac tcagaagccc gcaaaaccgt tctaaacttt cagcgtagat ttgggtgttt
     1981 tatagggtga tagtgtctta aaatcgtttc gaggggcttt aatggggatg aacgggaggt
     2041 ttttgctaac taactcgccc gtttaacata aaagggattg tatgaatcaa ttttagctag
     2101 agtttaaggt tgttcaaatt aatgtacaat gattgcactg tataaataac caggtgtagc
     2161 atgtatggaa aagcacttta tcaatgaaaa gttttcacga gatcaattta cggggaatag
     2221 agttaaaaat attgcctttt caaattgtga tttttcaggg gttgatttaa ctgatactga
     2281 atttgttgat tgtagttttt acgacaggaa tagcttggaa gggtgtgatt ttaatagagc
     2341 caaactaaaa aacgctagct ttaaaagctg cgatttatca atgagtaatt ttaaaaacat
     2401 tagcgcctta ggtcttgaaa ttagtgagtg tttagctcaa ggagctgatt ttcgaggggc
     2461 taattttatg aatatgataa ctacaaggtc atggttttgt agtgcttata taaccaagac
     2521 aaatcttagt tacgctaatt tttctagagt catattagaa aagtgcgaac tgtgggaaaa
     2581 tcgctggaat ggcactgtga taactggcgc cgtgtttcgt ggctccgatc tttcttgtgg
     2641 ggagttttca tcgtttgatt ggtctttggc tgattttact gg
//
